Wall clock time and date at job start Tue Mar 31 2020 12:29:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09009 * 109.47468 * 2 1 4 4 C 1.53002 * 109.47302 * 240.00570 * 2 1 3 5 5 C 1.52999 * 109.47645 * 175.00262 * 4 2 1 6 6 H 1.08996 * 109.46929 * 54.98926 * 5 4 2 7 7 C 1.52997 * 109.47317 * 174.99822 * 5 4 2 8 8 N 1.46506 * 109.46684 * 294.99878 * 5 4 2 9 9 C 1.34775 * 119.99693 * 155.00124 * 8 5 4 10 10 O 1.21545 * 120.00064 * 359.97438 * 9 8 5 11 11 C 1.47856 * 119.99515 * 179.97438 * 9 8 5 12 12 C 1.39675 * 120.49410 * 359.72027 * 11 9 8 13 13 N 1.31732 * 120.88170 * 179.77043 * 12 11 9 14 14 C 1.31759 * 122.03892 * 0.49530 * 13 12 11 15 15 C 1.39635 * 120.88304 * 359.77049 * 14 13 12 16 16 C 1.47856 * 120.48897 * 179.97438 * 15 14 13 17 17 N 1.34774 * 120.00035 * 0.02562 * 16 15 14 18 18 O 1.21556 * 120.00147 * 180.02562 * 16 15 14 19 19 C 1.39725 * 120.48819 * 179.97438 * 11 9 8 20 20 N 1.46494 * 109.47479 * 120.00352 * 2 1 3 21 21 C 1.36943 * 119.99875 * 275.00252 * 20 2 1 22 22 H 1.07996 * 119.99674 * 359.97438 * 21 20 2 23 23 C 1.38814 * 119.99895 * 179.97438 * 21 20 2 24 24 N 1.31625 * 119.99688 * 0.02562 * 23 21 20 25 25 Si 1.86791 * 119.99942 * 179.97438 * 23 21 20 26 26 H 1.48499 * 109.47257 * 0.02562 * 25 23 21 27 27 H 1.48498 * 109.47207 * 120.00385 * 25 23 21 28 28 H 1.48504 * 109.47313 * 240.00454 * 25 23 21 29 29 H 1.08999 * 109.47208 * 299.99849 * 1 2 3 30 30 H 1.09006 * 109.47242 * 59.99679 * 1 2 3 31 31 H 1.08999 * 109.46966 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.47430 * 54.99514 * 4 2 1 33 33 H 1.09006 * 109.46455 * 295.00262 * 4 2 1 34 34 H 1.09002 * 109.47153 * 299.99641 * 7 5 4 35 35 H 1.09001 * 109.46832 * 179.97438 * 7 5 4 36 36 H 1.09004 * 109.47261 * 59.99813 * 7 5 4 37 37 H 0.97000 * 120.00117 * 334.99772 * 8 5 4 38 38 H 1.08000 * 119.55813 * 0.02562 * 12 11 9 39 39 H 1.08001 * 119.55967 * 179.74841 * 14 13 12 40 40 H 0.96996 * 120.00183 * 359.97438 * 17 16 15 41 41 H 0.97002 * 119.99572 * 179.97438 * 17 16 15 42 42 H 1.08000 * 120.92102 * 359.95891 * 19 11 9 43 43 H 0.96999 * 120.00118 * 94.99541 * 20 2 1 44 44 H 0.97004 * 119.99117 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2493 5 6 3.5649 -0.6133 -1.3138 6 1 3.9954 -0.9922 -0.3869 7 6 4.0851 -1.4382 -2.4926 8 7 3.9480 0.7895 -1.4924 9 6 5.1612 1.2135 -1.0867 10 8 5.9373 0.4323 -0.5722 11 6 5.5481 2.6291 -1.2675 12 6 4.6665 3.5343 -1.8628 13 7 5.0015 4.7981 -2.0236 14 6 6.1742 5.2641 -1.6445 15 6 7.1182 4.4275 -1.0456 16 6 8.4318 4.9595 -0.6241 17 7 8.7250 6.2608 -0.8165 18 8 9.2472 4.2232 -0.1040 19 6 6.8030 3.0799 -0.8502 20 7 2.0184 -0.6906 1.1960 21 6 2.1492 -0.0075 2.3757 22 1 1.8926 1.0404 2.4241 23 6 2.6114 -0.6621 3.5092 24 7 2.9246 -1.9392 3.4499 25 14 2.7905 0.2698 5.1181 26 1 2.3765 1.6822 4.9208 27 1 1.9295 -0.3581 6.1523 28 1 4.2074 0.2261 5.5605 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.6054 -0.2616 -2.1370 33 1 1.7516 -1.7714 -1.2057 34 1 3.8001 -2.4818 -2.3597 35 1 5.1714 -1.3609 -2.5388 36 1 3.6545 -1.0592 -3.4195 37 1 3.3285 1.4130 -1.9028 38 1 3.6956 3.1944 -2.1920 39 1 6.4085 6.3069 -1.7994 40 1 8.0745 6.8483 -1.2318 41 1 9.5867 6.6098 -0.5395 42 1 7.5098 2.4058 -0.3895 43 1 2.2490 -1.6318 1.1525 44 1 3.2479 -2.3964 4.2420 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001146409421.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:29:44 Heat of formation + Delta-G solvation = -64.611573 kcal Electronic energy + Delta-G solvation = -26864.515582 eV Core-core repulsion = 23008.516361 eV Total energy + Delta-G solvation = -3855.999221 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.01643 -40.77206 -39.76313 -38.30920 -36.13082 -35.09355 -34.11663 -33.78255 -33.02169 -31.39897 -30.38074 -27.58264 -26.23867 -25.72075 -25.44970 -23.14587 -22.28232 -21.44742 -21.20960 -19.73000 -19.22517 -18.40886 -18.13581 -17.87514 -17.23127 -16.69329 -16.45168 -16.29540 -15.93096 -15.68026 -15.61889 -15.35663 -14.89983 -14.63405 -14.51262 -14.36599 -14.21272 -13.72069 -13.56562 -13.35263 -13.17430 -12.96403 -12.80172 -12.66103 -12.25421 -12.15882 -11.87957 -11.81838 -11.55334 -11.40625 -11.22672 -11.19874 -10.92368 -10.84639 -10.64247 -10.47600 -10.03317 -8.94027 -7.92826 -5.17349 -0.73213 -0.32294 1.40267 1.42860 1.47723 1.50363 1.92633 2.03103 2.36220 2.55149 2.71316 3.07113 3.42364 3.44033 3.56878 3.60080 3.81241 3.87531 3.94073 4.04223 4.12970 4.24835 4.42435 4.56262 4.69725 4.73386 4.81507 4.81869 4.85795 4.96093 5.06513 5.13838 5.18942 5.24652 5.37003 5.42718 5.51083 5.61779 5.67253 5.77291 6.28418 6.31164 6.48969 6.55021 7.17088 7.20717 7.36887 8.18465 8.36650 9.31268 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.010546 B = 0.003895 C = 0.003289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2654.332158 B = 7186.630236 C = 8510.347308 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.162 3.838 3 H 0.045 0.955 4 C -0.118 4.118 5 C 0.145 3.855 6 H 0.047 0.953 7 C -0.152 4.152 8 N -0.692 5.692 9 C 0.556 3.444 10 O -0.581 6.581 11 C -0.198 4.198 12 C 0.175 3.825 13 N -0.488 5.488 14 C 0.175 3.825 15 C -0.205 4.205 16 C 0.569 3.431 17 N -0.818 5.818 18 O -0.587 6.587 19 C 0.019 3.981 20 N -0.732 5.732 21 C -0.222 4.222 22 H 0.071 0.929 23 C -0.078 4.078 24 N -0.968 5.968 25 Si 0.957 3.043 26 H -0.266 1.266 27 H -0.291 1.291 28 H -0.304 1.304 29 H 0.028 0.972 30 H 0.080 0.920 31 H 0.041 0.959 32 H 0.113 0.887 33 H 0.077 0.923 34 H 0.070 0.930 35 H 0.035 0.965 36 H 0.087 0.913 37 H 0.413 0.587 38 H 0.198 0.802 39 H 0.214 0.786 40 H 0.421 0.579 41 H 0.418 0.582 42 H 0.126 0.874 43 H 0.370 0.630 44 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.056 18.654 -20.023 27.443 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.054 3.946 3 H 0.063 0.937 4 C -0.156 4.156 5 C 0.041 3.959 6 H 0.065 0.935 7 C -0.210 4.210 8 N -0.344 5.344 9 C 0.342 3.658 10 O -0.461 6.461 11 C -0.204 4.204 12 C 0.018 3.982 13 N -0.195 5.195 14 C 0.017 3.983 15 C -0.210 4.210 16 C 0.353 3.647 17 N -0.384 5.384 18 O -0.467 6.467 19 C -0.008 4.008 20 N -0.373 5.373 21 C -0.355 4.355 22 H 0.089 0.911 23 C -0.270 4.270 24 N -0.620 5.620 25 Si 0.787 3.213 26 H -0.190 1.190 27 H -0.218 1.218 28 H -0.232 1.232 29 H 0.047 0.953 30 H 0.098 0.902 31 H 0.060 0.940 32 H 0.131 0.869 33 H 0.096 0.904 34 H 0.089 0.911 35 H 0.054 0.946 36 H 0.105 0.895 37 H 0.252 0.748 38 H 0.215 0.785 39 H 0.231 0.769 40 H 0.254 0.746 41 H 0.251 0.749 42 H 0.144 0.856 43 H 0.201 0.799 44 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 2.342 18.251 -19.651 26.921 hybrid contribution 0.991 -0.556 1.889 2.205 sum 3.333 17.695 -17.761 25.292 Atomic orbital electron populations 1.22309 0.97615 1.00863 1.00830 1.20565 0.92721 0.95362 0.85961 0.93661 1.22101 0.92279 1.02500 0.98725 1.20912 0.95976 0.80455 0.98568 0.93471 1.22091 1.00313 1.00346 0.98239 1.45703 1.15433 1.11925 1.61314 1.18324 0.82525 0.87283 0.77629 1.90811 1.52893 1.57312 1.45080 1.20917 0.97212 0.95120 1.07107 1.23630 0.98624 0.87610 0.88382 1.67894 1.18449 1.14570 1.18625 1.23851 0.86377 1.01092 0.86997 1.20913 0.97652 0.94820 1.07635 1.18061 0.85707 0.83395 0.77498 1.43444 1.22680 1.08429 1.63806 1.90865 1.50920 1.59436 1.45521 1.21806 0.94553 0.95248 0.89181 1.42632 1.78170 1.10129 1.06330 1.19545 1.33674 0.93790 0.88451 0.91109 1.25399 1.03724 0.96805 1.01101 1.69804 1.53238 1.10085 1.28904 0.85298 0.76368 0.78506 0.81080 1.19009 1.21834 1.23234 0.95281 0.90162 0.94025 0.86883 0.90432 0.91090 0.94581 0.89455 0.74819 0.78542 0.76916 0.74598 0.74916 0.85610 0.79869 0.94477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.85 9.49 71.98 0.68 -4.17 16 2 C 0.16 5.64 2.84 44.99 0.13 5.77 16 3 H 0.05 1.58 7.56 -2.38 -0.02 1.56 16 4 C -0.12 -3.10 4.29 30.59 0.13 -2.97 16 5 C 0.15 4.46 2.52 44.99 0.11 4.57 16 6 H 0.05 2.07 7.05 -2.39 -0.02 2.06 16 7 C -0.15 -3.83 9.48 71.98 0.68 -3.14 16 8 N -0.69 -18.44 4.40 -445.40 -1.96 -20.40 16 9 C 0.56 18.71 7.74 86.79 0.67 19.38 16 10 O -0.58 -26.38 16.07 -3.86 -0.06 -26.45 16 11 C -0.20 -5.26 5.89 -20.02 -0.12 -5.38 16 12 C 0.18 3.17 10.71 85.06 0.91 4.08 16 13 N -0.49 -7.88 10.33 -193.69 -2.00 -9.88 16 14 C 0.18 2.30 10.71 85.04 0.91 3.21 16 15 C -0.20 -4.22 5.89 -20.02 -0.12 -4.34 16 16 C 0.57 11.95 8.05 86.79 0.70 12.65 16 17 N -0.82 -7.04 8.83 -175.59 -1.55 -8.59 16 18 O -0.59 -19.06 17.25 -3.89 -0.07 -19.12 16 19 C 0.02 0.56 9.25 23.00 0.21 0.77 16 20 N -0.73 -35.98 4.49 -322.94 -1.45 -37.43 16 21 C -0.22 -12.47 9.93 84.03 0.83 -11.64 16 22 H 0.07 3.85 7.83 -2.91 -0.02 3.83 16 23 C -0.08 -4.68 5.50 84.86 0.47 -4.21 16 24 N -0.97 -61.84 13.06 21.65 0.28 -61.56 16 25 Si 0.96 48.72 29.55 68.60 2.03 50.75 16 26 H -0.27 -12.62 7.11 99.48 0.71 -11.91 16 27 H -0.29 -14.62 7.11 99.48 0.71 -13.92 16 28 H -0.30 -15.98 7.11 99.48 0.71 -15.28 16 29 H 0.03 1.02 8.14 -2.39 -0.02 1.00 16 30 H 0.08 1.78 8.14 -2.38 -0.02 1.76 16 31 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 32 H 0.11 1.91 8.14 -2.39 -0.02 1.89 16 33 H 0.08 2.11 8.14 -2.38 -0.02 2.09 16 34 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 35 H 0.03 1.06 8.14 -2.39 -0.02 1.04 16 36 H 0.09 1.58 8.14 -2.38 -0.02 1.56 16 37 H 0.41 7.19 6.66 -92.71 -0.62 6.58 16 38 H 0.20 2.13 6.41 -2.91 -0.02 2.11 16 39 H 0.21 0.43 6.41 -2.91 -0.02 0.41 16 40 H 0.42 0.11 6.88 -92.71 -0.64 -0.53 16 41 H 0.42 2.72 8.93 -92.71 -0.83 1.89 16 42 H 0.13 4.46 7.40 -2.91 -0.02 4.44 16 43 H 0.37 19.97 7.80 -92.71 -0.72 19.25 16 44 H 0.25 15.42 8.31 -92.71 -0.77 14.65 16 Total: -1.00 -90.33 373.96 -0.30 -90.63 By element: Atomic # 1 Polarization: 29.20 SS G_CDS: -1.73 Total: 27.47 kcal Atomic # 6 Polarization: 8.37 SS G_CDS: 6.21 Total: 14.58 kcal Atomic # 7 Polarization: -131.18 SS G_CDS: -6.68 Total: -137.86 kcal Atomic # 8 Polarization: -45.44 SS G_CDS: -0.13 Total: -45.57 kcal Atomic # 14 Polarization: 48.72 SS G_CDS: 2.03 Total: 50.75 kcal Total: -90.33 -0.30 -90.63 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001146409421.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.016 kcal (2) G-P(sol) polarization free energy of solvation -90.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.627 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds