Wall clock time and date at job start Tue Mar 31 2020 13:51:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42901 * 109.47434 * 2 1 4 4 C 1.35482 * 117.00465 * 179.97438 * 3 2 1 5 5 C 1.39633 * 119.97802 * 179.97438 * 4 3 2 6 6 N 1.31527 * 120.04124 * 180.02562 * 5 4 3 7 7 C 1.33221 * 119.98693 * 0.02562 * 6 5 4 8 8 C 1.47899 * 120.02159 * 179.97438 * 7 6 5 9 9 O 1.21552 * 120.00047 * 179.97438 * 8 7 6 10 10 N 1.34779 * 120.00423 * 0.02562 * 8 7 6 11 11 C 1.46498 * 120.00306 * 179.97438 * 10 8 7 12 12 C 1.53001 * 110.88391 * 297.57406 * 11 10 8 13 13 C 1.55159 * 111.03909 * 173.66568 * 11 10 8 14 14 C 1.54320 * 102.94130 * 277.41533 * 13 11 10 15 15 N 1.47294 * 107.30900 * 337.81372 * 14 13 11 16 16 C 1.36935 * 125.79375 * 178.92674 * 15 14 13 17 17 H 1.08000 * 119.99782 * 174.83252 * 16 15 14 18 18 C 1.38813 * 119.99748 * 354.82946 * 16 15 14 19 19 N 1.31620 * 120.00341 * 7.02995 * 18 16 15 20 20 Si 1.86808 * 119.99539 * 187.02565 * 18 16 15 21 21 H 1.48502 * 109.46896 * 94.99260 * 20 18 16 22 22 H 1.48501 * 109.46951 * 214.98619 * 20 18 16 23 23 H 1.48492 * 109.47136 * 334.98799 * 20 18 16 24 24 C 1.47424 * 108.55492 * 358.92849 * 15 14 13 25 25 C 1.39385 * 119.94932 * 0.25497 * 7 6 5 26 26 N 1.32079 * 119.96363 * 359.49633 * 25 7 6 27 27 H 1.09001 * 109.46896 * 60.00223 * 1 2 3 28 28 H 1.09001 * 109.46846 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47002 * 300.00181 * 1 2 3 30 30 H 1.09000 * 109.47492 * 239.99708 * 2 1 3 31 31 H 1.09006 * 109.47349 * 119.99823 * 2 1 3 32 32 H 1.08002 * 119.97874 * 359.97438 * 5 4 3 33 33 H 0.96996 * 119.99670 * 359.97438 * 10 8 7 34 34 H 1.08997 * 109.46891 * 182.42544 * 12 11 10 35 35 H 1.09003 * 109.47229 * 302.42038 * 12 11 10 36 36 H 1.08994 * 109.47296 * 62.42911 * 12 11 10 37 37 H 1.08999 * 110.71715 * 35.77732 * 13 11 10 38 38 H 1.08997 * 110.71630 * 158.87093 * 13 11 10 39 39 H 1.09004 * 109.88495 * 97.22540 * 14 13 11 40 40 H 1.09000 * 109.88099 * 218.38976 * 14 13 11 41 41 H 0.96997 * 119.99818 * 179.97438 * 19 18 16 42 42 H 1.09002 * 110.36530 * 265.25725 * 24 15 14 43 43 H 1.09001 * 110.36388 * 143.04481 * 24 15 14 44 44 H 1.08007 * 120.01628 * 179.72486 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3495 1.5248 0.0005 5 6 3.8827 2.8153 0.0000 6 7 5.1864 2.9891 0.0000 7 6 5.9989 1.9334 0.0000 8 6 7.4651 2.1279 -0.0005 9 8 8.2060 1.1643 -0.0001 10 7 7.9797 3.3736 -0.0005 11 6 9.4319 3.5663 -0.0005 12 6 10.0596 2.9820 1.2666 13 6 9.7948 5.0664 -0.1602 14 6 9.7086 5.2822 -1.6858 15 7 9.8678 3.9646 -2.3246 16 6 9.8314 3.7176 -3.6709 17 1 10.0423 2.7262 -4.0439 18 6 9.5234 4.7414 -4.5563 19 7 9.4025 5.9765 -4.1178 20 14 9.2805 4.3661 -6.3701 21 1 7.8344 4.1711 -6.6459 22 1 9.7909 5.4994 -7.1827 23 1 10.0231 3.1297 -6.7235 24 6 10.0732 2.9542 -1.2708 25 6 5.4662 0.6453 -0.0054 26 7 4.1567 0.4731 -0.0004 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 1.8934 -0.5139 -0.8899 31 1 1.8934 -0.5138 0.8900 32 1 3.2241 3.6713 -0.0012 33 1 7.3884 4.1425 -0.0005 34 1 11.1322 3.1757 1.2632 35 1 9.6092 3.4477 2.1432 36 1 9.8847 1.9066 1.2962 37 1 9.0722 5.6954 0.3597 38 1 10.8041 5.2597 0.2030 39 1 8.7382 5.7051 -1.9462 40 1 10.5058 5.9505 -2.0113 41 1 9.1876 6.6919 -4.7366 42 1 11.1379 2.7819 -1.1130 43 1 9.5741 2.0223 -1.5364 44 1 6.1239 -0.2114 -0.0099 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001046872275.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:51:13 Heat of formation + Delta-G solvation = 6.363099 kcal Electronic energy + Delta-G solvation = -27172.338501 eV Core-core repulsion = 23319.416973 eV Total energy + Delta-G solvation = -3852.921528 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.56895 -39.79938 -38.71694 -37.15190 -34.54961 -33.82156 -32.55868 -31.84470 -30.64707 -29.74680 -28.62986 -25.68759 -25.53374 -24.88197 -23.57545 -23.02804 -21.38133 -20.19295 -19.15509 -18.83866 -18.19160 -17.68329 -16.80430 -16.64060 -15.53703 -15.19196 -15.18117 -15.04158 -14.58592 -14.28777 -14.26789 -13.68959 -13.56630 -13.21370 -13.00796 -12.92766 -12.74986 -12.19658 -12.03877 -11.89176 -11.79186 -11.70156 -11.64878 -11.47552 -11.09953 -10.86952 -10.86029 -10.48357 -10.32821 -10.05931 -9.99700 -9.79679 -9.62958 -9.24149 -8.97277 -8.60686 -8.47708 -6.75278 -5.68002 -2.98187 0.36335 0.82956 2.48543 2.83929 3.31174 3.43058 3.48680 3.50284 3.75195 3.77574 3.97423 4.25806 4.54502 4.61599 4.63863 4.84760 4.95933 5.01736 5.14359 5.26996 5.34438 5.39042 5.43202 5.52508 5.62119 5.64799 5.75687 5.82526 6.03015 6.16351 6.18051 6.36689 6.43032 6.55812 6.69839 6.70300 6.82973 6.89752 7.13113 7.39505 7.57070 7.63309 7.84308 7.91942 8.30063 8.49114 9.27016 9.87635 10.54523 11.44662 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.012431 B = 0.003601 C = 0.003060 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2251.959397 B = 7774.174564 C = 9148.072922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.061 3.939 3 O -0.295 6.295 4 C 0.291 3.709 5 C 0.047 3.953 6 N -0.374 5.374 7 C -0.008 4.008 8 C 0.582 3.418 9 O -0.533 6.533 10 N -0.678 5.678 11 C 0.154 3.846 12 C -0.149 4.149 13 C -0.146 4.146 14 C 0.176 3.824 15 N -0.603 5.603 16 C -0.221 4.221 17 H 0.076 0.924 18 C -0.008 4.008 19 N -0.921 5.921 20 Si 0.907 3.093 21 H -0.291 1.291 22 H -0.291 1.291 23 H -0.281 1.281 24 C 0.131 3.869 25 C 0.155 3.845 26 N -0.503 5.503 27 H 0.067 0.933 28 H 0.080 0.920 29 H 0.066 0.934 30 H 0.070 0.930 31 H 0.069 0.931 32 H 0.183 0.817 33 H 0.408 0.592 34 H 0.064 0.936 35 H 0.050 0.950 36 H 0.071 0.929 37 H 0.065 0.935 38 H 0.074 0.926 39 H 0.048 0.952 40 H 0.042 0.958 41 H 0.251 0.749 42 H 0.026 0.974 43 H 0.056 0.944 44 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.750 -7.818 13.286 20.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.014 4.014 3 O -0.200 6.200 4 C 0.107 3.893 5 C -0.120 4.120 6 N -0.091 5.091 7 C -0.147 4.147 8 C 0.365 3.635 9 O -0.411 6.411 10 N -0.327 5.327 11 C 0.067 3.933 12 C -0.208 4.208 13 C -0.184 4.184 14 C 0.051 3.949 15 N -0.329 5.329 16 C -0.350 4.350 17 H 0.094 0.906 18 C -0.204 4.204 19 N -0.569 5.569 20 Si 0.738 3.262 21 H -0.218 1.218 22 H -0.218 1.218 23 H -0.207 1.207 24 C 0.004 3.996 25 C -0.004 4.004 26 N -0.232 5.232 27 H 0.086 0.914 28 H 0.099 0.901 29 H 0.085 0.915 30 H 0.088 0.912 31 H 0.088 0.912 32 H 0.200 0.800 33 H 0.244 0.756 34 H 0.083 0.917 35 H 0.069 0.931 36 H 0.090 0.910 37 H 0.083 0.917 38 H 0.092 0.908 39 H 0.066 0.934 40 H 0.060 0.940 41 H 0.061 0.939 42 H 0.044 0.956 43 H 0.074 0.926 44 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges -13.422 -8.201 13.073 20.453 hybrid contribution -0.532 0.076 -1.135 1.255 sum -13.954 -8.126 11.938 20.081 Atomic orbital electron populations 1.21827 0.92584 1.03121 1.03515 1.22756 0.95127 0.80577 1.02954 1.86234 1.15856 1.31332 1.86601 1.21262 0.85137 0.91790 0.91062 1.22971 0.91632 0.95100 1.02331 1.68405 1.03186 1.32703 1.04809 1.22140 0.95928 0.90949 1.05713 1.17325 0.84944 0.84053 0.77142 1.90754 1.59044 1.40328 1.50924 1.45639 1.07773 1.07432 1.71821 1.21572 0.78822 0.96887 0.95978 1.21994 1.00401 1.02453 0.95907 1.23220 1.01047 0.93155 1.01017 1.21208 1.00990 0.87925 0.84759 1.44496 1.85179 1.02017 1.01225 1.19048 1.39900 0.95575 0.80449 0.90586 1.24775 1.02172 0.95495 0.97987 1.69957 1.55033 0.98700 1.33227 0.86157 0.77824 0.77112 0.85102 1.21813 1.21798 1.20660 1.21900 0.96643 0.93844 0.87246 1.23519 0.89739 0.97897 0.89275 1.68238 1.05350 1.32499 1.17110 0.91433 0.90091 0.91507 0.91165 0.91248 0.80035 0.75648 0.91683 0.93056 0.91010 0.91654 0.90757 0.93403 0.93969 0.93890 0.95606 0.92568 0.79618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.87 10.28 37.16 0.38 -0.49 16 2 C 0.06 0.50 6.04 37.16 0.22 0.73 16 3 O -0.30 -3.09 10.12 -18.14 -0.18 -3.28 16 4 C 0.29 3.50 7.50 -16.71 -0.13 3.38 16 5 C 0.05 0.55 11.18 -17.16 -0.19 0.36 16 6 N -0.37 -5.34 9.70 -9.49 -0.09 -5.43 16 7 C -0.01 -0.12 6.74 -82.88 -0.56 -0.68 16 8 C 0.58 10.12 7.20 -12.30 -0.09 10.03 16 9 O -0.53 -10.12 13.13 5.32 0.07 -10.05 16 10 N -0.68 -11.76 5.16 -46.53 -0.24 -12.00 16 11 C 0.15 2.76 0.82 -129.67 -0.11 2.66 16 12 C -0.15 -2.25 8.58 37.16 0.32 -1.93 16 13 C -0.15 -2.62 6.00 -24.90 -0.15 -2.77 16 14 C 0.18 4.21 5.39 -2.92 -0.02 4.19 16 15 N -0.60 -15.65 3.40 -169.85 -0.58 -16.23 16 16 C -0.22 -6.35 10.27 -15.06 -0.15 -6.50 16 17 H 0.08 2.15 7.84 -52.49 -0.41 1.74 16 18 C -0.01 -0.24 5.48 -17.43 -0.10 -0.34 16 19 N -0.92 -27.22 10.38 55.49 0.58 -26.64 16 20 Si 0.91 22.69 29.56 -169.99 -5.02 17.66 16 21 H -0.29 -7.31 7.11 56.52 0.40 -6.90 16 22 H -0.29 -7.30 7.11 56.52 0.40 -6.89 16 23 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 24 C 0.13 2.88 6.10 -2.53 -0.02 2.87 16 25 C 0.15 2.09 10.76 -17.02 -0.18 1.90 16 26 N -0.50 -6.43 9.37 -12.76 -0.12 -6.55 16 27 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.07 0.60 8.11 -51.93 -0.42 0.18 16 31 H 0.07 0.55 8.11 -51.93 -0.42 0.13 16 32 H 0.18 1.60 8.06 -52.49 -0.42 1.18 16 33 H 0.41 6.76 7.83 -40.82 -0.32 6.44 16 34 H 0.06 0.91 8.11 -51.93 -0.42 0.48 16 35 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 36 H 0.07 1.16 6.53 -51.93 -0.34 0.82 16 37 H 0.06 1.03 8.05 -51.93 -0.42 0.61 16 38 H 0.07 1.23 8.01 -51.93 -0.42 0.81 16 39 H 0.05 1.26 7.31 -51.93 -0.38 0.88 16 40 H 0.04 1.12 7.62 -51.93 -0.40 0.72 16 41 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 42 H 0.03 0.57 8.04 -51.93 -0.42 0.15 16 43 H 0.06 1.33 6.31 -51.93 -0.33 1.00 16 44 H 0.19 2.25 7.64 -52.48 -0.40 1.85 16 LS Contribution 362.92 15.07 5.47 5.47 Total: -1.00 -32.73 362.92 -7.22 -39.95 By element: Atomic # 1 Polarization: 10.04 SS G_CDS: -6.34 Total: 3.70 kcal Atomic # 6 Polarization: 14.15 SS G_CDS: -0.76 Total: 13.39 kcal Atomic # 7 Polarization: -66.40 SS G_CDS: -0.45 Total: -66.85 kcal Atomic # 8 Polarization: -13.21 SS G_CDS: -0.11 Total: -13.33 kcal Atomic # 14 Polarization: 22.69 SS G_CDS: -5.02 Total: 17.66 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -32.73 -7.22 -39.95 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046872275.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.312 kcal (2) G-P(sol) polarization free energy of solvation -32.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.949 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds