Wall clock time and date at job start Tue Mar 31 2020 12:59:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42899 * 113.99778 * 2 1 4 4 H 1.08998 * 109.47145 * 29.99590 * 3 2 1 5 5 C 1.52996 * 109.47031 * 269.99750 * 3 2 1 6 6 C 1.50701 * 109.46888 * 149.99727 * 3 2 1 7 7 O 1.21279 * 120.00036 * 5.00016 * 6 3 2 8 8 N 1.34775 * 119.99744 * 184.99365 * 6 3 2 9 9 C 1.46501 * 119.99945 * 180.02562 * 8 6 3 10 10 H 1.08994 * 110.41412 * 32.51829 * 9 8 6 11 11 C 1.54731 * 110.46468 * 155.00480 * 9 8 6 12 12 C 1.53508 * 101.52526 * 94.46051 * 11 9 8 13 13 C 1.53009 * 115.33845 * 254.43781 * 12 11 9 14 14 N 1.47769 * 85.83255 * 220.13042 * 13 12 11 15 15 C 1.36932 * 134.41328 * 203.95809 * 14 13 12 16 16 H 1.07998 * 120.00080 * 180.02562 * 15 14 13 17 17 C 1.38819 * 120.00051 * 0.02562 * 15 14 13 18 18 N 1.31617 * 119.99564 * 0.02562 * 17 15 14 19 19 Si 1.86801 * 120.00020 * 180.02562 * 17 15 14 20 20 H 1.48497 * 109.47192 * 59.99888 * 19 17 15 21 21 H 1.48495 * 109.46932 * 180.02562 * 19 17 15 22 22 H 1.48502 * 109.47002 * 300.00180 * 19 17 15 23 23 C 1.47752 * 91.17160 * 23.97609 * 14 13 12 24 24 N 1.46162 * 106.65622 * 24.76985 * 12 11 9 25 25 C 1.37273 * 142.20100 * 163.76972 * 24 12 11 26 26 C 1.34518 * 106.91552 * 180.17458 * 25 24 12 27 27 N 1.33981 * 108.04579 * 359.94694 * 26 25 24 28 28 C 1.30855 * 109.35328 * 359.89813 * 27 26 25 29 29 H 1.09000 * 109.47187 * 300.00233 * 1 2 3 30 30 H 1.09001 * 109.46558 * 60.00281 * 1 2 3 31 31 H 1.09001 * 109.47103 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.47460 * 300.00074 * 5 3 2 33 33 H 1.08997 * 109.47597 * 59.99980 * 5 3 2 34 34 H 1.09001 * 109.47120 * 180.02562 * 5 3 2 35 35 H 0.96999 * 120.00318 * 0.02562 * 8 6 3 36 36 H 1.09002 * 111.01420 * 212.52188 * 11 9 8 37 37 H 1.08996 * 111.01525 * 336.36191 * 11 9 8 38 38 H 1.08996 * 113.81644 * 334.35656 * 13 12 11 39 39 H 1.09001 * 113.81591 * 105.90761 * 13 12 11 40 40 H 0.97004 * 119.99661 * 179.97438 * 18 17 15 41 41 H 1.09001 * 113.81808 * 221.80162 * 23 14 13 42 42 H 1.08998 * 113.82142 * 90.25496 * 23 14 13 43 43 H 1.07999 * 126.54145 * 0.11180 * 25 24 12 44 44 H 1.07999 * 125.98018 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3449 1.9994 0.5138 5 6 2.2177 1.7713 -1.4425 6 6 3.3386 1.2639 0.7105 7 8 3.7896 0.2045 1.0915 8 7 4.0254 2.4040 0.9224 9 6 5.3170 2.3636 1.6125 10 1 5.8392 1.4337 1.3877 11 6 6.1832 3.5812 1.2111 12 6 5.8587 4.5731 2.3368 13 6 4.9356 5.7289 1.9453 14 7 5.8146 6.5721 2.7819 15 6 5.6543 7.7577 3.4480 16 1 6.4774 8.1793 4.0058 17 6 4.4339 8.4178 3.4062 18 7 3.4307 7.9038 2.7268 19 14 4.2154 10.0356 4.3143 20 1 5.1810 11.0332 3.7876 21 1 2.8305 10.5326 4.1139 22 1 4.4608 9.8265 5.7639 23 6 6.9358 5.6249 2.6120 24 7 5.4347 3.7771 3.4871 25 6 5.2348 3.8515 4.8432 26 6 4.8141 2.6382 5.2439 27 7 4.7560 1.8427 4.1674 28 6 5.1237 2.5181 3.1087 29 1 -0.3633 0.5139 0.8900 30 1 -0.3632 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 2.8830 1.0774 -1.9563 33 1 1.2569 1.8014 -1.9564 34 1 2.6614 2.7669 -1.4425 35 1 3.6645 3.2513 0.6179 36 1 7.2425 3.3240 1.2100 37 1 5.8780 3.9756 0.2419 38 1 4.9670 5.9773 0.8845 39 1 3.9210 5.6321 2.3317 40 1 2.5777 8.3648 2.6979 41 1 7.5029 5.4456 3.5254 42 1 7.5689 5.8419 1.7517 43 1 5.3872 4.7184 5.4690 44 1 4.5661 2.3551 6.2562 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001101611971.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:59:32 Heat of formation + Delta-G solvation = 63.268237 kcal Electronic energy + Delta-G solvation = -27991.350198 eV Core-core repulsion = 24140.896262 eV Total energy + Delta-G solvation = -3850.453936 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.22329 -39.84894 -38.51370 -37.62648 -35.47434 -33.33368 -32.13649 -31.48171 -30.25249 -28.29768 -27.31232 -26.94828 -25.39176 -24.92209 -23.67177 -21.82447 -21.30203 -20.56389 -19.89775 -18.69874 -17.52663 -17.15286 -16.98751 -16.22783 -15.64174 -15.27707 -15.01912 -14.78889 -14.69209 -14.24795 -14.14922 -13.97688 -13.58125 -13.34820 -13.29607 -13.11104 -12.80382 -12.57084 -12.36468 -12.25095 -12.01945 -11.90458 -11.74777 -11.35735 -11.30459 -10.98502 -10.71642 -10.41390 -10.10952 -10.06700 -9.80628 -9.53709 -9.46211 -9.20298 -9.03902 -8.92498 -7.93391 -7.17425 -5.99177 -3.33151 2.34791 2.68590 2.90374 3.20998 3.27466 3.31907 3.32876 3.60586 3.93889 4.05512 4.26756 4.49459 4.59575 4.74820 4.76160 4.79584 4.89191 4.98337 5.12233 5.22668 5.32651 5.36329 5.46115 5.49647 5.51975 5.54811 5.73481 5.74938 5.77504 5.88815 5.98224 6.11612 6.16956 6.20276 6.40266 6.67889 6.86928 6.87606 6.92265 7.22696 7.30894 7.48323 7.61949 7.73427 8.27645 8.60490 8.80840 9.47988 10.28735 11.17786 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.014051 B = 0.003967 C = 0.003588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1992.280768 B = 7056.890684 C = 7802.306539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.360 6.360 3 C 0.069 3.931 4 H 0.088 0.912 5 C -0.170 4.170 6 C 0.519 3.481 7 O -0.506 6.506 8 N -0.715 5.715 9 C 0.234 3.766 10 H 0.115 0.885 11 C -0.122 4.122 12 C 0.098 3.902 13 C 0.167 3.833 14 N -0.604 5.604 15 C -0.231 4.231 16 H 0.082 0.918 17 C 0.000 4.000 18 N -0.920 5.920 19 Si 0.914 3.086 20 H -0.284 1.284 21 H -0.288 1.288 22 H -0.283 1.283 23 C 0.121 3.879 24 N -0.429 5.429 25 C 0.003 3.997 26 C -0.046 4.046 27 N -0.467 5.467 28 C 0.154 3.846 29 H 0.044 0.956 30 H 0.043 0.957 31 H 0.089 0.911 32 H 0.071 0.929 33 H 0.069 0.931 34 H 0.075 0.925 35 H 0.404 0.596 36 H 0.101 0.899 37 H 0.107 0.893 38 H 0.047 0.953 39 H 0.081 0.919 40 H 0.257 0.743 41 H 0.052 0.948 42 H 0.056 0.944 43 H 0.169 0.831 44 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.887 -9.385 -7.827 12.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.277 6.277 3 C 0.008 3.992 4 H 0.106 0.894 5 C -0.227 4.227 6 C 0.304 3.696 7 O -0.379 6.379 8 N -0.370 5.370 9 C 0.127 3.873 10 H 0.133 0.867 11 C -0.161 4.161 12 C 0.012 3.988 13 C 0.041 3.959 14 N -0.331 5.331 15 C -0.358 4.358 16 H 0.099 0.901 17 C -0.198 4.198 18 N -0.566 5.566 19 Si 0.744 3.256 20 H -0.210 1.210 21 H -0.214 1.214 22 H -0.209 1.209 23 C -0.005 4.005 24 N -0.110 5.110 25 C -0.132 4.132 26 C -0.195 4.195 27 N -0.186 5.186 28 C -0.109 4.109 29 H 0.063 0.937 30 H 0.061 0.939 31 H 0.108 0.892 32 H 0.090 0.910 33 H 0.088 0.912 34 H 0.094 0.906 35 H 0.239 0.761 36 H 0.120 0.880 37 H 0.126 0.874 38 H 0.064 0.936 39 H 0.099 0.901 40 H 0.067 0.933 41 H 0.070 0.930 42 H 0.073 0.927 43 H 0.186 0.814 44 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -0.822 -10.642 -7.421 13.000 hybrid contribution -0.439 2.707 0.575 2.802 sum -1.261 -7.936 -6.846 10.556 Atomic orbital electron populations 1.22879 0.80682 1.03128 1.00109 1.88037 1.19609 1.25163 1.94935 1.21926 0.93594 0.86922 0.96766 0.89444 1.22229 1.03441 1.02180 0.94896 1.20332 0.86010 0.84074 0.79217 1.90743 1.68501 1.29640 1.49018 1.45908 1.21636 1.09843 1.59618 1.19648 0.84335 1.00790 0.82566 0.86740 1.22855 1.01006 0.93220 0.99053 1.22963 1.00866 0.91660 0.83283 1.22540 0.96332 0.82404 0.94611 1.45947 1.07191 1.23698 1.56242 1.18935 0.97191 0.95974 1.23744 0.90072 1.24770 0.95828 0.99096 1.00068 1.69759 1.02570 1.39692 1.44584 0.86174 0.77049 0.82940 0.79444 1.21013 1.21416 1.20923 1.22759 0.91719 0.86751 0.99311 1.45789 1.47187 1.11787 1.06218 1.22424 1.07436 1.00900 0.82414 1.22189 1.08976 0.90247 0.98078 1.69790 1.19305 1.32629 0.96840 1.24429 1.06384 0.83589 0.96514 0.93722 0.93875 0.89222 0.91025 0.91248 0.90631 0.76066 0.88010 0.87444 0.93568 0.90102 0.93348 0.92962 0.92686 0.81357 0.81399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 10.82 101.05 1.09 1.36 16 2 O -0.36 -4.84 9.89 -55.09 -0.54 -5.38 16 3 C 0.07 0.82 3.13 -27.88 -0.09 0.73 16 4 H 0.09 0.92 7.79 -51.93 -0.40 0.51 16 5 C -0.17 -1.48 9.48 37.16 0.35 -1.13 16 6 C 0.52 7.76 7.18 -10.99 -0.08 7.68 16 7 O -0.51 -9.79 16.16 -14.30 -0.23 -10.02 16 8 N -0.72 -9.51 5.06 -53.59 -0.27 -9.78 16 9 C 0.23 3.39 3.29 -67.70 -0.22 3.16 16 10 H 0.11 1.67 7.55 -51.93 -0.39 1.28 16 11 C -0.12 -1.48 6.12 -25.56 -0.16 -1.64 16 12 C 0.10 1.64 1.55 -136.72 -0.21 1.43 16 13 C 0.17 3.40 6.97 -3.34 -0.02 3.38 16 14 N -0.60 -13.88 3.70 -182.62 -0.68 -14.56 16 15 C -0.23 -6.01 10.70 -15.06 -0.16 -6.17 16 16 H 0.08 2.05 7.83 -52.49 -0.41 1.64 16 17 C 0.00 -0.01 5.50 -17.43 -0.10 -0.11 16 18 N -0.92 -25.33 11.39 55.49 0.63 -24.70 16 19 Si 0.91 21.02 29.55 -169.99 -5.02 16.00 16 20 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 21 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 22 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 23 C 0.12 2.18 8.44 -3.34 -0.03 2.16 16 24 N -0.43 -7.89 3.37 -103.50 -0.35 -8.24 16 25 C 0.00 0.05 12.03 -16.43 -0.20 -0.14 16 26 C -0.05 -0.85 11.86 -17.93 -0.21 -1.06 16 27 N -0.47 -9.46 11.25 -10.50 -0.12 -9.58 16 28 C 0.15 2.83 8.23 -154.60 -1.27 1.56 16 29 H 0.04 0.40 8.08 -51.93 -0.42 -0.02 16 30 H 0.04 0.31 7.87 -51.93 -0.41 -0.10 16 31 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.07 0.51 7.87 -51.93 -0.41 0.10 16 34 H 0.07 0.55 7.92 -51.93 -0.41 0.13 16 35 H 0.40 4.61 8.41 -40.82 -0.34 4.26 16 36 H 0.10 1.03 8.14 -51.93 -0.42 0.61 16 37 H 0.11 1.06 7.76 -51.93 -0.40 0.65 16 38 H 0.05 0.89 7.95 -51.93 -0.41 0.48 16 39 H 0.08 1.93 7.19 -51.93 -0.37 1.55 16 40 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 41 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 42 H 0.06 0.88 8.13 -51.93 -0.42 0.46 16 43 H 0.17 3.11 8.06 -52.49 -0.42 2.69 16 44 H 0.17 2.56 8.06 -52.49 -0.42 2.14 16 LS Contribution 368.36 15.07 5.55 5.55 Total: -1.00 -35.04 368.36 -8.82 -43.85 By element: Atomic # 1 Polarization: 12.13 SS G_CDS: -6.48 Total: 5.65 kcal Atomic # 6 Polarization: 12.51 SS G_CDS: -1.30 Total: 11.21 kcal Atomic # 7 Polarization: -66.07 SS G_CDS: -0.78 Total: -66.86 kcal Atomic # 8 Polarization: -14.63 SS G_CDS: -0.78 Total: -15.40 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -35.04 -8.82 -43.85 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001101611971.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.121 kcal (2) G-P(sol) polarization free energy of solvation -35.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.853 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds