Wall clock time and date at job start Tue Mar 31 2020 12:41:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 109.47277 * 2 1 4 4 C 1.53003 * 109.46987 * 119.99844 * 2 1 3 5 5 N 1.46496 * 109.47165 * 184.99868 * 4 2 1 6 6 C 1.34951 * 126.03878 * 124.71352 * 5 4 2 7 7 C 1.35316 * 107.74574 * 179.83629 * 6 5 4 8 8 C 1.39863 * 107.92173 * 0.43111 * 7 6 5 9 9 N 1.30841 * 108.20311 * 359.73047 * 8 7 6 10 10 N 1.46500 * 109.47239 * 239.99774 * 2 1 3 11 11 C 1.34774 * 119.99630 * 85.00318 * 10 2 1 12 12 O 1.21349 * 120.00173 * 359.97438 * 11 10 2 13 13 C 1.49453 * 119.99846 * 180.02562 * 11 10 2 14 14 O 1.21353 * 120.00125 * 5.08748 * 13 11 10 15 15 N 1.34774 * 120.00102 * 185.09319 * 13 11 10 16 16 C 1.46494 * 120.00151 * 184.55658 * 15 13 11 17 17 C 1.53003 * 109.47491 * 184.70074 * 16 15 13 18 18 C 1.50708 * 115.54705 * 294.79992 * 17 16 15 19 19 H 1.07999 * 119.99435 * 121.52691 * 18 17 16 20 20 C 1.37869 * 119.99831 * 301.24568 * 18 17 16 21 21 N 1.31521 * 120.00014 * 173.16061 * 20 18 17 22 22 Si 1.86803 * 120.00258 * 353.16421 * 20 18 17 23 23 H 1.48495 * 109.47128 * 94.23742 * 22 20 18 24 24 H 1.48501 * 109.46955 * 214.24149 * 22 20 18 25 25 H 1.48500 * 109.46890 * 334.23636 * 22 20 18 26 26 C 1.53001 * 117.49727 * 80.46616 * 17 16 15 27 27 C 1.52994 * 117.50267 * 149.12521 * 17 16 15 28 28 H 1.08998 * 109.47277 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47097 * 299.99906 * 1 2 3 30 30 H 1.09000 * 109.47203 * 59.99945 * 1 2 3 31 31 H 1.09003 * 109.47392 * 305.00089 * 4 2 1 32 32 H 1.09003 * 109.47174 * 65.00395 * 4 2 1 33 33 H 1.08001 * 126.12533 * 0.02562 * 6 5 4 34 34 H 1.08002 * 126.03603 * 180.16069 * 7 6 5 35 35 H 1.08002 * 125.89830 * 179.75024 * 8 7 6 36 36 H 0.96995 * 120.00213 * 265.00525 * 10 2 1 37 37 H 0.97001 * 120.00152 * 4.55797 * 15 13 11 38 38 H 1.08998 * 109.47592 * 64.70314 * 16 15 13 39 39 H 1.08995 * 109.47447 * 304.69904 * 16 15 13 40 40 H 0.97002 * 120.00052 * 180.02562 * 21 20 18 41 41 H 1.09004 * 117.49881 * 215.00573 * 26 17 16 42 42 H 1.08997 * 117.49907 * 0.02562 * 26 17 16 43 43 H 1.09000 * 117.50159 * 359.97438 * 27 17 16 44 44 H 1.08998 * 117.50086 * 144.97404 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 3.5000 -0.6179 1.3110 6 6 4.2183 -0.1272 2.3427 7 6 5.5273 -0.2092 2.0098 8 6 5.6114 -0.7599 0.7269 9 7 4.3968 -1.0053 0.3070 10 7 2.0184 -0.6907 -1.1961 11 6 2.1471 -0.0183 -2.3571 12 8 1.8581 1.1590 -2.4117 13 6 2.6448 -0.7229 -3.5775 14 8 2.8450 -1.9195 -3.5480 15 7 2.8713 -0.0295 -4.7107 16 6 3.2629 -0.7335 -5.9343 17 6 3.5701 0.2859 -7.0332 18 6 2.3991 1.1122 -7.4990 19 1 2.4360 2.1893 -7.4282 20 6 1.2830 0.4935 -8.0209 21 7 0.2102 1.2005 -8.3022 22 14 1.2944 -1.3490 -8.3285 23 1 0.7175 -2.0505 -7.1537 24 1 0.4839 -1.6545 -9.5347 25 1 2.6910 -1.8066 -8.5417 26 6 4.9442 0.9585 -7.0086 27 6 4.6255 -0.0935 -8.0738 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.6053 -0.2617 2.1371 32 1 1.7517 -1.7715 1.2056 33 1 3.8199 0.2586 3.2695 34 1 6.3598 0.1004 2.6243 35 1 6.5218 -0.9500 0.1778 36 1 2.2490 -1.6318 -1.1526 37 1 2.7750 0.9357 -4.7162 38 1 2.4481 -1.3814 -6.2574 39 1 4.1502 -1.3355 -5.7390 40 1 -0.5751 0.7651 -8.6691 41 1 5.0011 1.9987 -7.3294 42 1 5.6293 0.6745 -6.2099 43 1 5.1014 -1.0692 -7.9755 44 1 4.4727 0.2541 -9.0955 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001116950897.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:41:18 Heat of formation + Delta-G solvation = 39.622309 kcal Electronic energy + Delta-G solvation = -27056.037927 eV Core-core repulsion = 23204.558626 eV Total energy + Delta-G solvation = -3851.479301 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.35421 -40.24453 -38.44268 -36.98151 -36.42971 -33.62672 -32.79702 -32.19220 -30.84524 -30.15274 -27.40916 -26.65822 -25.54597 -23.91021 -21.83073 -21.49883 -21.25263 -20.78722 -19.92476 -19.38007 -18.11518 -17.47478 -16.90041 -16.37310 -15.88529 -15.53192 -15.00614 -14.94108 -14.82535 -14.46487 -14.12371 -13.87835 -13.68161 -13.46872 -13.11899 -13.02874 -12.94980 -12.76455 -12.56444 -12.29290 -12.22611 -12.12362 -11.52369 -11.25243 -11.04724 -10.79227 -10.69726 -10.57353 -10.27580 -9.64552 -9.61950 -9.25655 -9.19391 -9.15600 -8.86102 -8.79258 -8.48633 -8.39623 -6.17090 -4.18667 1.70164 1.83665 2.24957 2.66695 2.70820 3.26644 3.37171 3.42212 3.63534 3.90216 4.09871 4.37375 4.41174 4.55003 4.67949 4.76996 4.89237 4.93888 5.06266 5.12468 5.21637 5.33055 5.39351 5.56113 5.63797 5.64279 5.81771 5.92203 5.93626 6.11737 6.15687 6.30626 6.40214 6.47233 6.47645 6.68052 6.76928 6.84961 6.94017 7.10492 7.28090 7.54103 7.66171 7.86642 8.16602 8.42032 8.51491 8.86029 9.45797 10.94035 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.017431 B = 0.003387 C = 0.003087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1605.965526 B = 8264.242512 C = 9068.943097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.132 3.868 3 H 0.096 0.904 4 C 0.125 3.875 5 N -0.376 5.376 6 C 0.049 3.951 7 C -0.274 4.274 8 C 0.043 3.957 9 N -0.279 5.279 10 N -0.689 5.689 11 C 0.515 3.485 12 O -0.519 6.519 13 C 0.499 3.501 14 O -0.538 6.538 15 N -0.666 5.666 16 C 0.150 3.850 17 C -0.018 4.018 18 C -0.490 4.490 19 H 0.080 0.920 20 C 0.083 3.917 21 N -0.889 5.889 22 Si 0.867 3.133 23 H -0.278 1.278 24 H -0.291 1.291 25 H -0.251 1.251 26 C -0.180 4.180 27 C -0.186 4.186 28 H 0.063 0.937 29 H 0.070 0.930 30 H 0.074 0.926 31 H 0.113 0.887 32 H 0.093 0.907 33 H 0.172 0.828 34 H 0.145 0.855 35 H 0.181 0.819 36 H 0.414 0.586 37 H 0.419 0.581 38 H 0.061 0.939 39 H 0.057 0.943 40 H 0.266 0.734 41 H 0.087 0.913 42 H 0.074 0.926 43 H 0.071 0.929 44 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.248 -4.074 22.657 23.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.026 3.974 3 H 0.114 0.886 4 C 0.003 3.997 5 N -0.159 5.159 6 C -0.096 4.096 7 C -0.303 4.303 8 C -0.144 4.144 9 N -0.100 5.100 10 N -0.344 5.344 11 C 0.296 3.704 12 O -0.394 6.394 13 C 0.279 3.721 14 O -0.417 6.417 15 N -0.317 5.317 16 C 0.027 3.973 17 C -0.019 4.019 18 C -0.527 4.527 19 H 0.098 0.902 20 C -0.121 4.121 21 N -0.525 5.525 22 Si 0.695 3.305 23 H -0.205 1.205 24 H -0.218 1.218 25 H -0.175 1.175 26 C -0.217 4.217 27 C -0.224 4.224 28 H 0.083 0.917 29 H 0.089 0.911 30 H 0.093 0.907 31 H 0.131 0.869 32 H 0.111 0.889 33 H 0.189 0.811 34 H 0.163 0.837 35 H 0.198 0.802 36 H 0.251 0.749 37 H 0.256 0.744 38 H 0.078 0.922 39 H 0.076 0.924 40 H 0.076 0.924 41 H 0.105 0.895 42 H 0.092 0.908 43 H 0.089 0.911 44 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 4.097 -4.522 21.572 22.418 hybrid contribution 0.407 -0.621 0.512 0.902 sum 4.504 -5.143 22.084 23.118 Atomic orbital electron populations 1.22177 0.93480 1.03026 1.03712 1.21255 0.94798 0.98012 0.83325 0.88581 1.22129 0.74960 1.03001 0.99604 1.48725 1.06222 1.48445 1.12463 1.22554 0.92528 1.00322 0.94233 1.21514 0.96297 1.13563 0.98953 1.23955 0.96121 0.98967 0.95335 1.77502 0.99302 1.21967 1.11196 1.45586 1.65776 1.14945 1.08070 1.20284 0.78544 0.86859 0.84672 1.90761 1.48527 1.15361 1.84781 1.19947 0.80122 0.87344 0.84681 1.90705 1.51999 1.14478 1.84517 1.45711 1.64890 1.12637 1.08465 1.21265 0.98730 0.94252 0.83019 1.19577 0.90445 0.97204 0.94713 1.20270 0.96977 0.94018 1.41443 0.90208 1.24926 0.94868 0.97994 0.94307 1.69900 1.03190 1.36390 1.43018 0.87044 0.79474 0.86306 0.77647 1.20470 1.21781 1.17464 1.22795 0.99769 0.97796 1.01320 1.23067 1.05598 0.97716 0.96060 0.91744 0.91089 0.90687 0.86886 0.88916 0.81099 0.83680 0.80167 0.74892 0.74381 0.92152 0.92443 0.92430 0.89491 0.90798 0.91077 0.89159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.41 9.48 37.16 0.35 -1.06 16 2 C 0.13 1.33 2.79 -67.93 -0.19 1.14 16 3 H 0.10 1.16 7.58 -51.93 -0.39 0.76 16 4 C 0.13 0.88 6.04 -4.04 -0.02 0.85 16 5 N -0.38 -3.68 3.68 -61.36 -0.23 -3.91 16 6 C 0.05 0.40 11.45 -17.22 -0.20 0.20 16 7 C -0.27 -2.45 10.80 -40.02 -0.43 -2.88 16 8 C 0.04 0.47 12.03 -17.37 -0.21 0.26 16 9 N -0.28 -3.58 11.33 30.62 0.35 -3.23 16 10 N -0.69 -9.37 4.03 -54.23 -0.22 -9.59 16 11 C 0.52 9.08 7.85 -11.59 -0.09 8.99 16 12 O -0.52 -10.18 16.16 5.50 0.09 -10.09 16 13 C 0.50 9.97 7.88 -11.58 -0.09 9.88 16 14 O -0.54 -11.42 16.47 5.49 0.09 -11.33 16 15 N -0.67 -14.01 5.46 -60.73 -0.33 -14.35 16 16 C 0.15 3.31 5.08 -4.04 -0.02 3.29 16 17 C -0.02 -0.41 0.85 -155.66 -0.13 -0.54 16 18 C -0.49 -13.21 9.19 -34.44 -0.32 -13.52 16 19 H 0.08 2.34 8.06 -52.49 -0.42 1.92 16 20 C 0.08 2.33 5.46 -17.82 -0.10 2.23 16 21 N -0.89 -26.61 13.96 55.43 0.77 -25.84 16 22 Si 0.87 21.50 24.70 -169.99 -4.20 17.30 16 23 H -0.28 -7.00 6.96 56.52 0.39 -6.60 16 24 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 25 H -0.25 -5.83 6.11 56.52 0.35 -5.49 16 26 C -0.18 -3.54 9.96 -26.70 -0.27 -3.81 16 27 C -0.19 -3.82 8.69 -26.70 -0.23 -4.05 16 28 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 31 H 0.11 0.38 8.07 -51.93 -0.42 -0.04 16 32 H 0.09 0.57 8.14 -51.93 -0.42 0.14 16 33 H 0.17 0.71 8.06 -52.49 -0.42 0.29 16 34 H 0.15 0.98 8.06 -52.49 -0.42 0.55 16 35 H 0.18 1.59 8.06 -52.49 -0.42 1.17 16 36 H 0.41 5.55 7.93 -40.82 -0.32 5.22 16 37 H 0.42 8.90 7.83 -40.82 -0.32 8.58 16 38 H 0.06 1.45 4.27 -51.93 -0.22 1.22 16 39 H 0.06 1.19 8.06 -51.93 -0.42 0.77 16 40 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 41 H 0.09 1.70 8.14 -51.93 -0.42 1.28 16 42 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 43 H 0.07 1.34 8.14 -51.93 -0.42 0.91 16 44 H 0.09 1.88 8.14 -51.93 -0.42 1.46 16 LS Contribution 372.93 15.07 5.62 5.62 Total: -1.00 -34.17 372.93 -6.37 -40.54 By element: Atomic # 1 Polarization: 20.27 SS G_CDS: -6.37 Total: 13.90 kcal Atomic # 6 Polarization: 2.92 SS G_CDS: -1.95 Total: 0.98 kcal Atomic # 7 Polarization: -57.26 SS G_CDS: 0.34 Total: -56.91 kcal Atomic # 8 Polarization: -21.60 SS G_CDS: 0.18 Total: -21.42 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -4.20 Total: 17.30 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -34.17 -6.37 -40.54 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116950897.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.161 kcal (2) G-P(sol) polarization free energy of solvation -34.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.539 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds