Wall clock time and date at job start Tue Mar 31 2020 13:53:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42896 * 109.47215 * 2 1 4 4 C 1.42899 * 114.00220 * 180.02562 * 3 2 1 5 5 C 1.50700 * 109.46965 * 180.02562 * 4 3 2 6 6 O 1.21282 * 120.00472 * 0.02562 * 5 4 3 7 7 N 1.34782 * 119.99824 * 179.97438 * 5 4 3 8 8 C 1.46492 * 119.99982 * 179.97438 * 7 5 4 9 9 H 1.09007 * 110.52096 * 36.10389 * 8 7 5 10 10 C 1.54733 * 110.46490 * 158.66434 * 8 7 5 11 11 C 1.53505 * 101.50024 * 143.00902 * 10 8 7 12 12 C 1.53042 * 115.28544 * 105.27604 * 11 10 8 13 13 N 1.47754 * 85.82086 * 93.68213 * 12 11 10 14 14 C 1.36936 * 134.41257 * 203.99056 * 13 12 11 15 15 H 1.08009 * 120.00458 * 173.47509 * 14 13 12 16 16 C 1.38811 * 120.00263 * 353.47275 * 14 13 12 17 17 N 1.31624 * 119.99754 * 5.08727 * 16 14 13 18 18 Si 1.86804 * 120.00646 * 185.08558 * 16 14 13 19 19 H 1.48489 * 109.46977 * 94.98451 * 18 16 14 20 20 H 1.48495 * 109.46885 * 214.99126 * 18 16 14 21 21 H 1.48500 * 109.46572 * 334.98649 * 18 16 14 22 22 C 1.47755 * 91.17957 * 23.96933 * 13 12 11 23 23 N 1.46166 * 106.64747 * 335.07685 * 11 10 8 24 24 C 1.37262 * 142.22413 * 196.44813 * 23 11 10 25 25 C 1.34531 * 106.91390 * 179.97438 * 24 23 11 26 26 N 1.33979 * 108.04493 * 359.97438 * 25 24 23 27 27 C 1.30858 * 109.35406 * 0.02562 * 26 25 24 28 28 H 1.09000 * 109.47114 * 60.00265 * 1 2 3 29 29 H 1.09004 * 109.46992 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47074 * 299.99433 * 1 2 3 31 31 H 1.08998 * 109.47243 * 239.99619 * 2 1 3 32 32 H 1.09004 * 109.47327 * 120.00211 * 2 1 3 33 33 H 1.08995 * 109.47004 * 59.99834 * 4 3 2 34 34 H 1.09007 * 109.47066 * 299.99740 * 4 3 2 35 35 H 0.96999 * 119.99834 * 0.02562 * 7 5 4 36 36 H 1.09001 * 111.02198 * 24.95634 * 10 8 7 37 37 H 1.09000 * 111.05477 * 261.08017 * 10 8 7 38 38 H 1.08995 * 113.81880 * 207.90160 * 12 11 10 39 39 H 1.09000 * 113.81725 * 339.45832 * 12 11 10 40 40 H 0.96998 * 120.00262 * 180.02562 * 17 16 14 41 41 H 1.08995 * 113.81879 * 221.80303 * 22 13 12 42 42 H 1.09000 * 113.81358 * 90.25122 * 22 13 12 43 43 H 1.07999 * 126.54080 * 359.96501 * 24 23 11 44 44 H 1.08001 * 125.97320 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4309 1.4601 -0.0006 5 6 3.8194 2.9162 0.0001 6 8 2.9609 3.7729 0.0015 7 7 5.1209 3.2663 0.0002 8 6 5.4986 4.6817 0.0003 9 1 4.8001 5.2636 0.6019 10 6 6.9427 4.8563 0.5279 11 6 7.4588 5.9944 -0.3635 12 6 7.5672 7.3605 0.3177 13 7 8.9715 6.9918 0.5917 14 6 9.8976 7.3727 1.5258 15 1 10.8506 6.8672 1.5789 16 6 9.6116 8.4085 2.4045 17 7 8.4154 8.9577 2.4073 18 14 10.9242 9.0231 3.5830 19 1 11.6165 10.1933 2.9862 20 1 10.2903 9.4235 4.8648 21 1 11.9092 7.9406 3.8348 22 6 8.9772 6.0473 -0.5446 23 7 6.6685 5.9548 -1.5925 24 6 6.6541 6.4078 -2.8882 25 6 5.5318 5.9315 -3.4569 26 7 4.8766 5.2076 -2.5394 27 6 5.5509 5.2161 -1.4179 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8900 31 1 1.8933 -0.5139 -0.8899 32 1 1.8934 -0.5139 0.8900 33 1 3.8332 0.9767 -0.8908 34 1 3.8340 0.9764 0.8892 35 1 5.8075 2.5811 -0.0005 36 1 7.5260 3.9476 0.3787 37 1 6.9433 5.1507 1.5774 38 1 7.4587 8.2029 -0.3653 39 1 6.9541 7.4553 1.2140 40 1 8.2156 9.6818 3.0211 41 1 9.4791 5.1038 -0.3302 42 1 9.2927 6.4947 -1.4871 43 1 7.4012 7.0282 -3.3608 44 1 5.2149 6.1022 -4.4751 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001101603921.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:53:33 Heat of formation + Delta-G solvation = 35.222357 kcal Electronic energy + Delta-G solvation = -27059.098355 eV Core-core repulsion = 23207.428258 eV Total energy + Delta-G solvation = -3851.670097 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -43.62141 -40.75980 -40.11838 -38.62355 -36.77101 -34.93668 -33.60689 -32.54357 -31.86567 -29.69003 -29.28290 -28.24573 -27.01721 -25.71972 -23.70435 -23.60626 -22.69125 -22.02492 -21.06991 -20.10977 -18.89271 -18.43050 -17.98970 -17.52796 -17.31277 -17.01434 -16.65860 -16.10883 -15.83882 -15.76745 -15.40256 -15.28244 -14.92505 -14.84447 -14.51414 -14.10098 -13.83967 -13.78573 -13.60291 -13.29312 -13.25701 -13.15799 -12.85087 -12.66347 -12.64032 -12.27341 -12.14105 -12.09787 -11.96311 -11.65702 -10.97856 -10.90188 -10.86129 -10.62030 -10.45239 -10.35156 -9.34588 -9.08057 -7.99138 -5.34580 1.01591 1.46897 1.47277 1.54174 1.57441 1.66534 1.85618 2.22411 2.45005 2.83262 3.02335 3.08088 3.25922 3.38002 3.47576 3.60467 3.80561 4.05312 4.15531 4.20559 4.21659 4.24530 4.37277 4.39410 4.54775 4.55992 4.59680 4.67766 4.71819 4.72832 4.84005 4.86237 5.06535 5.06611 5.09068 5.28775 5.30231 5.35774 5.46759 5.77081 5.90744 6.11190 6.14930 6.54203 6.80787 7.17254 7.25938 7.51526 8.38868 9.18155 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.017201 B = 0.003004 C = 0.002694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1627.379379 B = 9319.851039 C =10389.326394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.050 3.950 3 O -0.406 6.406 4 C 0.052 3.948 5 C 0.511 3.489 6 O -0.566 6.566 7 N -0.698 5.698 8 C 0.238 3.762 9 H 0.092 0.908 10 C -0.081 4.081 11 C 0.123 3.877 12 C 0.170 3.830 13 N -0.623 5.623 14 C -0.233 4.233 15 H 0.096 0.904 16 C -0.060 4.060 17 N -0.952 5.952 18 Si 0.978 3.022 19 H -0.292 1.292 20 H -0.297 1.297 21 H -0.260 1.260 22 C 0.131 3.869 23 N -0.458 5.458 24 C -0.031 4.031 25 C -0.041 4.041 26 N -0.504 5.504 27 C 0.156 3.844 28 H 0.050 0.950 29 H 0.097 0.903 30 H 0.052 0.948 31 H 0.066 0.934 32 H 0.070 0.930 33 H 0.107 0.893 34 H 0.117 0.883 35 H 0.423 0.577 36 H 0.130 0.870 37 H 0.109 0.891 38 H 0.010 0.990 39 H 0.054 0.946 40 H 0.250 0.750 41 H 0.088 0.912 42 H 0.046 0.954 43 H 0.190 0.810 44 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.912 -20.142 -6.061 21.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.026 4.026 3 O -0.325 6.325 4 C -0.027 4.027 5 C 0.298 3.702 6 O -0.442 6.442 7 N -0.354 5.354 8 C 0.129 3.871 9 H 0.110 0.890 10 C -0.120 4.120 11 C 0.038 3.962 12 C 0.044 3.956 13 N -0.350 5.350 14 C -0.360 4.360 15 H 0.114 0.886 16 C -0.254 4.254 17 N -0.599 5.599 18 Si 0.806 3.194 19 H -0.220 1.220 20 H -0.224 1.224 21 H -0.184 1.184 22 C 0.005 3.995 23 N -0.141 5.141 24 C -0.164 4.164 25 C -0.189 4.189 26 N -0.224 5.224 27 C -0.108 4.108 28 H 0.069 0.931 29 H 0.116 0.884 30 H 0.072 0.928 31 H 0.084 0.916 32 H 0.088 0.912 33 H 0.125 0.875 34 H 0.135 0.865 35 H 0.262 0.738 36 H 0.148 0.852 37 H 0.127 0.873 38 H 0.028 0.972 39 H 0.073 0.927 40 H 0.059 0.941 41 H 0.106 0.894 42 H 0.064 0.936 43 H 0.207 0.793 44 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges -6.056 -19.518 -5.887 21.267 hybrid contribution 1.572 1.479 0.399 2.195 sum -4.483 -18.039 -5.488 19.381 Atomic orbital electron populations 1.21789 0.93573 1.03439 1.02265 1.22776 0.96030 0.81942 1.01866 1.87998 1.19848 1.28860 1.95808 1.22277 0.83464 0.91455 1.05499 1.21079 0.82241 0.92076 0.74817 1.90744 1.50788 1.53604 1.49100 1.45548 1.07591 1.06593 1.75628 1.19746 0.97470 0.83350 0.86492 0.88984 1.22563 0.91563 0.97809 1.00027 1.23357 0.92576 0.98787 0.81523 1.22242 0.86816 0.90868 0.95695 1.46011 1.10560 1.48480 1.29917 1.19386 0.96172 1.13027 1.07461 0.88593 1.25674 0.98922 0.98681 1.02148 1.69993 1.21104 1.27999 1.40840 0.85072 0.78405 0.78436 0.77503 1.21974 1.22362 1.18397 1.22849 0.90515 0.95028 0.91092 1.46589 1.20113 1.37719 1.09672 1.22833 1.03640 1.06848 0.83095 1.22749 0.93661 1.01798 1.00654 1.69799 1.30570 1.22333 0.99692 1.24906 0.87553 1.00598 0.97791 0.93069 0.88419 0.92837 0.91563 0.91159 0.87504 0.86492 0.73793 0.85172 0.87268 0.97216 0.92742 0.94075 0.89418 0.93587 0.79255 0.78650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.19 10.28 71.98 0.74 -1.45 16 2 C 0.05 0.72 6.66 71.98 0.48 1.20 16 3 O -0.41 -9.76 9.88 -129.94 -1.28 -11.04 16 4 C 0.05 0.92 6.42 71.24 0.46 1.38 16 5 C 0.51 14.03 7.90 87.66 0.69 14.72 16 6 O -0.57 -22.62 16.21 16.00 0.26 -22.36 16 7 N -0.70 -15.76 5.16 -441.83 -2.28 -18.04 16 8 C 0.24 7.09 3.23 45.14 0.15 7.24 16 9 H 0.09 3.24 7.67 -2.38 -0.02 3.23 16 10 C -0.08 -2.19 6.17 31.35 0.19 -2.00 16 11 C 0.12 4.18 1.56 5.61 0.01 4.19 16 12 C 0.17 7.72 6.85 86.15 0.59 8.31 16 13 N -0.62 -28.68 3.69 -731.83 -2.70 -31.38 16 14 C -0.23 -11.83 10.69 84.03 0.90 -10.93 16 15 H 0.10 4.56 7.83 -2.91 -0.02 4.53 16 16 C -0.06 -3.23 5.50 84.86 0.47 -2.76 16 17 N -0.95 -54.94 11.52 21.65 0.25 -54.69 16 18 Si 0.98 43.03 29.56 68.60 2.03 45.06 16 19 H -0.29 -12.99 7.11 99.48 0.71 -12.28 16 20 H -0.30 -13.33 7.11 99.48 0.71 -12.63 16 21 H -0.26 -10.52 7.11 99.48 0.71 -9.81 16 22 C 0.13 4.54 8.46 86.14 0.73 5.27 16 23 N -0.46 -15.42 3.37 -481.41 -1.62 -17.04 16 24 C -0.03 -0.97 12.03 82.99 1.00 0.03 16 25 C -0.04 -1.28 11.86 83.52 0.99 -0.29 16 26 N -0.50 -18.97 11.25 -187.11 -2.11 -21.08 16 27 C 0.16 5.45 8.21 138.31 1.14 6.59 16 28 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 29 H 0.10 0.83 8.14 -2.39 -0.02 0.81 16 30 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 31 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 32 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 33 H 0.11 1.30 8.14 -2.39 -0.02 1.28 16 34 H 0.12 1.17 8.14 -2.38 -0.02 1.15 16 35 H 0.42 5.64 8.38 -92.71 -0.78 4.86 16 36 H 0.13 2.48 7.76 -2.39 -0.02 2.46 16 37 H 0.11 3.20 7.92 -2.39 -0.02 3.18 16 38 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16 39 H 0.05 2.76 7.28 -2.39 -0.02 2.74 16 40 H 0.25 14.21 8.31 -92.71 -0.77 13.44 16 41 H 0.09 2.56 8.09 -2.39 -0.02 2.54 16 42 H 0.05 1.59 8.14 -2.39 -0.02 1.58 16 43 H 0.19 4.77 8.06 -2.91 -0.02 4.74 16 44 H 0.20 4.76 8.06 -2.91 -0.02 4.74 16 Total: -1.00 -80.25 370.42 1.31 -78.94 By element: Atomic # 1 Polarization: 19.89 SS G_CDS: 0.24 Total: 20.13 kcal Atomic # 6 Polarization: 22.98 SS G_CDS: 8.53 Total: 31.50 kcal Atomic # 7 Polarization: -133.78 SS G_CDS: -8.46 Total: -142.23 kcal Atomic # 8 Polarization: -32.37 SS G_CDS: -1.02 Total: -33.40 kcal Atomic # 14 Polarization: 43.03 SS G_CDS: 2.03 Total: 45.06 kcal Total: -80.25 1.31 -78.94 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001101603921.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.165 kcal (2) G-P(sol) polarization free energy of solvation -80.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.942 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds