Wall clock time and date at job start Tue Mar 31 2020 13:53:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42896 * 109.47215 * 2 1 4 4 C 1.42899 * 114.00220 * 180.02562 * 3 2 1 5 5 C 1.50700 * 109.46965 * 180.02562 * 4 3 2 6 6 O 1.21282 * 120.00472 * 0.02562 * 5 4 3 7 7 N 1.34782 * 119.99824 * 179.97438 * 5 4 3 8 8 C 1.46492 * 119.99982 * 179.97438 * 7 5 4 9 9 H 1.09007 * 110.52096 * 36.10389 * 8 7 5 10 10 C 1.54733 * 110.46490 * 158.66434 * 8 7 5 11 11 C 1.53505 * 101.50024 * 143.00902 * 10 8 7 12 12 C 1.53042 * 115.28544 * 105.27604 * 11 10 8 13 13 N 1.47754 * 85.82086 * 93.68213 * 12 11 10 14 14 C 1.36936 * 134.41257 * 203.99056 * 13 12 11 15 15 H 1.08009 * 120.00458 * 173.47509 * 14 13 12 16 16 C 1.38811 * 120.00263 * 353.47275 * 14 13 12 17 17 N 1.31624 * 119.99754 * 5.08727 * 16 14 13 18 18 Si 1.86804 * 120.00646 * 185.08558 * 16 14 13 19 19 H 1.48489 * 109.46977 * 94.98451 * 18 16 14 20 20 H 1.48495 * 109.46885 * 214.99126 * 18 16 14 21 21 H 1.48500 * 109.46572 * 334.98649 * 18 16 14 22 22 C 1.47755 * 91.17957 * 23.96933 * 13 12 11 23 23 N 1.46166 * 106.64747 * 335.07685 * 11 10 8 24 24 C 1.37262 * 142.22413 * 196.44813 * 23 11 10 25 25 C 1.34531 * 106.91390 * 179.97438 * 24 23 11 26 26 N 1.33979 * 108.04493 * 359.97438 * 25 24 23 27 27 C 1.30858 * 109.35406 * 0.02562 * 26 25 24 28 28 H 1.09000 * 109.47114 * 60.00265 * 1 2 3 29 29 H 1.09004 * 109.46992 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47074 * 299.99433 * 1 2 3 31 31 H 1.08998 * 109.47243 * 239.99619 * 2 1 3 32 32 H 1.09004 * 109.47327 * 120.00211 * 2 1 3 33 33 H 1.08995 * 109.47004 * 59.99834 * 4 3 2 34 34 H 1.09007 * 109.47066 * 299.99740 * 4 3 2 35 35 H 0.96999 * 119.99834 * 0.02562 * 7 5 4 36 36 H 1.09001 * 111.02198 * 24.95634 * 10 8 7 37 37 H 1.09000 * 111.05477 * 261.08017 * 10 8 7 38 38 H 1.08995 * 113.81880 * 207.90160 * 12 11 10 39 39 H 1.09000 * 113.81725 * 339.45832 * 12 11 10 40 40 H 0.96998 * 120.00262 * 180.02562 * 17 16 14 41 41 H 1.08995 * 113.81879 * 221.80303 * 22 13 12 42 42 H 1.09000 * 113.81358 * 90.25122 * 22 13 12 43 43 H 1.07999 * 126.54080 * 359.96501 * 24 23 11 44 44 H 1.08001 * 125.97320 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4309 1.4601 -0.0006 5 6 3.8194 2.9162 0.0001 6 8 2.9609 3.7729 0.0015 7 7 5.1209 3.2663 0.0002 8 6 5.4986 4.6817 0.0003 9 1 4.8001 5.2636 0.6019 10 6 6.9427 4.8563 0.5279 11 6 7.4588 5.9944 -0.3635 12 6 7.5672 7.3605 0.3177 13 7 8.9715 6.9918 0.5917 14 6 9.8976 7.3727 1.5258 15 1 10.8506 6.8672 1.5789 16 6 9.6116 8.4085 2.4045 17 7 8.4154 8.9577 2.4073 18 14 10.9242 9.0231 3.5830 19 1 11.6165 10.1933 2.9862 20 1 10.2903 9.4235 4.8648 21 1 11.9092 7.9406 3.8348 22 6 8.9772 6.0473 -0.5446 23 7 6.6685 5.9548 -1.5925 24 6 6.6541 6.4078 -2.8882 25 6 5.5318 5.9315 -3.4569 26 7 4.8766 5.2076 -2.5394 27 6 5.5509 5.2161 -1.4179 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8900 31 1 1.8933 -0.5139 -0.8899 32 1 1.8934 -0.5139 0.8900 33 1 3.8332 0.9767 -0.8908 34 1 3.8340 0.9764 0.8892 35 1 5.8075 2.5811 -0.0005 36 1 7.5260 3.9476 0.3787 37 1 6.9433 5.1507 1.5774 38 1 7.4587 8.2029 -0.3653 39 1 6.9541 7.4553 1.2140 40 1 8.2156 9.6818 3.0211 41 1 9.4791 5.1038 -0.3302 42 1 9.2927 6.4947 -1.4871 43 1 7.4012 7.0282 -3.3608 44 1 5.2149 6.1022 -4.4751 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001101603921.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:53:34 Heat of formation + Delta-G solvation = 59.505120 kcal Electronic energy + Delta-G solvation = -27058.045375 eV Core-core repulsion = 23207.428258 eV Total energy + Delta-G solvation = -3850.617117 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.27264 -39.67747 -38.59840 -37.77363 -35.45662 -33.40345 -31.95975 -31.69593 -30.71977 -28.19196 -28.04402 -26.99024 -25.37822 -24.25347 -23.02905 -22.19615 -21.26108 -20.90353 -19.73071 -18.68592 -17.41030 -17.17304 -16.94644 -16.61032 -16.11759 -15.76924 -15.01691 -14.94113 -14.61867 -14.33818 -14.11439 -13.96068 -13.72878 -13.45384 -13.19454 -12.95977 -12.82328 -12.65071 -12.45920 -12.13952 -11.85128 -11.62217 -11.61059 -11.47224 -11.16054 -11.02418 -10.95224 -10.60796 -10.21856 -9.92013 -9.83263 -9.74811 -9.51593 -9.21763 -9.02259 -8.99487 -8.03934 -7.18182 -6.00348 -3.35191 2.30903 2.64245 2.71380 3.11585 3.27653 3.33805 3.35548 3.49645 3.83010 4.13160 4.26974 4.46851 4.62117 4.76379 4.79665 4.84421 4.91053 4.94269 4.99839 5.04012 5.08316 5.28574 5.36825 5.39754 5.45615 5.64451 5.65593 5.82744 5.87761 5.88809 5.98413 6.04847 6.15513 6.19773 6.36618 6.74488 6.81571 6.83333 6.89130 7.18917 7.23883 7.42100 7.49191 7.71976 8.25536 8.50710 8.80006 9.46629 10.27710 11.16955 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.017201 B = 0.003004 C = 0.002694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1627.379379 B = 9319.851039 C =10389.326394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.056 3.944 3 O -0.363 6.363 4 C 0.048 3.952 5 C 0.517 3.483 6 O -0.502 6.502 7 N -0.717 5.717 8 C 0.233 3.767 9 H 0.118 0.882 10 C -0.095 4.095 11 C 0.101 3.899 12 C 0.174 3.826 13 N -0.600 5.600 14 C -0.233 4.233 15 H 0.085 0.915 16 C 0.000 4.000 17 N -0.915 5.915 18 Si 0.915 3.085 19 H -0.287 1.287 20 H -0.288 1.288 21 H -0.278 1.278 22 C 0.124 3.876 23 N -0.452 5.452 24 C -0.026 4.026 25 C -0.036 4.036 26 N -0.471 5.471 27 C 0.167 3.833 28 H 0.065 0.935 29 H 0.071 0.929 30 H 0.064 0.936 31 H 0.049 0.951 32 H 0.049 0.951 33 H 0.079 0.921 34 H 0.079 0.921 35 H 0.401 0.599 36 H 0.090 0.910 37 H 0.117 0.883 38 H 0.038 0.962 39 H 0.083 0.917 40 H 0.258 0.742 41 H 0.057 0.943 42 H 0.041 0.959 43 H 0.167 0.833 44 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.592 -17.116 -5.483 19.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.021 4.021 3 O -0.281 6.281 4 C -0.033 4.033 5 C 0.302 3.698 6 O -0.374 6.374 7 N -0.371 5.371 8 C 0.126 3.874 9 H 0.136 0.864 10 C -0.133 4.133 11 C 0.016 3.984 12 C 0.048 3.952 13 N -0.327 5.327 14 C -0.360 4.360 15 H 0.103 0.897 16 C -0.198 4.198 17 N -0.560 5.560 18 Si 0.744 3.256 19 H -0.214 1.214 20 H -0.215 1.215 21 H -0.204 1.204 22 C -0.002 4.002 23 N -0.134 5.134 24 C -0.160 4.160 25 C -0.185 4.185 26 N -0.190 5.190 27 C -0.098 4.098 28 H 0.084 0.916 29 H 0.089 0.911 30 H 0.083 0.917 31 H 0.068 0.932 32 H 0.068 0.932 33 H 0.097 0.903 34 H 0.097 0.903 35 H 0.236 0.764 36 H 0.108 0.892 37 H 0.135 0.865 38 H 0.056 0.944 39 H 0.101 0.899 40 H 0.068 0.932 41 H 0.075 0.925 42 H 0.059 0.941 43 H 0.184 0.816 44 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -7.786 -16.417 -5.271 18.919 hybrid contribution 2.137 0.542 0.326 2.229 sum -5.650 -15.875 -4.945 17.561 Atomic orbital electron populations 1.21731 0.93432 1.02132 1.03573 1.22538 0.96005 0.83452 1.00092 1.88042 1.18465 1.26213 1.95401 1.22149 0.84038 0.94604 1.02460 1.20173 0.82584 0.90544 0.76514 1.90770 1.49042 1.51534 1.46069 1.45748 1.07257 1.07378 1.76755 1.19960 0.97548 0.81885 0.87980 0.86424 1.22580 0.91921 0.97527 1.01322 1.23783 0.92672 1.00709 0.81242 1.22449 0.87081 0.88821 0.96868 1.45772 1.10450 1.47753 1.28713 1.18968 0.95669 1.13697 1.07662 0.89699 1.24877 0.97199 0.97825 0.99914 1.69804 1.19210 1.27322 1.39701 0.86072 0.80568 0.78942 0.79998 1.21422 1.21464 1.20365 1.22713 0.89881 0.95055 0.92600 1.46565 1.20093 1.37389 1.09397 1.22350 1.03092 1.07070 0.83505 1.22228 0.93954 1.02595 0.99763 1.69799 1.29612 1.20940 0.98614 1.24512 0.87641 1.00389 0.97231 0.91619 0.91062 0.91654 0.93232 0.93242 0.90292 0.90301 0.76408 0.89196 0.86491 0.94421 0.89855 0.93152 0.92492 0.94120 0.81557 0.81388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.16 10.28 37.16 0.38 -0.78 16 2 C 0.06 0.47 6.66 37.16 0.25 0.71 16 3 O -0.36 -4.58 9.88 -55.14 -0.54 -5.12 16 4 C 0.05 0.48 6.42 36.01 0.23 0.71 16 5 C 0.52 7.33 7.90 -10.98 -0.09 7.24 16 6 O -0.50 -9.74 16.21 -14.35 -0.23 -9.97 16 7 N -0.72 -8.72 5.16 -53.59 -0.28 -9.00 16 8 C 0.23 3.53 3.23 -67.71 -0.22 3.31 16 9 H 0.12 1.97 7.67 -51.93 -0.40 1.58 16 10 C -0.09 -1.36 6.17 -25.56 -0.16 -1.52 16 11 C 0.10 1.76 1.56 -136.73 -0.21 1.55 16 12 C 0.17 3.83 6.85 -3.34 -0.02 3.81 16 13 N -0.60 -13.96 3.69 -182.67 -0.67 -14.64 16 14 C -0.23 -6.00 10.69 -15.06 -0.16 -6.16 16 15 H 0.09 2.10 7.83 -52.48 -0.41 1.69 16 16 C 0.00 -0.01 5.50 -17.43 -0.10 -0.10 16 17 N -0.92 -25.57 11.52 55.49 0.64 -24.93 16 18 Si 0.91 20.85 29.56 -169.99 -5.02 15.83 16 19 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 20 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 21 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 22 C 0.12 2.30 8.46 -3.35 -0.03 2.27 16 23 N -0.45 -7.83 3.37 -103.51 -0.35 -8.18 16 24 C -0.03 -0.42 12.03 -16.43 -0.20 -0.62 16 25 C -0.04 -0.59 11.86 -17.93 -0.21 -0.81 16 26 N -0.47 -8.98 11.25 -10.49 -0.12 -9.09 16 27 C 0.17 2.96 8.21 -154.59 -1.27 1.69 16 28 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 30 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 31 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 33 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 34 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.40 3.38 8.38 -40.82 -0.34 3.03 16 36 H 0.09 1.05 7.76 -51.93 -0.40 0.64 16 37 H 0.12 1.76 7.92 -51.93 -0.41 1.35 16 38 H 0.04 0.90 8.14 -51.93 -0.42 0.48 16 39 H 0.08 1.99 7.28 -51.93 -0.38 1.62 16 40 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 41 H 0.06 0.96 8.09 -51.93 -0.42 0.54 16 42 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 43 H 0.17 2.26 8.06 -52.49 -0.42 1.84 16 44 H 0.17 2.21 8.06 -52.49 -0.42 1.78 16 LS Contribution 370.42 15.07 5.58 5.58 Total: -1.00 -35.11 370.42 -9.35 -44.46 By element: Atomic # 1 Polarization: 10.29 SS G_CDS: -6.55 Total: 3.74 kcal Atomic # 6 Polarization: 13.13 SS G_CDS: -1.80 Total: 11.33 kcal Atomic # 7 Polarization: -65.06 SS G_CDS: -0.78 Total: -65.84 kcal Atomic # 8 Polarization: -14.32 SS G_CDS: -0.78 Total: -15.10 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.83 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -35.11 -9.35 -44.46 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001101603921.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.969 kcal (2) G-P(sol) polarization free energy of solvation -35.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.464 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds