Wall clock time and date at job start Tue Mar 31 2020 13:43:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46500 * 109.46817 * 2 1 4 4 C 1.34775 * 120.00133 * 95.70813 * 3 2 1 5 5 O 1.21612 * 119.99987 * 185.40904 * 4 3 2 6 6 C 1.47388 * 120.00075 * 5.40242 * 4 3 2 7 7 C 1.38204 * 126.46368 * 145.62273 * 6 4 3 8 8 N 1.34267 * 108.39718 * 180.02562 * 7 6 4 9 9 H 0.97000 * 125.39216 * 180.02562 * 8 7 6 10 10 C 1.37781 * 109.21524 * 359.97438 * 8 7 6 11 11 C 1.46815 * 125.84766 * 180.02562 * 10 8 7 12 12 N 1.34773 * 119.99900 * 0.02752 * 11 10 8 13 13 O 1.21673 * 120.00022 * 180.02562 * 11 10 8 14 14 C 1.36348 * 108.29907 * 0.26320 * 10 8 7 15 15 C 1.46500 * 120.00202 * 275.69841 * 3 2 1 16 16 H 1.09006 * 110.88605 * 356.12494 * 15 3 2 17 17 C 1.55156 * 111.00671 * 120.00296 * 15 3 2 18 18 C 1.54314 * 102.94606 * 153.57974 * 17 15 3 19 19 N 1.47026 * 107.27153 * 337.80840 * 18 17 15 20 20 C 1.36934 * 125.65081 * 178.98529 * 19 18 17 21 21 H 1.08001 * 120.00320 * 185.02548 * 20 19 18 22 22 C 1.38810 * 119.99921 * 5.02648 * 20 19 18 23 23 N 1.31623 * 120.00154 * 5.08300 * 22 20 19 24 24 Si 1.86801 * 120.00026 * 185.08260 * 22 20 19 25 25 H 1.48501 * 109.47036 * 95.00025 * 24 22 20 26 26 H 1.48503 * 109.47129 * 215.00037 * 24 22 20 27 27 H 1.48502 * 109.47070 * 334.99839 * 24 22 20 28 28 C 1.47426 * 108.70109 * 358.94196 * 19 18 17 29 29 H 1.09006 * 109.47042 * 55.32238 * 1 2 3 30 30 H 1.08997 * 109.47372 * 175.31911 * 1 2 3 31 31 H 1.08998 * 109.47327 * 295.32369 * 1 2 3 32 32 H 1.08993 * 109.47465 * 239.99940 * 2 1 3 33 33 H 1.08996 * 109.47117 * 119.99348 * 2 1 3 34 34 H 1.08001 * 125.80361 * 0.05272 * 7 6 4 35 35 H 0.96998 * 120.00085 * 180.02562 * 12 11 10 36 36 H 0.96996 * 120.00262 * 359.72136 * 12 11 10 37 37 H 1.08003 * 126.49243 * 179.74146 * 14 10 8 38 38 H 1.09001 * 110.71811 * 271.94692 * 17 15 3 39 39 H 1.09004 * 110.71837 * 35.21239 * 17 15 3 40 40 H 1.09003 * 109.88478 * 97.22634 * 18 17 15 41 41 H 1.08997 * 109.88591 * 218.39449 * 18 17 15 42 42 H 0.96998 * 120.00328 * 180.02562 * 23 22 20 43 43 H 1.08996 * 110.36346 * 265.28768 * 28 19 18 44 44 H 1.09000 * 110.36970 * 142.96838 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3523 1.9779 1.1614 5 8 2.6634 3.1535 1.1736 6 6 2.3405 1.2057 2.4167 7 6 3.2012 1.3639 3.4864 8 7 2.8665 0.4743 4.4348 9 1 3.3107 0.3719 5.2909 10 6 1.7913 -0.2694 3.9996 11 6 1.1295 -1.3443 4.7494 12 7 1.5689 -1.6774 5.9792 13 8 0.1843 -1.9343 4.2606 14 6 1.4507 0.1603 2.7513 15 6 2.1437 2.1139 -1.2624 16 1 1.9006 1.4726 -2.1097 17 6 1.2574 3.3874 -1.2568 18 6 1.9871 4.3208 -2.2456 19 7 3.3841 3.8689 -2.3224 20 6 4.3600 4.4226 -3.1074 21 1 5.3382 3.9672 -3.1546 22 6 4.0921 5.5692 -3.8424 23 7 2.9345 6.1811 -3.7088 24 14 5.3745 6.2438 -5.0214 25 1 5.1071 5.7318 -6.3894 26 1 5.3102 7.7274 -5.0267 27 1 6.7256 5.8084 -4.5851 28 6 3.5605 2.7216 -1.4135 29 1 -0.3633 0.5847 -0.8452 30 1 -0.3634 -1.0242 -0.0839 31 1 -0.3634 0.4396 0.9289 32 1 1.8934 -0.5138 -0.8899 33 1 1.8933 -0.5137 0.8900 34 1 4.0060 2.0814 3.5492 35 1 1.1320 -2.3878 6.4744 36 1 2.3250 -1.2098 6.3672 37 1 0.6507 -0.2240 2.1357 38 1 0.2524 3.1594 -1.6118 39 1 1.2246 3.8300 -0.2612 40 1 1.5218 4.2556 -3.2291 41 1 1.9493 5.3479 -1.8826 42 1 2.7471 6.9822 -4.2227 43 1 3.9341 3.0579 -0.4464 44 1 4.2416 1.9919 -1.8513 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034042515.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:43:57 Heat of formation + Delta-G solvation = 20.456035 kcal Electronic energy + Delta-G solvation = -27447.868613 eV Core-core repulsion = 23595.558201 eV Total energy + Delta-G solvation = -3852.310413 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.90318 -39.73764 -39.03630 -36.56973 -35.50322 -34.23800 -32.49212 -31.32915 -30.30513 -29.67351 -28.83446 -26.97630 -24.53315 -23.70388 -23.49232 -22.28691 -20.82908 -20.27260 -19.90435 -19.50076 -18.01173 -17.35811 -16.74758 -16.29576 -16.12191 -15.75338 -15.36996 -14.69747 -14.58901 -14.39162 -14.29842 -13.90423 -13.89312 -13.60406 -13.07338 -12.91571 -12.68489 -12.22030 -12.08071 -11.84669 -11.65859 -11.58992 -11.16293 -10.83441 -10.77156 -10.69822 -10.53740 -10.25481 -10.24196 -9.98222 -9.77092 -9.51979 -9.25752 -9.02113 -8.63691 -8.47398 -8.15616 -6.62362 -5.55823 -2.89579 1.09313 1.86748 2.59165 2.94944 2.98781 3.29731 3.48473 3.52837 3.54364 3.55880 4.45245 4.62388 4.77191 4.79161 4.97152 5.03852 5.27511 5.38528 5.47190 5.58647 5.63933 5.67519 5.77366 5.78942 5.84664 5.96855 6.03198 6.14670 6.25544 6.29868 6.35380 6.45031 6.63853 6.73093 6.76492 6.84830 6.89328 6.95564 7.36543 7.66005 7.74449 7.81256 7.86614 8.00226 8.41978 8.62470 9.36468 9.97556 10.65467 11.54930 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.028979 B = 0.002865 C = 0.002724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 965.989127 B = 9769.646939 C =10276.844359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.094 3.906 3 N -0.596 5.596 4 C 0.582 3.418 5 O -0.519 6.519 6 C -0.222 4.222 7 C 0.098 3.902 8 N -0.532 5.532 9 H 0.418 0.582 10 C -0.075 4.075 11 C 0.596 3.404 12 N -0.857 5.857 13 O -0.529 6.529 14 C -0.077 4.077 15 C 0.133 3.867 16 H 0.090 0.910 17 C -0.153 4.153 18 C 0.182 3.818 19 N -0.601 5.601 20 C -0.221 4.221 21 H 0.076 0.924 22 C -0.011 4.011 23 N -0.921 5.921 24 Si 0.910 3.090 25 H -0.291 1.291 26 H -0.292 1.292 27 H -0.282 1.282 28 C 0.126 3.874 29 H 0.064 0.936 30 H 0.066 0.934 31 H 0.060 0.940 32 H 0.075 0.925 33 H 0.090 0.910 34 H 0.187 0.813 35 H 0.408 0.592 36 H 0.395 0.605 37 H 0.167 0.833 38 H 0.052 0.948 39 H 0.077 0.923 40 H 0.030 0.970 41 H 0.055 0.945 42 H 0.250 0.750 43 H 0.045 0.955 44 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.381 -17.600 20.163 26.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.030 4.030 3 N -0.328 5.328 4 C 0.370 3.630 5 O -0.395 6.395 6 C -0.232 4.232 7 C -0.043 4.043 8 N -0.127 5.127 9 H 0.256 0.744 10 C -0.186 4.186 11 C 0.382 3.618 12 N -0.421 5.421 13 O -0.405 6.405 14 C -0.103 4.103 15 C 0.030 3.970 16 H 0.108 0.892 17 C -0.192 4.192 18 C 0.057 3.943 19 N -0.328 5.328 20 C -0.350 4.350 21 H 0.094 0.906 22 C -0.207 4.207 23 N -0.569 5.569 24 Si 0.741 3.259 25 H -0.218 1.218 26 H -0.218 1.218 27 H -0.207 1.207 28 C -0.001 4.001 29 H 0.083 0.917 30 H 0.085 0.915 31 H 0.079 0.921 32 H 0.093 0.907 33 H 0.108 0.892 34 H 0.204 0.796 35 H 0.239 0.761 36 H 0.223 0.777 37 H 0.184 0.816 38 H 0.071 0.929 39 H 0.096 0.904 40 H 0.048 0.952 41 H 0.073 0.927 42 H 0.061 0.939 43 H 0.062 0.938 44 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -2.769 -17.136 19.690 26.249 hybrid contribution 1.029 0.246 0.183 1.074 sum -1.740 -16.890 19.873 26.138 Atomic orbital electron populations 1.22327 0.96093 1.02250 1.02857 1.21871 0.94389 0.83079 1.03626 1.47757 1.64923 1.13685 1.06476 1.17363 0.77303 0.86161 0.82213 1.90847 1.47476 1.15096 1.86112 1.19798 1.02673 1.03415 0.97296 1.22355 1.00407 0.94022 0.87539 1.41683 1.25932 1.28359 1.16750 0.74419 1.19962 0.97437 1.02771 0.98391 1.17059 0.82550 0.81426 0.80728 1.43711 1.37558 1.41973 1.18854 1.90903 1.27666 1.53183 1.68713 1.21771 0.99831 0.95015 0.93688 1.22365 0.98527 0.92873 0.83280 0.89194 1.23241 0.97406 0.96280 1.02282 1.21073 0.83028 0.95619 0.94559 1.44329 1.07271 1.33491 1.47699 1.19052 0.92172 1.05889 1.17893 0.90612 1.24798 0.97422 0.97560 1.00935 1.69983 1.22293 1.20599 1.44015 0.86112 0.80598 0.78126 0.81023 1.21805 1.21842 1.20733 1.21852 0.92919 0.90172 0.95119 0.91701 0.91515 0.92067 0.90674 0.89222 0.79618 0.76072 0.77734 0.81573 0.92898 0.90410 0.95165 0.92729 0.93929 0.93782 0.95130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.89 9.33 37.16 0.35 -1.54 16 2 C 0.09 1.09 5.61 -4.04 -0.02 1.07 16 3 N -0.60 -9.31 2.56 -164.95 -0.42 -9.73 16 4 C 0.58 9.67 6.86 -12.54 -0.09 9.58 16 5 O -0.52 -10.82 13.11 5.27 0.07 -10.75 16 6 C -0.22 -2.81 5.51 -105.02 -0.58 -3.38 16 7 C 0.10 0.91 11.86 -16.50 -0.20 0.71 16 8 N -0.53 -3.33 5.91 -9.30 -0.05 -3.38 16 9 H 0.42 0.84 8.14 -40.82 -0.33 0.51 16 10 C -0.08 -0.68 6.99 -82.41 -0.58 -1.26 16 11 C 0.60 5.35 8.06 -12.79 -0.10 5.25 16 12 N -0.86 -3.57 8.87 30.29 0.27 -3.30 16 13 O -0.53 -6.90 17.69 5.21 0.09 -6.80 16 14 C -0.08 -0.86 7.96 -39.10 -0.31 -1.18 16 15 C 0.13 2.52 3.55 -65.78 -0.23 2.28 16 16 H 0.09 1.59 7.94 -51.93 -0.41 1.18 16 17 C -0.15 -3.23 6.32 -24.90 -0.16 -3.39 16 18 C 0.18 4.80 5.40 -3.07 -0.02 4.78 16 19 N -0.60 -16.51 3.39 -170.08 -0.58 -17.09 16 20 C -0.22 -6.52 10.27 -15.06 -0.15 -6.67 16 21 H 0.08 2.15 7.83 -52.49 -0.41 1.74 16 22 C -0.01 -0.33 5.47 -17.43 -0.10 -0.43 16 23 N -0.92 -28.41 10.40 55.49 0.58 -27.83 16 24 Si 0.91 22.97 29.56 -169.99 -5.02 17.95 16 25 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 26 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 27 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 28 C 0.13 2.89 6.58 -2.53 -0.02 2.87 16 29 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.06 0.68 6.49 -51.93 -0.34 0.34 16 32 H 0.07 0.80 8.05 -51.93 -0.42 0.39 16 33 H 0.09 0.96 4.69 -51.93 -0.24 0.72 16 34 H 0.19 1.42 8.06 -52.49 -0.42 1.00 16 35 H 0.41 1.26 8.93 -40.82 -0.36 0.90 16 36 H 0.40 0.39 7.91 -40.82 -0.32 0.07 16 37 H 0.17 1.86 4.11 -52.48 -0.22 1.64 16 38 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 39 H 0.08 1.75 6.07 -51.93 -0.32 1.43 16 40 H 0.03 0.85 7.79 -51.93 -0.40 0.44 16 41 H 0.05 1.62 7.11 -51.93 -0.37 1.25 16 42 H 0.25 7.46 8.31 -40.82 -0.34 7.12 16 43 H 0.04 1.08 5.72 -51.93 -0.30 0.79 16 44 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 LS Contribution 352.31 15.07 5.31 5.31 Total: -1.00 -38.83 352.31 -7.66 -46.49 By element: Atomic # 1 Polarization: 6.13 SS G_CDS: -5.69 Total: 0.44 kcal Atomic # 6 Polarization: 10.90 SS G_CDS: -2.20 Total: 8.70 kcal Atomic # 7 Polarization: -61.13 SS G_CDS: -0.21 Total: -61.34 kcal Atomic # 8 Polarization: -17.71 SS G_CDS: 0.16 Total: -17.55 kcal Atomic # 14 Polarization: 22.97 SS G_CDS: -5.02 Total: 17.95 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -38.83 -7.66 -46.49 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034042515.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.946 kcal (2) G-P(sol) polarization free energy of solvation -38.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.490 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds