Wall clock time and date at job start Tue Mar 31 2020 13:50:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.42898 * 109.46787 * 2 1 4 4 C 1.35999 * 117.00162 * 180.02562 * 3 2 1 5 5 C 1.39695 * 125.67673 * 179.97438 * 4 3 2 6 6 C 1.37982 * 107.63938 * 179.97438 * 5 4 3 7 7 C 1.47169 * 126.43394 * 179.97438 * 6 5 4 8 8 O 1.21623 * 120.00047 * 0.02562 * 7 6 5 9 9 N 1.34777 * 119.99709 * 179.97438 * 7 6 5 10 10 C 1.46499 * 119.99665 * 179.72413 * 9 7 6 11 11 H 1.09004 * 110.56245 * 32.37602 * 10 9 7 12 12 C 1.54858 * 110.62912 * 269.30352 * 10 9 7 13 13 C 1.55847 * 103.44515 * 241.51256 * 12 10 9 14 14 H 1.09003 * 116.12355 * 159.14799 * 13 12 10 15 15 C 1.55845 * 105.06280 * 288.16832 * 13 12 10 16 16 C 1.54858 * 103.43952 * 71.82758 * 15 13 12 17 17 C 1.55840 * 103.44892 * 359.97438 * 16 15 13 18 18 H 1.09005 * 116.13095 * 159.15125 * 17 16 15 19 19 N 1.50234 * 101.05269 * 32.93567 * 13 12 10 20 20 C 1.36937 * 130.83985 * 126.00707 * 19 13 12 21 21 H 1.07992 * 120.00099 * 180.02562 * 20 19 13 22 22 C 1.38809 * 119.99783 * 0.03425 * 20 19 13 23 23 N 1.31620 * 120.00310 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 120.00118 * 179.97438 * 22 20 19 25 25 H 1.48503 * 109.47197 * 59.99312 * 24 22 20 26 26 H 1.48498 * 109.47586 * 179.97438 * 24 22 20 27 27 H 1.48507 * 109.47015 * 299.99844 * 24 22 20 28 28 N 1.36672 * 107.12885 * 0.22673 * 6 5 4 29 29 H 0.97001 * 126.09528 * 179.77015 * 28 6 5 30 30 N 1.31233 * 125.67001 * 359.95436 * 4 3 2 31 31 H 1.09003 * 109.46614 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47249 * 299.99866 * 1 2 3 33 33 H 1.08995 * 109.47170 * 60.00391 * 1 2 3 34 34 H 1.09000 * 109.47249 * 240.00134 * 2 1 3 35 35 H 1.08995 * 109.47170 * 119.99609 * 2 1 3 36 36 H 1.08001 * 126.17699 * 359.94752 * 5 4 3 37 37 H 0.97001 * 120.00485 * 0.02562 * 9 7 6 38 38 H 1.09003 * 110.62094 * 0.02562 * 12 10 9 39 39 H 1.09002 * 110.62618 * 123.02006 * 12 10 9 40 40 H 1.08997 * 110.62480 * 190.30915 * 15 13 12 41 41 H 1.08991 * 110.62797 * 313.18464 * 15 13 12 42 42 H 1.09001 * 110.62430 * 241.50572 * 16 15 13 43 43 H 1.09004 * 110.62279 * 118.49000 * 16 15 13 44 44 H 0.96997 * 120.00299 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3546 1.5256 -0.0005 5 6 4.0135 2.7574 -0.0011 6 6 5.3702 2.5059 -0.0010 7 6 6.4454 3.5107 -0.0020 8 8 6.1705 4.6955 -0.0026 9 7 7.7347 3.1180 -0.0011 10 6 8.8050 4.1183 -0.0083 11 1 8.4968 5.0126 0.5334 12 6 9.2140 4.4694 -1.4600 13 6 10.7118 4.0442 -1.5274 14 1 11.1161 3.8675 -2.5242 15 6 11.4719 5.1014 -0.6712 16 6 11.0630 4.7503 0.7805 17 6 10.1110 3.5292 0.6036 18 1 9.9752 2.8954 1.4800 19 7 10.7180 2.8631 -0.5989 20 6 11.1445 1.5760 -0.7900 21 1 11.0656 0.8564 0.0113 22 6 11.6785 1.1963 -2.0138 23 7 11.7744 2.0732 -2.9906 24 14 12.2610 -0.5593 -2.2743 25 1 11.1239 -1.4931 -2.0737 26 1 12.7846 -0.7073 -3.6560 27 1 13.3372 -0.8735 -1.3003 28 7 5.5278 1.1483 -0.0055 29 1 6.3723 0.6711 -0.0096 30 7 4.2530 0.5690 -0.0002 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5138 0.8900 33 1 -0.3633 0.5137 -0.8900 34 1 1.8934 -0.5138 -0.8900 35 1 1.8934 -0.5137 0.8900 36 1 3.5454 3.7307 -0.0021 37 1 7.9539 2.1731 -0.0003 38 1 8.6201 3.8996 -2.1746 39 1 9.1101 5.5394 -1.6401 40 1 12.5491 4.9989 -0.8021 41 1 11.1489 6.1096 -0.9304 42 1 10.5352 5.5843 1.2432 43 1 11.9375 4.4737 1.3696 44 1 12.1471 1.8078 -3.8458 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001097304067.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:50:33 Heat of formation + Delta-G solvation = 27.354629 kcal Electronic energy + Delta-G solvation = -27056.726694 eV Core-core repulsion = 23204.715426 eV Total energy + Delta-G solvation = -3852.011267 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.56824 -41.21423 -39.91609 -39.16966 -35.51425 -34.45848 -33.05014 -31.82769 -31.15493 -30.96249 -30.35981 -29.28958 -26.18445 -25.36263 -24.09548 -22.58234 -22.18933 -21.55960 -21.26716 -20.47654 -19.72449 -18.83848 -18.09853 -17.44758 -17.36557 -16.85390 -16.74445 -16.28681 -15.85423 -15.66285 -15.17832 -15.11591 -14.98793 -14.65368 -14.43156 -13.74001 -13.65693 -13.56493 -13.42800 -12.89954 -12.88356 -12.78820 -12.69618 -12.66419 -12.13354 -12.03405 -11.98534 -11.88286 -11.85443 -11.70154 -11.41370 -11.01610 -10.93066 -10.76612 -10.38976 -10.05794 -9.81378 -8.86773 -7.75246 -5.15030 -0.10199 1.29582 1.36500 1.49721 1.51132 1.56799 1.75180 2.07016 2.33241 2.50478 3.37750 3.45860 3.49091 3.57145 3.98521 4.04861 4.08200 4.11717 4.21099 4.28659 4.39344 4.40695 4.46879 4.49961 4.64255 4.67573 4.79444 4.84439 4.92438 4.94418 5.01014 5.07836 5.18513 5.20458 5.23007 5.39880 5.47006 5.55677 5.68153 5.78457 5.91131 6.16731 6.28824 6.32970 6.45270 6.95323 7.06738 7.73788 8.59121 9.31593 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.014137 B = 0.003346 C = 0.002837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1980.184371 B = 8366.221140 C = 9866.174513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.051 3.949 3 O -0.297 6.297 4 C 0.254 3.746 5 C -0.206 4.206 6 C 0.065 3.935 7 C 0.586 3.414 8 O -0.550 6.550 9 N -0.692 5.692 10 C 0.139 3.861 11 H 0.098 0.902 12 C -0.135 4.135 13 C 0.139 3.861 14 H 0.115 0.885 15 C -0.133 4.133 16 C -0.119 4.119 17 C 0.127 3.873 18 H 0.106 0.894 19 N -0.610 5.610 20 C -0.215 4.215 21 H 0.088 0.912 22 C -0.065 4.065 23 N -0.947 5.947 24 Si 0.971 3.029 25 H -0.278 1.278 26 H -0.304 1.304 27 H -0.283 1.283 28 N -0.435 5.435 29 H 0.456 0.544 30 N -0.324 5.324 31 H 0.101 0.899 32 H 0.068 0.932 33 H 0.066 0.934 34 H 0.063 0.937 35 H 0.066 0.934 36 H 0.172 0.828 37 H 0.405 0.595 38 H 0.036 0.964 39 H 0.071 0.929 40 H 0.036 0.964 41 H 0.072 0.928 42 H 0.084 0.916 43 H 0.059 0.941 44 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.170 -0.825 8.111 17.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.024 4.024 3 O -0.202 6.202 4 C 0.051 3.949 5 C -0.237 4.237 6 C -0.067 4.067 7 C 0.370 3.630 8 O -0.427 6.427 9 N -0.340 5.340 10 C 0.033 3.967 11 H 0.116 0.884 12 C -0.175 4.175 13 C 0.032 3.968 14 H 0.132 0.868 15 C -0.173 4.173 16 C -0.158 4.158 17 C 0.020 3.980 18 H 0.124 0.876 19 N -0.331 5.331 20 C -0.344 4.344 21 H 0.105 0.895 22 C -0.258 4.258 23 N -0.596 5.596 24 Si 0.801 3.199 25 H -0.204 1.204 26 H -0.231 1.231 27 H -0.210 1.210 28 N -0.154 5.154 29 H 0.305 0.695 30 N -0.167 5.167 31 H 0.120 0.880 32 H 0.087 0.913 33 H 0.085 0.915 34 H 0.081 0.919 35 H 0.085 0.915 36 H 0.189 0.811 37 H 0.240 0.760 38 H 0.055 0.945 39 H 0.089 0.911 40 H 0.055 0.945 41 H 0.090 0.910 42 H 0.103 0.897 43 H 0.078 0.922 44 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -15.345 -1.244 7.957 17.330 hybrid contribution 1.115 -0.992 -0.690 1.644 sum -14.231 -2.236 7.268 16.135 Atomic orbital electron populations 1.21819 0.90491 1.04409 1.03603 1.22998 0.97141 0.79931 1.02323 1.86317 1.12989 1.31503 1.89352 1.20323 0.85009 0.91822 0.97698 1.21208 0.89828 0.98722 1.13932 1.21171 0.95124 0.84685 1.05693 1.17114 0.81938 0.86947 0.76986 1.90812 1.83280 1.17182 1.51392 1.45862 1.04576 1.11325 1.72282 1.22605 0.86337 0.90950 0.96854 0.88407 1.23337 0.98759 0.99700 0.95694 1.23599 0.91846 0.84581 0.96762 0.86799 1.22975 0.99119 0.98723 0.96443 1.22830 0.99050 0.97643 0.96307 1.23394 0.90697 0.93210 0.90730 0.87608 1.46731 1.70436 1.06275 1.09692 1.19316 1.32093 0.85809 0.97141 0.89459 1.25387 1.03081 1.00928 0.96383 1.69704 1.52199 1.33927 1.03794 0.85261 0.78168 0.80558 0.75945 1.20387 1.23078 1.20983 1.46156 1.07225 1.03180 1.58886 0.69522 1.77291 0.88451 1.20470 1.30516 0.88048 0.91278 0.91480 0.91880 0.91549 0.81057 0.75953 0.94498 0.91056 0.94527 0.90975 0.89724 0.92224 0.94579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.72 10.28 71.98 0.74 -0.98 16 2 C 0.05 0.91 6.33 71.98 0.46 1.36 16 3 O -0.30 -7.15 10.22 -93.54 -0.96 -8.11 16 4 C 0.25 6.86 7.85 85.13 0.67 7.53 16 5 C -0.21 -5.66 10.63 22.56 0.24 -5.42 16 6 C 0.06 1.80 7.12 40.68 0.29 2.09 16 7 C 0.59 18.10 7.80 86.59 0.68 18.77 16 8 O -0.55 -19.93 16.54 -4.10 -0.07 -20.00 16 9 N -0.69 -20.70 5.07 -438.50 -2.22 -22.92 16 10 C 0.14 4.49 2.80 46.59 0.13 4.62 16 11 H 0.10 3.03 7.23 -2.38 -0.02 3.02 16 12 C -0.13 -5.07 6.23 32.21 0.20 -4.87 16 13 C 0.14 6.00 4.72 46.23 0.22 6.22 16 14 H 0.11 5.94 5.52 -2.39 -0.01 5.93 16 15 C -0.13 -4.83 6.44 32.21 0.21 -4.62 16 16 C -0.12 -3.70 6.44 32.21 0.21 -3.49 16 17 C 0.13 4.28 5.06 46.20 0.23 4.51 16 18 H 0.11 3.22 8.14 -2.38 -0.02 3.20 16 19 N -0.61 -26.69 2.99 -615.28 -1.84 -28.53 16 20 C -0.21 -10.53 10.59 84.03 0.89 -9.64 16 21 H 0.09 4.01 7.83 -2.91 -0.02 3.98 16 22 C -0.07 -3.39 5.50 84.86 0.47 -2.92 16 23 N -0.95 -52.87 10.46 21.65 0.23 -52.65 16 24 Si 0.97 42.90 29.55 68.60 2.03 44.93 16 25 H -0.28 -11.73 7.11 99.48 0.71 -11.02 16 26 H -0.30 -14.01 7.11 99.48 0.71 -13.30 16 27 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 28 N -0.44 -10.81 7.33 -48.20 -0.35 -11.16 16 29 H 0.46 9.31 8.23 -213.36 -1.76 7.55 16 30 N -0.32 -8.68 12.05 -170.74 -2.06 -10.74 16 31 H 0.10 0.75 8.14 -2.39 -0.02 0.73 16 32 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 33 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 34 H 0.06 1.13 8.14 -2.39 -0.02 1.12 16 35 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 36 H 0.17 4.40 8.06 -2.91 -0.02 4.37 16 37 H 0.41 11.35 7.83 -92.71 -0.73 10.63 16 38 H 0.04 1.54 7.98 -2.39 -0.02 1.52 16 39 H 0.07 2.45 7.82 -2.39 -0.02 2.44 16 40 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 41 H 0.07 2.26 7.82 -2.39 -0.02 2.24 16 42 H 0.08 2.15 7.82 -2.39 -0.02 2.13 16 43 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 44 H 0.24 13.61 8.31 -92.71 -0.77 12.84 16 Total: -1.00 -63.20 362.90 -1.06 -64.26 By element: Atomic # 1 Polarization: 33.20 SS G_CDS: -1.44 Total: 31.76 kcal Atomic # 6 Polarization: 7.53 SS G_CDS: 5.62 Total: 13.16 kcal Atomic # 7 Polarization: -119.75 SS G_CDS: -6.24 Total: -126.00 kcal Atomic # 8 Polarization: -27.09 SS G_CDS: -1.02 Total: -28.11 kcal Atomic # 14 Polarization: 42.90 SS G_CDS: 2.03 Total: 44.93 kcal Total: -63.20 -1.06 -64.26 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001097304067.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.614 kcal (2) G-P(sol) polarization free energy of solvation -63.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.410 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.260 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds