Wall clock time and date at job start Tue Mar 31 2020 13:51:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.42902 * 109.47009 * 2 1 4 4 C 1.35484 * 117.00072 * 180.02562 * 3 2 1 5 5 C 1.39631 * 119.97597 * 180.02562 * 4 3 2 6 6 N 1.31533 * 120.03611 * 179.74431 * 5 4 3 7 7 C 1.33210 * 119.99089 * 0.50464 * 6 5 4 8 8 C 1.47903 * 120.02551 * 179.74433 * 7 6 5 9 9 O 1.21542 * 119.99977 * 179.73080 * 8 7 6 10 10 N 1.34778 * 119.99957 * 359.72863 * 8 7 6 11 11 C 1.46502 * 119.99873 * 180.02562 * 10 8 7 12 12 C 1.53000 * 110.91392 * 62.45132 * 11 10 8 13 13 C 1.55448 * 111.01096 * 186.50321 * 11 10 8 14 14 C 1.54321 * 102.96961 * 82.52411 * 13 11 10 15 15 N 1.47026 * 107.26791 * 22.19024 * 14 13 11 16 16 C 1.36940 * 125.64258 * 181.03445 * 15 14 13 17 17 H 1.08003 * 119.99660 * 180.02562 * 16 15 14 18 18 C 1.38811 * 120.00559 * 0.02875 * 16 15 14 19 19 N 1.31617 * 119.99776 * 359.97438 * 18 16 15 20 20 Si 1.86801 * 120.00230 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.46764 * 0.02562 * 20 18 16 22 22 H 1.48504 * 109.46723 * 120.00066 * 20 18 16 23 23 H 1.48499 * 109.47140 * 239.99844 * 20 18 16 24 24 C 1.47419 * 108.70576 * 1.06162 * 15 14 13 25 25 C 1.39393 * 119.94944 * 359.47571 * 7 6 5 26 26 N 1.32081 * 119.96093 * 0.26718 * 25 7 6 27 27 H 1.09001 * 109.46854 * 60.00329 * 1 2 3 28 28 H 1.09001 * 109.47176 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47243 * 299.99998 * 1 2 3 30 30 H 1.09001 * 109.47243 * 240.00002 * 2 1 3 31 31 H 1.09001 * 109.46854 * 119.99670 * 2 1 3 32 32 H 1.08001 * 119.98262 * 359.97421 * 5 4 3 33 33 H 0.97001 * 120.00073 * 359.97438 * 10 8 7 34 34 H 1.09000 * 109.47194 * 297.54709 * 12 11 10 35 35 H 1.09001 * 109.47578 * 57.55154 * 12 11 10 36 36 H 1.09003 * 109.46933 * 177.54882 * 12 11 10 37 37 H 1.08998 * 110.70855 * 324.15215 * 13 11 10 38 38 H 1.08998 * 110.85957 * 200.96831 * 13 11 10 39 39 H 1.08998 * 109.88101 * 262.77542 * 14 13 11 40 40 H 1.09000 * 109.88483 * 141.60664 * 14 13 11 41 41 H 0.97004 * 120.00521 * 179.97438 * 19 18 16 42 42 H 1.09002 * 110.36926 * 94.70918 * 24 15 14 43 43 H 1.08995 * 110.36556 * 216.92202 * 24 15 14 44 44 H 1.08003 * 120.01979 * 180.25386 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3495 1.5249 -0.0005 5 6 3.8826 2.8154 0.0000 6 7 5.1864 2.9891 0.0045 7 6 5.9989 1.9335 -0.0015 8 6 7.4651 2.1280 -0.0021 9 8 8.2059 1.1645 -0.0027 10 7 7.9796 3.3737 -0.0021 11 6 9.4319 3.5664 -0.0032 12 6 10.0591 2.9834 -1.2711 13 6 9.7949 5.0689 0.1614 14 6 9.7090 5.2808 1.6876 15 7 9.8688 3.9635 2.3207 16 6 9.8332 3.7156 3.6671 17 1 9.9620 2.7081 4.0342 18 6 9.6314 4.7592 4.5599 19 7 9.4748 5.9870 4.1125 20 14 9.5821 4.4209 6.3964 21 1 9.7834 2.9695 6.6378 22 1 10.6602 5.1885 7.0701 23 1 8.2644 4.8358 6.9410 24 6 10.0742 2.9539 1.2663 25 6 5.4662 0.6454 -0.0016 26 7 4.1567 0.4731 -0.0010 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 3.2241 3.6714 0.0004 33 1 7.3883 4.1427 -0.0020 34 1 9.8848 1.9079 -1.3013 35 1 9.6079 3.4494 -2.1471 36 1 11.1317 3.1777 -1.2682 37 1 9.0721 5.6991 -0.3567 38 1 10.8045 5.2660 -0.1991 39 1 8.7387 5.7026 1.9492 40 1 10.5062 5.9484 2.0146 41 1 9.3334 6.7163 4.7363 42 1 11.1389 2.7823 1.1077 43 1 9.5758 2.0216 1.5316 44 1 6.1239 -0.2113 -0.0023 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001046872271.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:51:09 Heat of formation + Delta-G solvation = 6.396912 kcal Electronic energy + Delta-G solvation = -27149.400443 eV Core-core repulsion = 23296.480381 eV Total energy + Delta-G solvation = -3852.920062 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.57172 -39.79911 -38.71740 -37.15486 -34.55373 -33.83233 -32.56001 -31.84037 -30.64691 -29.74159 -28.62887 -25.68823 -25.53519 -24.88426 -23.57991 -23.03022 -21.38506 -20.18157 -19.15714 -18.84052 -18.19399 -17.68603 -16.80644 -16.64849 -15.53843 -15.19327 -15.18355 -15.04452 -14.58887 -14.28787 -14.27022 -13.68883 -13.56440 -13.21261 -13.00999 -12.92837 -12.75022 -12.19863 -12.04618 -11.89527 -11.78074 -11.70275 -11.63853 -11.47770 -11.10187 -10.88445 -10.85097 -10.48330 -10.33248 -10.04504 -9.98402 -9.79559 -9.62012 -9.24289 -8.97564 -8.61182 -8.49745 -6.75295 -5.66516 -2.98126 0.36046 0.82680 2.48341 2.83645 3.30912 3.42652 3.48581 3.50910 3.74886 3.77283 3.97127 4.25535 4.54475 4.61463 4.63659 4.84487 4.95730 5.01465 5.13948 5.26776 5.34198 5.40591 5.43049 5.51988 5.61946 5.64556 5.76691 5.82289 6.03240 6.16537 6.18144 6.36879 6.43234 6.56230 6.69642 6.70064 6.82801 6.89495 7.13005 7.39292 7.59680 7.62414 7.84886 7.91830 8.30724 8.48830 9.27981 9.88135 10.54153 11.45579 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.012677 B = 0.003524 C = 0.003021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2208.254559 B = 7942.514134 C = 9267.611366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.061 3.939 3 O -0.295 6.295 4 C 0.291 3.709 5 C 0.047 3.953 6 N -0.374 5.374 7 C -0.008 4.008 8 C 0.582 3.418 9 O -0.533 6.533 10 N -0.678 5.678 11 C 0.154 3.846 12 C -0.149 4.149 13 C -0.146 4.146 14 C 0.177 3.823 15 N -0.603 5.603 16 C -0.220 4.220 17 H 0.076 0.924 18 C -0.010 4.010 19 N -0.923 5.923 20 Si 0.909 3.091 21 H -0.280 1.280 22 H -0.291 1.291 23 H -0.292 1.292 24 C 0.131 3.869 25 C 0.155 3.845 26 N -0.503 5.503 27 H 0.066 0.934 28 H 0.080 0.920 29 H 0.067 0.933 30 H 0.069 0.931 31 H 0.070 0.930 32 H 0.183 0.817 33 H 0.408 0.592 34 H 0.071 0.929 35 H 0.050 0.950 36 H 0.064 0.936 37 H 0.065 0.935 38 H 0.074 0.926 39 H 0.046 0.954 40 H 0.044 0.956 41 H 0.250 0.750 42 H 0.027 0.973 43 H 0.056 0.944 44 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.897 -7.877 -13.290 20.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.014 4.014 3 O -0.200 6.200 4 C 0.107 3.893 5 C -0.120 4.120 6 N -0.091 5.091 7 C -0.147 4.147 8 C 0.365 3.635 9 O -0.410 6.410 10 N -0.327 5.327 11 C 0.067 3.933 12 C -0.207 4.207 13 C -0.185 4.185 14 C 0.052 3.948 15 N -0.329 5.329 16 C -0.348 4.348 17 H 0.094 0.906 18 C -0.206 4.206 19 N -0.572 5.572 20 Si 0.740 3.260 21 H -0.206 1.206 22 H -0.218 1.218 23 H -0.219 1.219 24 C 0.004 3.996 25 C -0.004 4.004 26 N -0.232 5.232 27 H 0.085 0.915 28 H 0.099 0.901 29 H 0.086 0.914 30 H 0.088 0.912 31 H 0.088 0.912 32 H 0.200 0.800 33 H 0.244 0.756 34 H 0.090 0.910 35 H 0.069 0.931 36 H 0.083 0.917 37 H 0.083 0.917 38 H 0.092 0.908 39 H 0.064 0.936 40 H 0.062 0.938 41 H 0.060 0.940 42 H 0.044 0.956 43 H 0.074 0.926 44 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges -13.567 -8.267 -13.068 20.572 hybrid contribution -0.423 0.107 1.141 1.222 sum -13.990 -8.160 -11.927 20.114 Atomic orbital electron populations 1.21829 0.92582 1.03122 1.03515 1.22757 0.95129 0.80575 1.02953 1.86235 1.15855 1.31331 1.86601 1.21262 0.85138 0.91790 0.91060 1.22972 0.91629 0.95099 1.02333 1.68402 1.03186 1.32713 1.04799 1.22141 0.95928 0.90951 1.05714 1.17325 0.84946 0.84052 0.77149 1.90751 1.59048 1.40328 1.50918 1.45639 1.07779 1.07430 1.71822 1.21626 0.78804 0.96896 0.95971 1.21987 1.00412 1.02436 0.95889 1.23278 1.01027 0.93076 1.01081 1.21158 1.00975 0.87911 0.84719 1.44446 1.85001 1.02187 1.01277 1.19097 1.41684 0.93754 0.80288 0.90576 1.24761 1.02442 0.95475 0.97927 1.69957 1.56272 0.98558 1.32369 0.86071 0.77167 0.77338 0.85408 1.20568 1.21798 1.21898 1.21891 0.96666 0.93810 0.87242 1.23522 0.89740 0.97894 0.89278 1.68238 1.05349 1.32499 1.17107 0.91513 0.90091 0.91426 0.91245 0.91167 0.80032 0.75643 0.91015 0.93053 0.91672 0.91679 0.90767 0.93576 0.93794 0.93951 0.95558 0.92610 0.79621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.87 10.28 37.16 0.38 -0.49 16 2 C 0.06 0.50 6.04 37.16 0.22 0.72 16 3 O -0.30 -3.08 10.12 -18.14 -0.18 -3.26 16 4 C 0.29 3.48 7.50 -16.71 -0.13 3.36 16 5 C 0.05 0.55 11.18 -17.16 -0.19 0.36 16 6 N -0.37 -5.32 9.70 -9.49 -0.09 -5.41 16 7 C -0.01 -0.12 6.74 -82.88 -0.56 -0.68 16 8 C 0.58 10.09 7.20 -12.30 -0.09 10.00 16 9 O -0.53 -10.10 13.13 5.33 0.07 -10.03 16 10 N -0.68 -11.74 5.17 -46.39 -0.24 -11.98 16 11 C 0.15 2.76 0.83 -129.51 -0.11 2.65 16 12 C -0.15 -2.25 8.60 37.16 0.32 -1.93 16 13 C -0.15 -2.63 6.00 -24.74 -0.15 -2.78 16 14 C 0.18 4.25 5.36 -3.06 -0.02 4.23 16 15 N -0.60 -15.66 3.39 -170.08 -0.58 -16.24 16 16 C -0.22 -6.30 10.28 -15.06 -0.15 -6.46 16 17 H 0.08 2.16 7.83 -52.48 -0.41 1.75 16 18 C -0.01 -0.30 5.49 -17.43 -0.10 -0.39 16 19 N -0.92 -27.30 10.31 55.49 0.57 -26.72 16 20 Si 0.91 22.70 29.55 -169.99 -5.02 17.68 16 21 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 22 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 23 H -0.29 -7.33 7.11 56.52 0.40 -6.92 16 24 C 0.13 2.89 6.10 -2.53 -0.02 2.87 16 25 C 0.15 2.08 10.76 -17.01 -0.18 1.90 16 26 N -0.50 -6.40 9.37 -12.76 -0.12 -6.52 16 27 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.08 0.33 8.14 -51.93 -0.42 -0.10 16 29 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.07 0.55 8.11 -51.93 -0.42 0.13 16 31 H 0.07 0.60 8.11 -51.93 -0.42 0.17 16 32 H 0.18 1.59 8.06 -52.49 -0.42 1.17 16 33 H 0.41 6.75 7.84 -40.82 -0.32 6.43 16 34 H 0.07 1.16 6.53 -51.93 -0.34 0.82 16 35 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 36 H 0.06 0.91 8.12 -51.93 -0.42 0.49 16 37 H 0.06 1.03 8.05 -51.93 -0.42 0.61 16 38 H 0.07 1.23 8.03 -51.93 -0.42 0.81 16 39 H 0.05 1.22 7.38 -51.93 -0.38 0.84 16 40 H 0.04 1.17 7.51 -51.93 -0.39 0.78 16 41 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 42 H 0.03 0.58 8.04 -51.93 -0.42 0.16 16 43 H 0.06 1.32 6.31 -51.93 -0.33 0.99 16 44 H 0.19 2.24 7.64 -52.48 -0.40 1.84 16 LS Contribution 362.86 15.07 5.47 5.47 Total: -1.00 -32.75 362.86 -7.22 -39.98 By element: Atomic # 1 Polarization: 10.01 SS G_CDS: -6.34 Total: 3.68 kcal Atomic # 6 Polarization: 14.12 SS G_CDS: -0.76 Total: 13.36 kcal Atomic # 7 Polarization: -66.41 SS G_CDS: -0.46 Total: -66.86 kcal Atomic # 8 Polarization: -13.18 SS G_CDS: -0.11 Total: -13.30 kcal Atomic # 14 Polarization: 22.70 SS G_CDS: -5.02 Total: 17.68 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -32.75 -7.22 -39.98 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046872271.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.373 kcal (2) G-P(sol) polarization free energy of solvation -32.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.976 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds