Wall clock time and date at job start Tue Mar 31 2020 14:01:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.21278 * 119.99547 * 2 1 4 4 N 1.34774 * 120.00265 * 180.02562 * 2 1 3 5 5 C 1.46932 * 120.63018 * 354.39546 * 4 2 1 6 6 C 1.53196 * 108.77450 * 233.59057 * 5 4 2 7 7 C 1.53035 * 109.31162 * 305.36481 * 6 5 4 8 8 N 1.46500 * 109.46200 * 181.38490 * 7 6 5 9 9 N 1.40067 * 126.04874 * 300.29251 * 8 7 6 10 10 C 1.30847 * 108.37289 * 180.16412 * 9 8 7 11 11 C 1.39757 * 108.32622 * 359.59086 * 10 9 8 12 12 C 1.35264 * 126.04476 * 119.99709 * 8 7 6 13 13 N 1.39472 * 126.22018 * 359.97438 * 12 8 7 14 14 C 1.34769 * 120.00183 * 179.97438 * 13 12 8 15 15 O 1.21290 * 119.99975 * 0.02562 * 14 13 12 16 16 C 1.50700 * 119.99951 * 180.02562 * 14 13 12 17 17 C 1.50702 * 109.47392 * 180.02562 * 16 14 13 18 18 H 1.08004 * 119.99665 * 359.97438 * 17 16 14 19 19 C 1.37876 * 120.00459 * 180.02562 * 17 16 14 20 20 N 1.31511 * 119.99761 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 120.00141 * 179.97438 * 19 17 16 22 22 H 1.48505 * 109.47181 * 59.99857 * 21 19 17 23 23 H 1.48497 * 109.46907 * 179.97438 * 21 19 17 24 24 H 1.48505 * 109.46945 * 299.99886 * 21 19 17 25 25 C 1.53047 * 109.53955 * 61.36632 * 7 6 5 26 26 C 1.46924 * 120.63381 * 174.37904 * 4 2 1 27 27 H 1.09005 * 109.47071 * 184.87771 * 1 2 3 28 28 H 1.09001 * 109.47214 * 304.87391 * 1 2 3 29 29 H 1.09001 * 109.47222 * 64.88218 * 1 2 3 30 30 H 1.08991 * 109.58460 * 113.80129 * 5 4 2 31 31 H 1.08993 * 109.70215 * 353.44742 * 5 4 2 32 32 H 1.08995 * 109.49379 * 185.41364 * 6 5 4 33 33 H 1.08994 * 109.49553 * 65.31552 * 6 5 4 34 34 H 1.09004 * 109.46292 * 301.36178 * 7 6 5 35 35 H 1.08000 * 125.83285 * 179.84466 * 10 9 8 36 36 H 1.07995 * 126.08674 * 180.29747 * 11 10 9 37 37 H 0.97001 * 119.99891 * 0.02562 * 13 12 8 38 38 H 1.09002 * 109.47481 * 299.99979 * 16 14 13 39 39 H 1.08996 * 109.47255 * 60.00224 * 16 14 13 40 40 H 0.97000 * 120.00241 * 180.02562 * 20 19 17 41 41 H 1.08994 * 109.49470 * 58.58519 * 25 7 6 42 42 H 1.09001 * 109.49519 * 178.68276 * 25 7 6 43 43 H 1.08999 * 109.58666 * 246.20202 * 26 4 2 44 44 H 1.09008 * 109.58264 * 6.61594 * 26 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0503 0.0000 4 7 2.1809 -1.1671 -0.0005 5 6 1.4656 -2.4447 0.1224 6 6 2.0728 -3.2401 1.2824 7 6 3.5807 -3.3826 1.0638 8 7 4.1597 -4.1711 2.1543 9 7 4.1198 -3.8478 3.5165 10 6 4.7438 -4.7861 4.1816 11 6 5.1951 -5.7447 3.2702 12 6 4.8224 -5.3431 2.0243 13 7 5.0771 -6.0178 0.8305 14 6 5.7533 -7.1834 0.8462 15 8 6.1401 -7.6460 1.8986 16 6 6.0289 -7.9121 -0.4438 17 6 6.7935 -9.1777 -0.1524 18 1 7.0541 -9.4290 0.8651 19 6 7.1611 -10.0143 -1.1849 20 7 6.8442 -9.7080 -2.4240 21 14 8.1094 -11.5826 -0.8237 22 1 7.3059 -12.4516 0.0733 23 1 8.3809 -12.3007 -2.0949 24 1 9.3949 -11.2426 -0.1624 25 6 4.2275 -1.9958 1.0383 26 6 3.6448 -1.1863 -0.1244 27 1 -0.3633 -1.0240 0.0874 28 1 -0.3634 0.5876 0.8431 29 1 -0.3634 0.4362 -0.9305 30 1 1.5686 -3.0115 -0.8028 31 1 0.4104 -2.2574 0.3206 32 1 1.6161 -4.2289 1.3237 33 1 1.8890 -2.7145 2.2193 34 1 3.7641 -3.8860 0.1145 35 1 4.8824 -4.8168 5.2522 36 1 5.7417 -6.6443 3.5116 37 1 4.7681 -5.6477 -0.0112 38 1 5.0853 -8.1617 -0.9289 39 1 6.6186 -7.2746 -1.1024 40 1 7.1025 -10.2967 -3.1503 41 1 4.0235 -1.4820 1.9776 42 1 5.3045 -2.0991 0.9060 43 1 3.9255 -1.6505 -1.0698 44 1 4.0280 -0.1664 -0.0878 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001143193934.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:01:29 Heat of formation + Delta-G solvation = 14.803509 kcal Electronic energy + Delta-G solvation = -26824.810025 eV Core-core repulsion = 22972.254500 eV Total energy + Delta-G solvation = -3852.555525 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.40472 -40.38924 -38.82010 -37.71459 -34.53696 -34.02826 -33.10478 -32.11229 -30.59572 -29.79631 -29.31385 -28.03382 -25.32863 -24.00347 -23.72724 -22.31276 -21.39997 -20.34592 -19.41203 -19.10767 -18.22303 -17.36958 -16.52123 -16.30861 -15.87379 -15.60921 -15.42403 -15.02734 -14.70016 -14.53479 -14.47384 -14.01043 -13.96061 -13.70163 -13.52984 -13.11154 -13.07030 -12.65771 -12.55198 -12.36430 -12.25381 -12.11808 -11.67302 -11.55965 -11.26813 -11.18400 -10.93959 -10.80426 -10.48429 -10.41240 -10.14351 -10.04329 -9.45553 -9.12832 -8.93150 -8.79442 -8.55647 -7.74750 -6.19064 -4.19973 2.01794 2.20591 2.34853 2.57380 3.07613 3.30701 3.33341 3.36179 3.46526 3.57877 4.04871 4.14845 4.27025 4.38168 4.47491 4.59573 4.66813 4.77829 4.87765 4.96663 5.00801 5.09883 5.18388 5.19913 5.33570 5.39654 5.42298 5.45414 5.57607 5.71123 5.83009 5.88445 6.06855 6.09928 6.32432 6.43746 6.91875 6.96840 7.02888 7.08653 7.29354 7.60983 7.78774 7.83788 7.97234 8.16480 8.81768 8.90527 9.45952 10.93049 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.018692 B = 0.002727 C = 0.002486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1497.598026 B =10264.560990 C =11260.441498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.515 3.485 3 O -0.548 6.548 4 N -0.615 5.615 5 C 0.104 3.896 6 C -0.142 4.142 7 C 0.169 3.831 8 N -0.391 5.391 9 N -0.304 5.304 10 C 0.059 3.941 11 C -0.292 4.292 12 C 0.320 3.680 13 N -0.666 5.666 14 C 0.520 3.480 15 O -0.505 6.505 16 C 0.013 3.987 17 C -0.514 4.514 18 H 0.077 0.923 19 C 0.058 3.942 20 N -0.899 5.899 21 Si 0.905 3.095 22 H -0.275 1.275 23 H -0.287 1.287 24 H -0.275 1.275 25 C -0.139 4.139 26 C 0.113 3.887 27 H 0.083 0.917 28 H 0.094 0.906 29 H 0.096 0.904 30 H 0.077 0.923 31 H 0.100 0.900 32 H 0.084 0.916 33 H 0.085 0.915 34 H 0.094 0.906 35 H 0.181 0.819 36 H 0.172 0.828 37 H 0.404 0.596 38 H 0.053 0.947 39 H 0.053 0.947 40 H 0.264 0.736 41 H 0.084 0.916 42 H 0.082 0.918 43 H 0.073 0.927 44 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.323 16.129 3.132 21.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.304 3.696 3 O -0.425 6.425 4 N -0.349 5.349 5 C -0.019 4.019 6 C -0.181 4.181 7 C 0.066 3.934 8 N -0.180 5.180 9 N -0.126 5.126 10 C -0.127 4.127 11 C -0.323 4.323 12 C 0.101 3.899 13 N -0.315 5.315 14 C 0.310 3.690 15 O -0.376 6.376 16 C -0.026 4.026 17 C -0.552 4.552 18 H 0.095 0.905 19 C -0.144 4.144 20 N -0.539 5.539 21 Si 0.732 3.268 22 H -0.200 1.200 23 H -0.213 1.213 24 H -0.200 1.200 25 C -0.178 4.178 26 C -0.010 4.010 27 H 0.102 0.898 28 H 0.113 0.887 29 H 0.114 0.886 30 H 0.095 0.905 31 H 0.118 0.882 32 H 0.102 0.898 33 H 0.104 0.896 34 H 0.112 0.888 35 H 0.198 0.802 36 H 0.189 0.811 37 H 0.239 0.761 38 H 0.071 0.929 39 H 0.071 0.929 40 H 0.074 0.926 41 H 0.102 0.898 42 H 0.101 0.899 43 H 0.092 0.908 44 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -13.334 17.356 3.635 22.186 hybrid contribution 0.744 -1.511 -0.465 1.747 sum -12.590 15.846 3.170 20.485 Atomic orbital electron populations 1.22048 0.91760 1.04691 1.05434 1.20818 0.90684 0.82953 0.75112 1.90720 1.70665 1.31059 1.50061 1.48224 1.07424 1.06307 1.72983 1.21918 0.97317 0.83973 0.98685 1.22275 0.93979 1.01748 1.00064 1.21101 0.93313 0.91893 0.87101 1.48653 1.46460 1.16861 1.06017 1.77301 1.26145 1.23961 0.85192 1.23724 0.96526 0.92304 1.00144 1.21719 1.15295 1.06154 0.89172 1.18359 0.95765 0.86449 0.89354 1.43793 1.57765 1.23993 1.05914 1.22403 0.74436 0.77637 0.94475 1.90498 1.48703 1.64897 1.33475 1.19271 0.99489 0.95945 0.87920 1.21073 1.35195 1.04206 0.94768 0.90492 1.24993 0.96013 0.98552 0.94829 1.69930 1.46781 1.38208 0.98931 0.86436 0.80424 0.82529 0.77396 1.19998 1.21294 1.19991 1.22257 1.00824 0.94271 1.00496 1.21609 0.79221 1.02531 0.97658 0.89804 0.88711 0.88556 0.90478 0.88206 0.89762 0.89644 0.88816 0.80241 0.81065 0.76115 0.92918 0.92912 0.92642 0.89774 0.89938 0.90838 0.88194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.96 10.11 36.01 0.36 -0.60 16 2 C 0.52 4.90 7.79 -10.99 -0.09 4.82 16 3 O -0.55 -7.60 16.52 5.56 0.09 -7.51 16 4 N -0.61 -4.99 2.97 -172.77 -0.51 -5.51 16 5 C 0.10 0.60 6.30 -3.71 -0.02 0.57 16 6 C -0.14 -1.15 5.62 -26.61 -0.15 -1.30 16 7 C 0.17 1.68 2.92 -67.89 -0.20 1.48 16 8 N -0.39 -5.38 3.28 -53.86 -0.18 -5.56 16 9 N -0.30 -4.52 12.42 30.60 0.38 -4.14 16 10 C 0.06 0.87 12.01 -17.40 -0.21 0.66 16 11 C -0.29 -5.06 9.65 -39.78 -0.38 -5.45 16 12 C 0.32 5.24 7.66 -153.16 -1.17 4.07 16 13 N -0.67 -10.81 5.42 -11.46 -0.06 -10.87 16 14 C 0.52 10.85 7.79 -10.99 -0.09 10.77 16 15 O -0.50 -12.00 12.59 5.55 0.07 -11.93 16 16 C 0.01 0.30 5.46 -29.03 -0.16 0.15 16 17 C -0.51 -13.98 8.92 -34.44 -0.31 -14.29 16 18 H 0.08 2.18 6.75 -52.48 -0.35 1.82 16 19 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 20 N -0.90 -25.01 13.29 55.43 0.74 -24.27 16 21 Si 0.90 21.21 29.54 -169.99 -5.02 16.19 16 22 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 23 H -0.29 -6.60 7.11 56.52 0.40 -6.19 16 24 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 25 C -0.14 -1.35 5.63 -26.61 -0.15 -1.50 16 26 C 0.11 0.97 6.44 -3.72 -0.02 0.94 16 27 H 0.08 0.26 5.14 -51.93 -0.27 0.00 16 28 H 0.09 0.48 8.14 -51.93 -0.42 0.05 16 29 H 0.10 0.44 8.14 -51.93 -0.42 0.01 16 30 H 0.08 0.36 8.14 -51.93 -0.42 -0.07 16 31 H 0.10 0.36 5.14 -51.93 -0.27 0.10 16 32 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 33 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.09 0.80 6.81 -51.93 -0.35 0.45 16 35 H 0.18 2.01 8.06 -52.49 -0.42 1.59 16 36 H 0.17 3.34 5.83 -52.49 -0.31 3.03 16 37 H 0.40 5.15 7.53 -40.82 -0.31 4.84 16 38 H 0.05 1.22 8.14 -51.93 -0.42 0.80 16 39 H 0.05 1.23 8.14 -51.93 -0.42 0.80 16 40 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 41 H 0.08 0.97 8.14 -51.93 -0.42 0.54 16 42 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 43 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 44 H 0.10 1.00 7.00 -51.92 -0.36 0.64 16 LS Contribution 361.10 15.07 5.44 5.44 Total: -1.00 -34.38 361.10 -7.74 -42.12 By element: Atomic # 1 Polarization: 10.25 SS G_CDS: -6.00 Total: 4.24 kcal Atomic # 6 Polarization: 4.47 SS G_CDS: -2.68 Total: 1.79 kcal Atomic # 7 Polarization: -50.71 SS G_CDS: 0.36 Total: -50.34 kcal Atomic # 8 Polarization: -19.60 SS G_CDS: 0.16 Total: -19.44 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -34.38 -7.74 -42.12 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143193934.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.926 kcal (2) G-P(sol) polarization free energy of solvation -34.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.122 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.804 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds