Wall clock time and date at job start Tue Mar 31 2020 12:41:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09001 * 109.47115 * 2 1 4 4 C 1.53004 * 109.46855 * 240.00522 * 2 1 3 5 5 N 1.46490 * 109.47466 * 175.00000 * 4 2 1 6 6 C 1.34951 * 126.04200 * 124.99229 * 5 4 2 7 7 C 1.35319 * 107.74908 * 179.97438 * 6 5 4 8 8 C 1.39870 * 107.91916 * 0.02562 * 7 6 5 9 9 N 1.30837 * 108.20165 * 359.74186 * 8 7 6 10 10 N 1.46501 * 109.47740 * 120.00467 * 2 1 3 11 11 C 1.34769 * 120.00011 * 275.00046 * 10 2 1 12 12 O 1.21358 * 119.99800 * 359.97438 * 11 10 2 13 13 C 1.49453 * 120.00473 * 179.97438 * 11 10 2 14 14 O 1.21351 * 119.99369 * 5.09242 * 13 11 10 15 15 N 1.34769 * 120.00243 * 185.08548 * 13 11 10 16 16 C 1.46497 * 120.00011 * 185.03773 * 15 13 11 17 17 C 1.53005 * 109.47129 * 184.78311 * 16 15 13 18 18 C 1.50703 * 115.54676 * 294.81585 * 17 16 15 19 19 H 1.07998 * 119.99578 * 95.20301 * 18 17 16 20 20 C 1.37876 * 120.00032 * 274.92215 * 18 17 16 21 21 N 1.31513 * 120.00087 * 355.42383 * 20 18 17 22 22 Si 1.86797 * 119.99764 * 175.41970 * 20 18 17 23 23 H 1.48506 * 109.47089 * 90.00605 * 22 20 18 24 24 H 1.48500 * 109.47109 * 210.00447 * 22 20 18 25 25 H 1.48505 * 109.47313 * 330.00182 * 22 20 18 26 26 C 1.52992 * 117.50017 * 80.49188 * 17 16 15 27 27 C 1.52998 * 117.49741 * 149.15238 * 17 16 15 28 28 H 1.08993 * 109.47691 * 59.99448 * 1 2 3 29 29 H 1.09001 * 109.47115 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.46903 * 299.99618 * 1 2 3 31 31 H 1.09012 * 109.46834 * 294.99813 * 4 2 1 32 32 H 1.08998 * 109.47156 * 54.99383 * 4 2 1 33 33 H 1.07995 * 126.12287 * 0.02562 * 6 5 4 34 34 H 1.07995 * 126.04175 * 180.02562 * 7 6 5 35 35 H 1.07998 * 125.89991 * 179.97438 * 8 7 6 36 36 H 0.97004 * 120.00150 * 94.99368 * 10 2 1 37 37 H 0.97000 * 120.00088 * 5.04363 * 15 13 11 38 38 H 1.09004 * 109.47290 * 64.78043 * 16 15 13 39 39 H 1.09002 * 109.47245 * 304.78204 * 16 15 13 40 40 H 0.97005 * 120.00163 * 184.99518 * 21 20 18 41 41 H 1.09001 * 117.49686 * 215.00072 * 26 17 16 42 42 H 1.09004 * 117.49963 * 0.02562 * 26 17 16 43 43 H 1.09001 * 117.50544 * 359.96959 * 27 17 16 44 44 H 1.09001 * 117.50141 * 144.97625 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2494 5 7 3.4999 -0.6179 -1.3112 6 6 4.3653 -1.6486 -1.4096 7 6 5.6169 -1.1350 -1.4392 8 6 5.5128 0.2573 -1.3553 9 7 4.2440 0.5687 -1.2838 10 7 2.0184 -0.6907 1.1961 11 6 2.1472 -0.0185 2.3570 12 8 1.8590 1.1591 2.4115 13 6 2.6450 -0.7231 3.5774 14 8 3.0205 -1.8746 3.5023 15 7 2.6769 -0.0797 4.7611 16 6 3.2665 -0.7313 5.9333 17 6 3.0698 0.1570 7.1635 18 6 3.7929 1.4789 7.1329 19 1 3.2802 2.3671 6.7943 20 6 5.1071 1.5554 7.5426 21 7 5.7023 0.4954 8.0444 22 14 6.0424 3.1647 7.3850 23 1 5.8689 3.9617 8.6260 24 1 7.4850 2.8805 7.1769 25 1 5.5169 3.9313 6.2267 26 6 1.7060 0.1136 7.8554 27 6 2.9224 -0.5364 8.5193 28 1 -0.3634 0.5139 -0.8898 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8901 31 1 1.7515 -1.7715 -1.2057 32 1 1.6052 -0.2616 -2.1370 33 1 4.1055 -2.6958 -1.4573 34 1 6.5341 -1.7002 -1.5142 35 1 6.3371 0.9551 -1.3540 36 1 2.2491 -1.6319 1.1525 37 1 2.3095 0.8148 4.8371 38 1 4.3320 -0.8876 5.7647 39 1 2.7798 -1.6926 6.0978 40 1 6.6022 0.5669 8.3993 41 1 1.3316 1.0412 8.2886 42 1 0.9489 -0.5482 7.4346 43 1 2.9651 -1.6255 8.5350 44 1 3.3487 -0.0367 9.3892 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001116950896.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:41:15 Heat of formation + Delta-G solvation = 32.912846 kcal Electronic energy + Delta-G solvation = -26812.827473 eV Core-core repulsion = 22961.057228 eV Total energy + Delta-G solvation = -3851.770245 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.29887 -40.28787 -38.39780 -36.72421 -36.47127 -33.59374 -32.77579 -31.96751 -30.96854 -30.04088 -27.10423 -26.63626 -25.47704 -23.91967 -21.87713 -21.24804 -21.14605 -20.52953 -20.02207 -19.54126 -18.14432 -17.41221 -16.79480 -16.17773 -15.70143 -15.49649 -15.24914 -14.77188 -14.65769 -14.41361 -14.16799 -13.89368 -13.63748 -13.39899 -13.29733 -12.97495 -12.71699 -12.68088 -12.62269 -12.25859 -11.88664 -11.62615 -11.50180 -11.28789 -10.99018 -10.94042 -10.72836 -10.51982 -10.25552 -9.62972 -9.57999 -9.34557 -9.23931 -9.09160 -8.70853 -8.53446 -8.39567 -8.18680 -6.08394 -4.18048 1.76442 1.77536 2.28898 2.61609 2.77782 3.27735 3.35698 3.40195 3.58245 3.96014 4.03336 4.36790 4.41726 4.63424 4.79828 4.82252 4.91030 5.02051 5.08885 5.19356 5.31066 5.34039 5.44202 5.64166 5.68601 5.88079 5.90504 5.95106 6.20362 6.27671 6.38890 6.46642 6.53268 6.65758 6.74209 6.83416 6.96978 7.07722 7.17024 7.32256 7.49220 7.58109 7.81199 7.83420 8.13177 8.31562 8.50550 8.84092 9.49859 10.98646 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.013318 B = 0.003399 C = 0.003044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2101.864621 B = 8235.683441 C = 9197.135282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.128 3.872 3 H 0.107 0.893 4 C 0.127 3.873 5 N -0.374 5.374 6 C 0.052 3.948 7 C -0.271 4.271 8 C 0.046 3.954 9 N -0.290 5.290 10 N -0.703 5.703 11 C 0.512 3.488 12 O -0.514 6.514 13 C 0.496 3.504 14 O -0.542 6.542 15 N -0.665 5.665 16 C 0.159 3.841 17 C 0.021 3.979 18 C -0.501 4.501 19 H 0.062 0.938 20 C 0.074 3.926 21 N -0.876 5.876 22 Si 0.890 3.110 23 H -0.280 1.280 24 H -0.286 1.286 25 H -0.271 1.271 26 C -0.210 4.210 27 C -0.139 4.139 28 H 0.071 0.929 29 H 0.062 0.938 30 H 0.072 0.928 31 H 0.102 0.898 32 H 0.101 0.899 33 H 0.173 0.827 34 H 0.146 0.854 35 H 0.182 0.818 36 H 0.408 0.592 37 H 0.414 0.586 38 H 0.074 0.926 39 H 0.048 0.952 40 H 0.262 0.738 41 H 0.079 0.921 42 H 0.065 0.935 43 H 0.064 0.936 44 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.145 -5.799 -19.053 21.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.023 3.977 3 H 0.125 0.875 4 C 0.005 3.995 5 N -0.157 5.157 6 C -0.093 4.093 7 C -0.301 4.301 8 C -0.141 4.141 9 N -0.111 5.111 10 N -0.357 5.357 11 C 0.294 3.706 12 O -0.388 6.388 13 C 0.275 3.725 14 O -0.421 6.421 15 N -0.315 5.315 16 C 0.037 3.963 17 C 0.021 3.979 18 C -0.538 4.538 19 H 0.080 0.920 20 C -0.130 4.130 21 N -0.512 5.512 22 Si 0.717 3.283 23 H -0.206 1.206 24 H -0.211 1.211 25 H -0.196 1.196 26 C -0.247 4.247 27 C -0.177 4.177 28 H 0.090 0.910 29 H 0.081 0.919 30 H 0.091 0.909 31 H 0.121 0.879 32 H 0.120 0.880 33 H 0.190 0.810 34 H 0.164 0.836 35 H 0.199 0.801 36 H 0.244 0.756 37 H 0.250 0.750 38 H 0.092 0.908 39 H 0.066 0.934 40 H 0.071 0.929 41 H 0.098 0.902 42 H 0.083 0.917 43 H 0.083 0.917 44 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -7.861 -4.890 -18.923 21.066 hybrid contribution 1.278 0.027 0.005 1.278 sum -6.583 -4.862 -18.917 20.611 Atomic orbital electron populations 1.22152 0.93571 1.02775 1.03671 1.21351 0.94693 0.98959 0.82737 0.87486 1.22073 0.75440 1.02821 0.99153 1.48619 1.06065 1.04233 1.56749 1.22558 0.90362 0.94495 1.01907 1.21524 0.97601 0.94556 1.16409 1.23914 0.94550 0.96034 0.99566 1.77378 1.04427 1.05507 1.23763 1.45706 1.66645 1.14558 1.08800 1.20473 0.78279 0.87045 0.84849 1.90762 1.47762 1.15304 1.84964 1.19913 0.81081 0.86775 0.84746 1.90703 1.49040 1.16705 1.85647 1.45888 1.56999 1.20406 1.08185 1.21217 0.97834 0.93744 0.83512 1.19026 0.93757 0.96259 0.88908 1.20381 0.95716 0.92200 1.45552 0.92021 1.24976 0.97278 0.96243 0.94496 1.69985 1.14124 1.28373 1.38696 0.86623 0.79247 0.83765 0.78668 1.20612 1.21133 1.19608 1.23032 0.91816 1.01761 1.08111 1.22472 0.99848 0.96729 0.98667 0.90980 0.91916 0.90905 0.87948 0.88049 0.81031 0.83592 0.80134 0.75605 0.75012 0.90821 0.93422 0.92853 0.90205 0.91680 0.91749 0.89373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.28 9.48 37.16 0.35 -0.93 16 2 C 0.13 1.28 2.69 -67.93 -0.18 1.10 16 3 H 0.11 1.41 7.49 -51.93 -0.39 1.02 16 4 C 0.13 0.93 6.00 -4.04 -0.02 0.90 16 5 N -0.37 -3.94 3.60 -61.37 -0.22 -4.16 16 6 C 0.05 0.49 11.45 -17.22 -0.20 0.29 16 7 C -0.27 -2.83 10.80 -40.01 -0.43 -3.26 16 8 C 0.05 0.54 12.03 -17.36 -0.21 0.33 16 9 N -0.29 -3.89 12.35 30.62 0.38 -3.52 16 10 N -0.70 -8.83 4.99 -54.23 -0.27 -9.10 16 11 C 0.51 8.60 7.85 -11.59 -0.09 8.51 16 12 O -0.51 -9.72 16.16 5.49 0.09 -9.63 16 13 C 0.50 9.49 7.88 -11.59 -0.09 9.40 16 14 O -0.54 -11.09 16.47 5.50 0.09 -11.00 16 15 N -0.67 -13.60 5.46 -60.73 -0.33 -13.93 16 16 C 0.16 3.58 5.53 -4.04 -0.02 3.56 16 17 C 0.02 0.50 1.47 -155.66 -0.23 0.27 16 18 C -0.50 -13.13 8.59 -34.44 -0.30 -13.43 16 19 H 0.06 1.62 7.82 -52.49 -0.41 1.21 16 20 C 0.07 1.99 5.43 -17.82 -0.10 1.89 16 21 N -0.88 -24.26 12.65 55.43 0.70 -23.56 16 22 Si 0.89 21.05 29.54 -169.99 -5.02 16.03 16 23 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 24 H -0.29 -6.79 7.11 56.52 0.40 -6.38 16 25 H -0.27 -6.45 7.11 56.52 0.40 -6.04 16 26 C -0.21 -4.40 9.96 -26.70 -0.27 -4.66 16 27 C -0.14 -3.16 9.14 -26.70 -0.24 -3.40 16 28 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.10 0.44 8.07 -51.92 -0.42 0.02 16 32 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.17 0.99 8.06 -52.49 -0.42 0.57 16 34 H 0.15 1.23 8.06 -52.49 -0.42 0.81 16 35 H 0.18 1.70 8.06 -52.49 -0.42 1.27 16 36 H 0.41 4.64 8.08 -40.82 -0.33 4.31 16 37 H 0.41 8.42 7.84 -40.82 -0.32 8.10 16 38 H 0.07 1.86 8.14 -51.93 -0.42 1.44 16 39 H 0.05 1.03 8.05 -51.93 -0.42 0.61 16 40 H 0.26 6.97 8.32 -40.82 -0.34 6.63 16 41 H 0.08 1.65 8.14 -51.93 -0.42 1.23 16 42 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 43 H 0.06 1.37 8.14 -51.93 -0.42 0.95 16 44 H 0.09 2.15 8.14 -51.93 -0.42 1.73 16 LS Contribution 383.99 15.07 5.79 5.79 Total: -1.00 -32.59 383.99 -7.33 -39.91 By element: Atomic # 1 Polarization: 19.07 SS G_CDS: -6.50 Total: 12.58 kcal Atomic # 6 Polarization: 2.61 SS G_CDS: -2.03 Total: 0.58 kcal Atomic # 7 Polarization: -54.52 SS G_CDS: 0.26 Total: -54.26 kcal Atomic # 8 Polarization: -20.81 SS G_CDS: 0.18 Total: -20.63 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -32.59 -7.33 -39.91 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116950896.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.824 kcal (2) G-P(sol) polarization free energy of solvation -32.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.912 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds