Wall clock time and date at job start Tue Mar 31 2020 13:50:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.42901 * 109.47033 * 2 1 4 4 C 1.35996 * 117.00123 * 180.02562 * 3 2 1 5 5 C 1.39697 * 125.67443 * 180.31844 * 4 3 2 6 6 C 1.37984 * 107.63869 * 180.12858 * 5 4 3 7 7 C 1.47167 * 126.43304 * 179.84956 * 6 5 4 8 8 O 1.21632 * 120.00106 * 353.36783 * 7 6 5 9 9 N 1.34775 * 120.00161 * 173.37968 * 7 6 5 10 10 C 1.46763 * 125.33179 * 354.64633 * 9 7 6 11 11 C 1.53981 * 106.67509 * 198.41737 * 10 9 7 12 12 H 1.08997 * 113.34670 * 94.44917 * 11 10 9 13 13 C 1.53680 * 109.29345 * 221.16613 * 11 10 9 14 14 N 1.46655 * 107.96950 * 93.07199 * 13 11 10 15 15 C 1.36942 * 125.32933 * 179.31374 * 14 13 11 16 16 H 1.07994 * 120.00206 * 359.97438 * 15 14 13 17 17 C 1.38812 * 119.99341 * 179.97438 * 15 14 13 18 18 N 1.31624 * 120.00425 * 359.97438 * 17 15 14 19 19 Si 1.86805 * 119.99624 * 180.02562 * 17 15 14 20 20 H 1.48496 * 109.47262 * 89.99911 * 19 17 15 21 21 H 1.48507 * 109.46920 * 210.00277 * 19 17 15 22 22 H 1.48501 * 109.47102 * 329.99319 * 19 17 15 23 23 C 1.46754 * 109.33139 * 359.28388 * 14 13 11 24 24 C 1.53976 * 106.67858 * 18.45601 * 23 14 13 25 25 H 1.09001 * 112.80465 * 94.13764 * 24 23 14 26 26 C 1.46656 * 125.33722 * 174.60938 * 9 7 6 27 27 N 1.36666 * 107.12921 * 359.58208 * 6 5 4 28 28 H 0.96998 * 126.09945 * 180.25451 * 27 6 5 29 29 N 1.31224 * 125.67152 * 359.97052 * 4 3 2 30 30 H 1.08998 * 109.47012 * 60.00549 * 1 2 3 31 31 H 1.09005 * 109.46683 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47271 * 299.99811 * 1 2 3 33 33 H 1.09000 * 109.47271 * 240.00189 * 2 1 3 34 34 H 1.08998 * 109.47281 * 119.99930 * 2 1 3 35 35 H 1.08001 * 126.17673 * 359.97062 * 5 4 3 36 36 H 1.08999 * 110.01669 * 79.11151 * 10 9 7 37 37 H 1.09001 * 110.01951 * 317.72641 * 10 9 7 38 38 H 1.09000 * 109.76416 * 212.69859 * 13 11 10 39 39 H 1.09000 * 109.76818 * 333.43558 * 13 11 10 40 40 H 0.96996 * 119.99555 * 180.02562 * 18 17 15 41 41 H 1.09006 * 110.01446 * 137.75886 * 23 14 13 42 42 H 1.08996 * 110.01982 * 259.14462 * 23 14 13 43 43 H 1.09005 * 109.76580 * 59.69665 * 26 9 7 44 44 H 1.08991 * 109.76690 * 298.95457 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3546 1.5255 -0.0005 5 6 4.0135 2.7573 0.0057 6 6 5.3702 2.5058 -0.0003 7 6 6.4454 3.5106 0.0000 8 8 6.1749 4.6908 -0.1158 9 7 7.7299 3.1232 0.1283 10 6 8.1807 1.7503 0.3855 11 6 9.6245 1.8505 0.9112 12 1 9.6881 1.8632 1.9993 13 6 10.4737 0.7368 0.2785 14 7 11.1091 1.2813 -0.9259 15 6 11.9548 0.5935 -1.7549 16 1 12.2012 -0.4360 -1.5414 17 6 12.4952 1.2199 -2.8695 18 7 12.1944 2.4746 -3.1300 19 14 13.6481 0.2816 -4.0008 20 1 12.8599 -0.3872 -5.0669 21 1 14.6137 1.2264 -4.6178 22 1 14.3877 -0.7402 -3.2170 23 6 10.6962 2.6783 -1.1038 24 6 10.1559 3.1560 0.2566 25 1 10.9132 3.6570 0.8596 26 6 8.8962 4.0071 0.0322 27 7 5.5279 1.1482 -0.0004 28 1 6.3723 0.6710 -0.0004 29 7 4.2529 0.5690 -0.0005 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8900 33 1 1.8934 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 3.5455 3.7306 0.0113 36 1 8.1591 1.1715 -0.5378 37 1 7.5423 1.2822 1.1348 38 1 11.2384 0.4108 0.9835 39 1 9.8362 -0.1056 0.0103 40 1 12.5718 2.9120 -3.9091 41 1 11.5519 3.2854 -1.3995 42 1 9.9136 2.7427 -1.8596 43 1 8.8346 4.7829 0.7954 44 1 8.9316 4.4644 -0.9565 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001048884997.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:50:28 Heat of formation + Delta-G solvation = 47.879118 kcal Electronic energy + Delta-G solvation = -27097.783512 eV Core-core repulsion = 23246.662253 eV Total energy + Delta-G solvation = -3851.121259 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.64696 -40.16773 -38.61707 -38.08271 -35.24523 -32.65375 -32.22745 -31.20516 -30.31728 -29.87814 -29.65705 -25.98944 -25.78070 -24.40573 -23.47171 -21.83651 -21.47687 -20.37695 -20.12627 -19.48984 -18.10276 -17.17350 -16.94575 -16.61753 -16.36864 -15.73997 -15.43257 -15.02103 -14.57148 -14.37368 -14.28302 -13.82914 -13.63299 -13.46790 -13.18721 -13.03652 -12.82841 -12.74803 -12.22455 -12.05717 -11.93655 -11.90221 -11.55840 -11.13236 -11.07796 -10.99298 -10.89731 -10.65491 -10.25461 -10.20225 -10.09312 -9.96434 -9.70211 -9.30752 -8.87544 -8.73728 -8.61462 -6.97012 -5.79009 -3.19095 0.95451 2.25383 2.39910 2.63569 3.11031 3.20225 3.33497 3.38806 3.40789 4.23551 4.38564 4.49447 4.52914 4.69313 4.75335 4.80154 4.94852 5.03755 5.19075 5.24872 5.30570 5.37658 5.39397 5.48037 5.51323 5.56549 5.60588 5.70655 5.78737 5.93783 5.98912 6.04491 6.15051 6.28315 6.37734 6.46874 6.66341 6.75973 7.09015 7.29285 7.36329 7.40753 7.51700 7.71509 7.94364 8.20833 9.10728 9.71145 10.32702 11.27208 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.017555 B = 0.002925 C = 0.002709 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1594.639180 B = 9570.381021 C =10333.158739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.058 3.942 3 O -0.289 6.289 4 C 0.260 3.740 5 C -0.196 4.196 6 C 0.069 3.931 7 C 0.596 3.404 8 O -0.517 6.517 9 N -0.602 5.602 10 C 0.092 3.908 11 C -0.105 4.105 12 H 0.094 0.906 13 C 0.144 3.856 14 N -0.602 5.602 15 C -0.230 4.230 16 H 0.079 0.921 17 C -0.007 4.007 18 N -0.921 5.921 19 Si 0.915 3.085 20 H -0.289 1.289 21 H -0.290 1.290 22 H -0.281 1.281 23 C 0.167 3.833 24 C -0.121 4.121 25 H 0.098 0.902 26 C 0.121 3.879 27 N -0.447 5.447 28 H 0.447 0.553 29 N -0.320 5.320 30 H 0.066 0.934 31 H 0.079 0.921 32 H 0.066 0.934 33 H 0.065 0.935 34 H 0.064 0.936 35 H 0.167 0.833 36 H 0.080 0.920 37 H 0.069 0.931 38 H 0.029 0.971 39 H 0.025 0.975 40 H 0.254 0.746 41 H 0.096 0.904 42 H 0.020 0.980 43 H 0.067 0.933 44 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.949 -2.477 9.413 18.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.017 4.017 3 O -0.193 6.193 4 C 0.057 3.943 5 C -0.228 4.228 6 C -0.062 4.062 7 C 0.382 3.618 8 O -0.391 6.391 9 N -0.335 5.335 10 C -0.031 4.031 11 C -0.124 4.124 12 H 0.113 0.887 13 C 0.018 3.982 14 N -0.328 5.328 15 C -0.358 4.358 16 H 0.097 0.903 17 C -0.203 4.203 18 N -0.568 5.568 19 Si 0.745 3.255 20 H -0.216 1.216 21 H -0.216 1.216 22 H -0.206 1.206 23 C 0.042 3.958 24 C -0.141 4.141 25 H 0.116 0.884 26 C -0.001 4.001 27 N -0.170 5.170 28 H 0.299 0.701 29 N -0.163 5.163 30 H 0.085 0.915 31 H 0.098 0.902 32 H 0.085 0.915 33 H 0.083 0.917 34 H 0.083 0.917 35 H 0.184 0.816 36 H 0.098 0.902 37 H 0.087 0.913 38 H 0.047 0.953 39 H 0.043 0.957 40 H 0.064 0.936 41 H 0.114 0.886 42 H 0.038 0.962 43 H 0.086 0.914 44 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -16.160 -2.789 9.130 18.769 hybrid contribution 0.899 -0.291 -0.681 1.165 sum -15.262 -3.081 8.449 17.714 Atomic orbital electron populations 1.21795 0.92656 1.02940 1.03511 1.22735 0.95441 0.81196 1.02349 1.86305 1.13782 1.29711 1.89538 1.20205 0.84388 0.91917 0.97811 1.21017 0.89514 0.98242 1.13983 1.21218 0.95173 0.84485 1.05304 1.16610 0.80236 0.86941 0.78008 1.90854 1.82116 1.16270 1.49885 1.48182 1.05195 1.10467 1.69660 1.22429 0.96733 0.83540 1.00379 1.22781 0.92237 0.97715 0.99714 0.88732 1.21092 0.93956 0.93374 0.89803 1.44244 1.53387 1.09297 1.25872 1.19041 1.18975 0.95046 1.02764 0.90323 1.24811 1.00558 0.96448 0.98511 1.69853 1.47644 1.10494 1.28829 0.86079 0.80230 0.78541 0.80654 1.21573 1.21571 1.20626 1.21582 0.99331 0.86279 0.88589 1.23268 0.95450 0.94207 1.01193 0.88364 1.21855 0.83111 0.92533 1.02570 1.46839 1.07138 1.03695 1.59301 0.70124 1.77309 0.88355 1.20430 1.30165 0.91465 0.90242 0.91501 0.91668 0.91726 0.81572 0.90215 0.91312 0.95309 0.95745 0.93557 0.88623 0.96196 0.91424 0.90257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.99 10.28 37.16 0.38 -0.60 16 2 C 0.06 0.53 6.33 37.16 0.24 0.77 16 3 O -0.29 -3.51 10.22 -19.73 -0.20 -3.71 16 4 C 0.26 3.53 7.85 -17.27 -0.14 3.40 16 5 C -0.20 -2.71 10.64 -39.13 -0.42 -3.13 16 6 C 0.07 0.99 6.88 -82.18 -0.57 0.42 16 7 C 0.60 9.42 7.81 -12.64 -0.10 9.32 16 8 O -0.52 -9.47 17.22 5.25 0.09 -9.38 16 9 N -0.60 -8.99 3.31 -173.70 -0.58 -9.57 16 10 C 0.09 1.23 4.40 -3.39 -0.01 1.22 16 11 C -0.10 -1.51 4.10 -88.47 -0.36 -1.88 16 12 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 13 C 0.14 2.59 6.58 -3.60 -0.02 2.57 16 14 N -0.60 -14.04 3.38 -171.89 -0.58 -14.62 16 15 C -0.23 -6.03 10.25 -15.06 -0.15 -6.19 16 16 H 0.08 1.99 7.83 -52.49 -0.41 1.58 16 17 C -0.01 -0.19 5.48 -17.43 -0.10 -0.29 16 18 N -0.92 -25.75 10.16 55.49 0.56 -25.19 16 19 Si 0.91 21.32 29.55 -169.99 -5.02 16.29 16 20 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 21 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 22 H -0.28 -6.37 7.11 56.52 0.40 -5.96 16 23 C 0.17 3.68 4.87 -3.39 -0.02 3.66 16 24 C -0.12 -1.98 4.10 -88.48 -0.36 -2.34 16 25 H 0.10 1.50 8.14 -51.93 -0.42 1.08 16 26 C 0.12 1.87 6.19 -3.61 -0.02 1.85 16 27 N -0.45 -5.85 6.74 33.41 0.23 -5.62 16 28 H 0.45 5.12 5.31 -182.64 -0.97 4.15 16 29 N -0.32 -4.39 12.05 30.46 0.37 -4.02 16 30 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 31 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.17 2.10 8.06 -52.49 -0.42 1.68 16 36 H 0.08 1.16 7.00 -51.93 -0.36 0.79 16 37 H 0.07 0.74 6.58 -51.93 -0.34 0.40 16 38 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 39 H 0.02 0.43 7.63 -51.93 -0.40 0.03 16 40 H 0.25 6.95 8.31 -40.82 -0.34 6.62 16 41 H 0.10 2.42 6.19 -51.93 -0.32 2.10 16 42 H 0.02 0.49 7.56 -51.93 -0.39 0.10 16 43 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 44 H 0.08 1.34 7.63 -51.93 -0.40 0.94 16 LS Contribution 355.10 15.07 5.35 5.35 Total: -1.00 -30.99 355.10 -8.39 -39.38 By element: Atomic # 1 Polarization: 9.28 SS G_CDS: -6.96 Total: 2.32 kcal Atomic # 6 Polarization: 10.42 SS G_CDS: -1.65 Total: 8.77 kcal Atomic # 7 Polarization: -59.02 SS G_CDS: 0.00 Total: -59.02 kcal Atomic # 8 Polarization: -12.99 SS G_CDS: -0.11 Total: -13.10 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.29 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -30.99 -8.39 -39.38 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001048884997.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.262 kcal (2) G-P(sol) polarization free energy of solvation -30.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.383 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds