Wall clock time and date at job start Tue Mar 31 2020 12:59:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42896 * 114.00208 * 2 1 4 4 H 1.08999 * 109.46873 * 330.00042 * 3 2 1 5 5 C 1.53007 * 109.47231 * 89.99417 * 3 2 1 6 6 C 1.50693 * 109.47591 * 210.00008 * 3 2 1 7 7 O 1.21283 * 119.99987 * 354.99597 * 6 3 2 8 8 N 1.34777 * 120.00411 * 174.99720 * 6 3 2 9 9 C 1.46503 * 120.00342 * 180.02562 * 8 6 3 10 10 H 1.09000 * 110.41271 * 327.48315 * 9 8 6 11 11 C 1.54754 * 110.46546 * 205.00148 * 9 8 6 12 12 C 1.53390 * 101.45082 * 265.48208 * 11 9 8 13 13 C 1.52457 * 115.84511 * 106.82793 * 12 11 9 14 14 N 1.47262 * 87.71888 * 90.71982 * 13 12 11 15 15 C 1.36934 * 135.94207 * 206.21142 * 14 13 12 16 16 H 1.08000 * 120.00025 * 7.54675 * 15 14 13 17 17 C 1.38808 * 120.00008 * 187.54150 * 15 14 13 18 18 N 1.31622 * 120.00100 * 174.49468 * 17 15 14 19 19 Si 1.86798 * 120.00095 * 354.49896 * 17 15 14 20 20 H 1.48494 * 109.47323 * 174.95511 * 19 17 15 21 21 H 1.48504 * 109.47327 * 294.95734 * 19 17 15 22 22 H 1.48501 * 109.46906 * 54.95487 * 19 17 15 23 23 C 1.47268 * 88.11379 * 26.46676 * 14 13 12 24 24 N 1.46040 * 106.81144 * 335.19115 * 12 11 9 25 25 C 1.37275 * 142.31440 * 196.37469 * 24 12 11 26 26 C 1.34520 * 106.92410 * 179.88818 * 25 24 12 27 27 N 1.33971 * 108.05033 * 0.02562 * 26 25 24 28 28 C 1.30852 * 109.36012 * 0.04214 * 27 26 25 29 29 H 1.08999 * 109.47358 * 299.99747 * 1 2 3 30 30 H 1.09000 * 109.47187 * 60.00098 * 1 2 3 31 31 H 1.09004 * 109.47216 * 179.97438 * 1 2 3 32 32 H 1.08993 * 109.47301 * 300.00491 * 5 3 2 33 33 H 1.08999 * 109.46682 * 60.00508 * 5 3 2 34 34 H 1.09007 * 109.46861 * 180.02562 * 5 3 2 35 35 H 0.97000 * 119.99563 * 359.97438 * 8 6 3 36 36 H 1.09002 * 111.03029 * 147.44136 * 11 9 8 37 37 H 1.09005 * 111.06308 * 23.53531 * 11 9 8 38 38 H 1.09002 * 113.51735 * 336.00755 * 13 12 11 39 39 H 1.08997 * 113.57045 * 205.43876 * 13 12 11 40 40 H 0.96999 * 119.99406 * 354.90961 * 18 17 15 41 41 H 1.09002 * 113.50347 * 88.23992 * 23 14 13 42 42 H 1.09000 * 113.51134 * 218.81142 * 23 14 13 43 43 H 1.07997 * 126.53464 * 359.86276 * 25 24 12 44 44 H 1.08006 * 125.97088 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3449 1.9993 -0.5138 5 6 2.2175 1.7714 1.4426 6 6 3.3386 1.2639 -0.7104 7 8 3.7897 0.2045 -1.0913 8 7 4.0254 2.4040 -0.9224 9 6 5.3165 2.3637 -1.6135 10 1 5.8388 1.4336 -1.3894 11 6 6.1833 3.5812 -1.2121 12 6 5.8583 4.5709 -2.3380 13 6 4.9634 5.7440 -1.9539 14 7 6.1877 6.4969 -1.6334 15 6 6.5160 7.5333 -0.8009 16 1 5.7925 7.9055 -0.0907 17 6 7.7788 8.1055 -0.8697 18 7 8.0593 9.1698 -0.1478 19 14 9.0801 7.3653 -1.9869 20 1 10.2912 8.2245 -1.9732 21 1 9.4321 6.0058 -1.5038 22 1 8.5514 7.2770 -3.3718 23 6 6.9032 5.6520 -2.6045 24 7 5.4349 3.7775 -3.4886 25 6 5.2364 3.8509 -4.8449 26 6 4.8127 2.6384 -5.2448 27 7 4.7518 1.8439 -4.1678 28 6 5.1219 2.5187 -3.1096 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 1.2568 1.8015 1.9563 33 1 2.8828 1.0775 1.9564 34 1 2.6605 2.7674 1.4425 35 1 3.6644 3.2513 -0.6180 36 1 7.2426 3.3240 -1.2111 37 1 5.8782 3.9770 -0.2433 38 1 4.3350 5.5456 -1.0856 39 1 4.4048 6.1590 -2.7928 40 1 7.3637 9.5980 0.3753 41 1 6.8761 6.0413 -3.6223 42 1 7.9078 5.3764 -2.2840 43 1 5.3906 4.7170 -5.4714 44 1 4.5642 2.3552 -6.2570 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001101611973.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:59:39 Heat of formation + Delta-G solvation = 70.630976 kcal Electronic energy + Delta-G solvation = -27886.443273 eV Core-core repulsion = 24036.308609 eV Total energy + Delta-G solvation = -3850.134664 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.55611 -40.01571 -39.14486 -37.78940 -35.68237 -33.58577 -32.41421 -31.86893 -30.46799 -28.43572 -27.68458 -27.07289 -25.99496 -24.98655 -23.74136 -22.11062 -21.15709 -20.73764 -20.03468 -19.09226 -17.83084 -17.65182 -17.32304 -16.50009 -16.18912 -15.64198 -15.27632 -15.07304 -14.87764 -14.51640 -14.26644 -14.04978 -13.92457 -13.49912 -13.44813 -13.31466 -13.18247 -12.89102 -12.66031 -12.38558 -12.14667 -12.02716 -12.00240 -11.47694 -11.39511 -11.36074 -10.85125 -10.62189 -10.24537 -9.86399 -9.70578 -9.65726 -9.42527 -9.36340 -9.19500 -9.12186 -8.26831 -7.50818 -6.53856 -3.52667 2.04284 2.51611 2.66453 2.85701 3.21868 3.25005 3.34493 3.45418 3.76876 3.90338 4.23041 4.37436 4.38835 4.44583 4.54841 4.57477 4.62170 4.75126 5.00242 5.08374 5.09273 5.24718 5.24975 5.30484 5.36516 5.40512 5.43855 5.57117 5.66018 5.78450 5.79959 5.81140 5.83438 5.84929 5.89047 6.23704 6.23937 6.53824 6.67574 6.73963 6.98905 7.21224 7.33432 7.98753 8.11758 8.30164 8.70552 9.20756 10.00516 10.95580 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.015576 B = 0.003985 C = 0.003414 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1797.150550 B = 7025.288441 C = 8198.761666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.359 6.359 3 C 0.071 3.929 4 H 0.086 0.914 5 C -0.171 4.171 6 C 0.518 3.482 7 O -0.503 6.503 8 N -0.716 5.716 9 C 0.229 3.771 10 H 0.120 0.880 11 C -0.097 4.097 12 C 0.106 3.894 13 C 0.128 3.872 14 N -0.612 5.612 15 C -0.313 4.313 16 H 0.089 0.911 17 C -0.016 4.016 18 N -0.924 5.924 19 Si 1.063 2.937 20 H -0.290 1.290 21 H -0.290 1.290 22 H -0.287 1.287 23 C 0.102 3.898 24 N -0.452 5.452 25 C -0.025 4.025 26 C -0.032 4.032 27 N -0.465 5.465 28 C 0.167 3.833 29 H 0.043 0.957 30 H 0.043 0.957 31 H 0.090 0.910 32 H 0.069 0.931 33 H 0.072 0.928 34 H 0.074 0.926 35 H 0.402 0.598 36 H 0.107 0.893 37 H 0.116 0.884 38 H 0.056 0.944 39 H 0.046 0.954 40 H 0.264 0.736 41 H 0.054 0.946 42 H 0.068 0.932 43 H 0.169 0.831 44 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.810 -12.544 -0.990 17.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.277 6.277 3 C 0.009 3.991 4 H 0.104 0.896 5 C -0.229 4.229 6 C 0.303 3.697 7 O -0.375 6.375 8 N -0.371 5.371 9 C 0.122 3.878 10 H 0.138 0.862 11 C -0.136 4.136 12 C 0.021 3.979 13 C 0.000 4.000 14 N -0.340 5.340 15 C -0.438 4.438 16 H 0.106 0.894 17 C -0.216 4.216 18 N -0.564 5.564 19 Si 0.895 3.105 20 H -0.217 1.217 21 H -0.218 1.218 22 H -0.214 1.214 23 C -0.025 4.025 24 N -0.135 5.135 25 C -0.158 4.158 26 C -0.181 4.181 27 N -0.184 5.184 28 C -0.097 4.097 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.109 0.891 32 H 0.088 0.912 33 H 0.092 0.908 34 H 0.093 0.907 35 H 0.237 0.763 36 H 0.125 0.875 37 H 0.134 0.866 38 H 0.074 0.926 39 H 0.063 0.937 40 H 0.074 0.926 41 H 0.071 0.929 42 H 0.085 0.915 43 H 0.187 0.813 44 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -9.894 -13.728 -1.533 16.991 hybrid contribution -1.906 1.675 0.128 2.541 sum -11.801 -12.053 -1.404 16.926 Atomic orbital electron populations 1.22881 0.80623 1.03246 1.00033 1.88049 1.19642 1.25052 1.94918 1.21912 0.93408 0.86955 0.96784 0.89630 1.22245 1.03544 1.02254 0.94843 1.20364 0.86087 0.84052 0.79215 1.90757 1.68450 1.29543 1.48764 1.45914 1.21622 1.09827 1.59775 1.19776 0.84452 1.01276 0.82279 0.86245 1.22562 1.01400 0.91338 0.98304 1.23141 1.00148 0.90835 0.83753 1.22522 0.91363 0.87857 0.98245 1.45844 1.03883 1.39837 1.44476 1.20120 1.01421 1.08664 1.13632 0.89381 1.25720 0.97926 0.96521 1.01427 1.70921 1.36004 1.18906 1.30574 0.83811 0.76428 0.74695 0.75565 1.21667 1.21755 1.21440 1.22961 0.96165 0.88031 0.95302 1.46439 1.47622 1.12974 1.06482 1.22415 1.09479 1.01621 0.82302 1.22278 1.07708 0.89959 0.98186 1.69841 1.19376 1.32395 0.96805 1.24527 1.05089 0.83408 0.96653 0.93828 0.93814 0.89126 0.91179 0.90846 0.90673 0.76263 0.87497 0.86611 0.92578 0.93688 0.92564 0.92894 0.91472 0.81339 0.81106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 10.82 101.05 1.09 1.32 16 2 O -0.36 -4.40 9.89 -55.09 -0.54 -4.94 16 3 C 0.07 0.74 3.13 -27.88 -0.09 0.65 16 4 H 0.09 0.72 7.79 -51.93 -0.40 0.31 16 5 C -0.17 -1.35 9.48 37.16 0.35 -1.00 16 6 C 0.52 7.06 7.18 -10.99 -0.08 6.99 16 7 O -0.50 -9.15 16.16 -14.30 -0.23 -9.38 16 8 N -0.72 -8.54 5.06 -53.57 -0.27 -8.81 16 9 C 0.23 3.13 3.29 -67.68 -0.22 2.91 16 10 H 0.12 1.69 7.55 -51.93 -0.39 1.30 16 11 C -0.10 -1.30 6.13 -25.61 -0.16 -1.45 16 12 C 0.11 1.67 1.66 -133.40 -0.22 1.45 16 13 C 0.13 2.17 8.15 -7.90 -0.06 2.10 16 14 N -0.61 -13.17 3.67 -184.70 -0.68 -13.85 16 15 C -0.31 -8.10 11.08 -15.06 -0.17 -8.26 16 16 H 0.09 2.40 8.06 -52.49 -0.42 1.97 16 17 C -0.02 -0.43 5.50 -17.43 -0.10 -0.52 16 18 N -0.92 -27.24 13.70 55.49 0.76 -26.48 16 19 Si 1.06 24.71 25.17 -169.99 -4.28 20.43 16 20 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 21 H -0.29 -6.24 6.49 56.52 0.37 -5.88 16 22 H -0.29 -6.28 6.18 56.52 0.35 -5.93 16 23 C 0.10 1.93 5.23 -7.77 -0.04 1.89 16 24 N -0.45 -7.05 3.41 -100.94 -0.34 -7.39 16 25 C -0.02 -0.36 12.03 -16.43 -0.20 -0.56 16 26 C -0.03 -0.48 11.86 -17.93 -0.21 -0.69 16 27 N -0.47 -8.25 11.25 -10.48 -0.12 -8.37 16 28 C 0.17 2.71 8.23 -154.56 -1.27 1.44 16 29 H 0.04 0.26 7.87 -51.93 -0.41 -0.14 16 30 H 0.04 0.32 8.08 -51.93 -0.42 -0.10 16 31 H 0.09 0.62 8.14 -51.93 -0.42 0.19 16 32 H 0.07 0.45 7.87 -51.93 -0.41 0.04 16 33 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.07 0.49 7.93 -51.93 -0.41 0.08 16 35 H 0.40 3.86 8.41 -40.82 -0.34 3.52 16 36 H 0.11 1.35 8.14 -51.93 -0.42 0.92 16 37 H 0.12 1.43 7.88 -51.93 -0.41 1.02 16 38 H 0.06 0.84 8.09 -51.93 -0.42 0.42 16 39 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.26 7.67 8.73 -40.82 -0.36 7.31 16 41 H 0.05 1.02 7.61 -51.93 -0.39 0.63 16 42 H 0.07 1.31 4.78 -51.93 -0.25 1.07 16 43 H 0.17 2.03 8.06 -52.49 -0.42 1.61 16 44 H 0.17 2.00 8.06 -52.48 -0.42 1.58 16 LS Contribution 361.17 15.07 5.44 5.44 Total: -1.00 -35.02 361.17 -8.09 -43.11 By element: Atomic # 1 Polarization: 10.42 SS G_CDS: -6.46 Total: 3.96 kcal Atomic # 6 Polarization: 7.64 SS G_CDS: -1.37 Total: 6.27 kcal Atomic # 7 Polarization: -64.25 SS G_CDS: -0.65 Total: -64.90 kcal Atomic # 8 Polarization: -13.54 SS G_CDS: -0.78 Total: -14.32 kcal Atomic # 14 Polarization: 24.71 SS G_CDS: -4.28 Total: 20.43 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -35.02 -8.09 -43.11 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001101611973.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.746 kcal (2) G-P(sol) polarization free energy of solvation -35.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.115 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds