Wall clock time and date at job start Tue Mar 31 2020 12:37:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.46721 * 2 1 4 4 C 1.50694 * 109.47355 * 239.99710 * 2 1 3 5 5 H 1.08000 * 120.00563 * 239.99848 * 4 2 1 6 6 C 1.37885 * 119.99902 * 60.00012 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46985 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47276 * 299.99832 * 8 6 4 11 11 H 1.48498 * 109.47150 * 60.00043 * 8 6 4 12 12 N 1.46497 * 109.47021 * 119.99638 * 2 1 3 13 13 C 1.34779 * 119.99943 * 275.00054 * 12 2 1 14 14 O 1.21365 * 120.00483 * 0.02562 * 13 12 2 15 15 C 1.49328 * 119.99930 * 180.02562 * 13 12 2 16 16 O 1.21401 * 119.99942 * 0.02562 * 15 13 12 17 17 N 1.34779 * 119.99930 * 180.02562 * 15 13 12 18 18 C 1.40492 * 119.99641 * 180.02562 * 17 15 13 19 19 C 1.40331 * 126.11582 * 359.69203 * 18 17 15 20 20 N 1.30824 * 108.20982 * 179.87751 * 19 18 17 21 21 N 1.40054 * 108.36490 * 0.37979 * 20 19 18 22 22 C 1.46501 * 125.99616 * 179.73316 * 21 20 19 23 23 C 1.54272 * 110.03028 * 212.19210 * 22 21 20 24 24 C 1.54887 * 104.19346 * 217.10118 * 23 22 21 25 25 C 1.54896 * 102.74601 * 37.94737 * 24 23 22 26 26 C 1.53868 * 110.03336 * 95.02747 * 22 21 20 27 27 C 1.35227 * 108.00887 * 359.75610 * 21 20 19 28 28 H 1.08998 * 109.47089 * 300.00187 * 1 2 3 29 29 H 1.08995 * 109.47131 * 60.00355 * 1 2 3 30 30 H 1.09002 * 109.47106 * 180.02562 * 1 2 3 31 31 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 32 32 H 0.96997 * 120.00208 * 95.00345 * 12 2 1 33 33 H 0.96993 * 120.00399 * 0.02562 * 17 15 13 34 34 H 1.08003 * 125.89952 * 0.02562 * 19 18 17 35 35 H 1.08994 * 110.01773 * 333.63277 * 22 21 20 36 36 H 1.08992 * 110.49172 * 335.78742 * 23 22 21 37 37 H 1.09003 * 110.48108 * 98.42644 * 23 22 21 38 38 H 1.08998 * 110.76167 * 279.62902 * 24 23 22 39 39 H 1.09002 * 110.91416 * 156.32947 * 24 23 22 40 40 H 1.09004 * 110.48125 * 203.37191 * 25 24 23 41 41 H 1.09001 * 110.59862 * 80.78805 * 25 24 23 42 42 H 1.08996 * 110.03588 * 238.56980 * 26 22 21 43 43 H 1.09009 * 110.03046 * 359.97438 * 26 22 21 44 44 H 1.08002 * 126.17979 * 180.02562 * 27 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9427 0.8296 -2.6034 8 14 2.3226 -1.1197 -4.0078 9 1 1.8270 -0.4201 -5.2204 10 1 3.8076 -1.1190 -4.0076 11 1 1.8282 -2.5199 -4.0080 12 7 2.0183 -0.6905 1.1962 13 6 2.1470 -0.0181 2.3571 14 8 1.8579 1.1594 2.4118 15 6 2.6453 -0.7218 3.5763 16 8 2.9349 -1.8995 3.5216 17 7 2.7735 -0.0495 4.7374 18 6 3.2428 -0.7115 5.8842 19 6 3.6075 -2.0640 5.9675 20 7 3.9944 -2.3084 7.1931 21 7 3.8824 -1.1260 7.9352 22 6 4.2093 -0.9658 9.3543 23 6 3.2819 0.0877 9.9946 24 6 4.1945 0.8389 10.9955 25 6 5.5422 0.9182 10.2361 26 6 5.6463 -0.4378 9.5079 27 6 3.4191 -0.1581 7.1123 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 0.7088 1.1611 -3.4845 32 1 2.2490 -1.6316 1.1527 33 1 2.5417 0.8913 4.7812 34 1 3.5765 -2.7793 5.1588 35 1 4.1048 -1.9197 9.8712 36 1 2.9019 0.7726 9.2366 37 1 2.4585 -0.3973 10.5189 38 1 4.3044 0.2710 11.9193 39 1 3.8077 1.8370 11.2011 40 1 6.3683 1.0394 10.9368 41 1 5.5296 1.7374 9.5171 42 1 6.2391 -1.1350 10.1000 43 1 6.1007 -0.3010 8.5265 44 1 3.2249 0.8694 7.3824 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001120951644.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:37:58 Heat of formation + Delta-G solvation = 4.602247 kcal Electronic energy + Delta-G solvation = -26112.528889 eV Core-core repulsion = 22259.531005 eV Total energy + Delta-G solvation = -3852.997885 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.65103 -40.07056 -38.47911 -37.84340 -35.32348 -34.48704 -32.39490 -32.14579 -29.80050 -29.24514 -29.09167 -27.53081 -25.33087 -24.57690 -22.50168 -21.88053 -21.17432 -20.33641 -20.16294 -19.39021 -18.25956 -17.79176 -16.44583 -16.27225 -16.21960 -15.60500 -15.41242 -15.12598 -14.68300 -14.66945 -14.19626 -14.14788 -13.94035 -13.47470 -13.18561 -12.97116 -12.46943 -12.44917 -12.16114 -11.78538 -11.70389 -11.67673 -11.35634 -11.20615 -11.13591 -11.05699 -10.98940 -10.87200 -10.80806 -10.77314 -10.35864 -10.26180 -9.50305 -9.14436 -9.03825 -8.61021 -8.12090 -7.80627 -6.16305 -4.25772 1.47435 1.95995 2.15207 2.84441 2.84621 3.26610 3.31140 3.33782 3.78901 3.86029 4.00137 4.16410 4.32407 4.36841 4.55420 4.72857 4.76223 4.85593 4.89483 4.99290 5.07041 5.14850 5.17499 5.26290 5.35883 5.45744 5.46516 5.53584 5.62866 5.69262 5.75744 6.07969 6.73217 6.74089 6.85090 6.86411 7.03417 7.15829 7.24744 7.42274 7.59175 7.64264 7.80339 8.01263 8.06450 8.46654 8.63207 8.86891 9.41111 10.89664 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.033223 B = 0.002151 C = 0.002100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 842.594469 B =13016.799795 C =13331.532878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.262 3.738 3 H 0.054 0.946 4 C -0.536 4.536 5 H 0.064 0.936 6 C 0.067 3.933 7 N -0.884 5.884 8 Si 0.905 3.095 9 H -0.286 1.286 10 H -0.275 1.275 11 H -0.275 1.275 12 N -0.668 5.668 13 C 0.497 3.503 14 O -0.538 6.538 15 C 0.509 3.491 16 O -0.515 6.515 17 N -0.620 5.620 18 C 0.002 3.998 19 C 0.053 3.947 20 N -0.288 5.288 21 N -0.362 5.362 22 C 0.163 3.837 23 C -0.137 4.137 24 C -0.122 4.122 25 C -0.125 4.125 26 C -0.138 4.138 27 C 0.021 3.979 28 H 0.016 0.984 29 H 0.094 0.906 30 H 0.030 0.970 31 H 0.266 0.734 32 H 0.403 0.597 33 H 0.421 0.579 34 H 0.207 0.793 35 H 0.105 0.895 36 H 0.081 0.919 37 H 0.080 0.920 38 H 0.073 0.927 39 H 0.075 0.925 40 H 0.071 0.929 41 H 0.069 0.931 42 H 0.078 0.922 43 H 0.076 0.924 44 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.857 0.210 26.160 26.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.161 3.839 3 H 0.072 0.928 4 C -0.575 4.575 5 H 0.082 0.918 6 C -0.136 4.136 7 N -0.521 5.521 8 Si 0.732 3.268 9 H -0.211 1.211 10 H -0.201 1.201 11 H -0.200 1.200 12 N -0.317 5.317 13 C 0.276 3.724 14 O -0.417 6.417 15 C 0.291 3.709 16 O -0.389 6.389 17 N -0.267 5.267 18 C -0.103 4.103 19 C -0.134 4.134 20 N -0.109 5.109 21 N -0.147 5.147 22 C 0.061 3.939 23 C -0.176 4.176 24 C -0.160 4.160 25 C -0.163 4.163 26 C -0.177 4.177 27 C -0.127 4.127 28 H 0.035 0.965 29 H 0.113 0.887 30 H 0.049 0.951 31 H 0.076 0.924 32 H 0.237 0.763 33 H 0.258 0.742 34 H 0.224 0.776 35 H 0.123 0.877 36 H 0.100 0.900 37 H 0.098 0.902 38 H 0.091 0.909 39 H 0.094 0.906 40 H 0.090 0.910 41 H 0.088 0.912 42 H 0.097 0.903 43 H 0.094 0.906 44 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges 6.211 -0.539 26.834 27.548 hybrid contribution -0.033 0.249 -1.425 1.447 sum 6.178 -0.289 25.408 26.150 Atomic orbital electron populations 1.22100 0.97845 0.99571 1.01194 1.18967 0.91437 0.94125 0.79360 0.92815 1.21160 1.32798 1.13486 0.90030 0.91767 1.24882 0.94705 0.94949 0.99095 1.69884 1.35661 1.22377 1.24155 0.86446 0.79221 0.79616 0.81485 1.21122 1.20089 1.20045 1.46485 1.61314 1.14559 1.09300 1.19627 0.81063 0.87219 0.84507 1.90724 1.50921 1.15287 1.84737 1.20793 0.78566 0.86983 0.84525 1.90605 1.48034 1.15661 1.84641 1.42493 1.63148 1.14377 1.06641 1.17767 1.11531 0.93566 0.87396 1.24567 0.98284 0.95344 0.95156 1.77398 1.23858 1.05278 1.04410 1.48392 1.50988 1.06557 1.08745 1.21965 0.95159 1.00934 0.75845 1.22840 0.98066 0.97412 0.99235 1.22476 0.94889 1.00748 0.97891 1.22385 0.97752 0.96973 0.99196 1.22638 0.95359 0.97553 1.02111 1.21635 1.05095 0.96264 0.89730 0.96466 0.88740 0.95089 0.92415 0.76276 0.74179 0.77628 0.87716 0.90030 0.90161 0.90865 0.90639 0.91014 0.91178 0.90310 0.90572 0.80738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.61 9.26 37.16 0.34 -3.27 16 2 C 0.26 6.56 2.56 -69.09 -0.18 6.38 16 3 H 0.05 1.51 7.58 -51.92 -0.39 1.12 16 4 C -0.54 -14.12 8.73 -34.44 -0.30 -14.43 16 5 H 0.06 1.63 7.74 -52.49 -0.41 1.23 16 6 C 0.07 1.79 5.30 -17.82 -0.09 1.69 16 7 N -0.88 -24.39 11.32 55.43 0.63 -23.77 16 8 Si 0.91 20.57 29.54 -169.99 -5.02 15.55 16 9 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 10 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 11 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 12 N -0.67 -14.26 5.06 -55.40 -0.28 -14.54 16 13 C 0.50 9.91 7.85 -11.64 -0.09 9.82 16 14 O -0.54 -11.74 16.14 5.48 0.09 -11.65 16 15 C 0.51 8.67 7.86 -11.64 -0.09 8.57 16 16 O -0.51 -9.26 13.63 5.45 0.07 -9.18 16 17 N -0.62 -8.67 5.46 -10.48 -0.06 -8.73 16 18 C 0.00 0.03 6.90 -83.96 -0.58 -0.55 16 19 C 0.05 0.78 10.84 -17.19 -0.19 0.60 16 20 N -0.29 -3.99 12.56 30.72 0.39 -3.61 16 21 N -0.36 -3.91 3.45 -53.57 -0.18 -4.09 16 22 C 0.16 1.20 4.01 -66.81 -0.27 0.94 16 23 C -0.14 -0.73 6.37 -25.07 -0.16 -0.89 16 24 C -0.12 -0.49 6.91 -24.74 -0.17 -0.66 16 25 C -0.13 -0.59 6.83 -25.07 -0.17 -0.76 16 26 C -0.14 -0.89 6.59 -25.62 -0.17 -1.06 16 27 C 0.02 0.22 10.46 -16.91 -0.18 0.04 16 28 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.09 2.48 6.07 -51.93 -0.32 2.16 16 30 H 0.03 0.71 8.14 -51.93 -0.42 0.28 16 31 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 32 H 0.40 8.01 8.01 -40.82 -0.33 7.69 16 33 H 0.42 5.13 8.29 -40.82 -0.34 4.79 16 34 H 0.21 3.17 5.92 -52.48 -0.31 2.86 16 35 H 0.10 0.76 8.14 -51.93 -0.42 0.33 16 36 H 0.08 0.44 5.94 -51.93 -0.31 0.13 16 37 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 38 H 0.07 0.25 8.14 -51.93 -0.42 -0.18 16 39 H 0.07 0.26 8.14 -51.93 -0.42 -0.17 16 40 H 0.07 0.29 8.14 -51.93 -0.42 -0.14 16 41 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 42 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 43 H 0.08 0.64 7.92 -51.92 -0.41 0.22 16 44 H 0.18 1.23 6.89 -52.49 -0.36 0.87 16 LS Contribution 364.88 15.07 5.50 5.50 Total: -1.00 -30.74 364.88 -7.27 -38.01 By element: Atomic # 1 Polarization: 16.20 SS G_CDS: -6.11 Total: 10.09 kcal Atomic # 6 Polarization: 8.72 SS G_CDS: -2.29 Total: 6.43 kcal Atomic # 7 Polarization: -55.23 SS G_CDS: 0.49 Total: -54.74 kcal Atomic # 8 Polarization: -21.00 SS G_CDS: 0.16 Total: -20.84 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.02 Total: 15.55 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -30.74 -7.27 -38.01 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001120951644.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.611 kcal (2) G-P(sol) polarization free energy of solvation -30.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.008 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds