Wall clock time and date at job start Tue Mar 31 2020 12:29:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09002 * 109.47007 * 2 1 4 4 C 1.52993 * 109.47176 * 120.00327 * 2 1 3 5 5 C 1.52997 * 109.47313 * 185.00043 * 4 2 1 6 6 H 1.08993 * 109.47052 * 304.99812 * 5 4 2 7 7 C 1.52996 * 109.47059 * 184.99767 * 5 4 2 8 8 N 1.46496 * 109.47115 * 64.99880 * 5 4 2 9 9 C 1.34776 * 120.00064 * 205.00263 * 8 5 4 10 10 O 1.21552 * 120.00198 * 359.97438 * 9 8 5 11 11 C 1.47857 * 119.99920 * 179.97438 * 9 8 5 12 12 C 1.39670 * 120.49277 * 0.02562 * 11 9 8 13 13 N 1.31725 * 120.88024 * 180.23543 * 12 11 9 14 14 C 1.31769 * 122.04185 * 359.46488 * 13 12 11 15 15 C 1.39630 * 120.88043 * 0.53315 * 14 13 12 16 16 C 1.47853 * 120.48859 * 179.71989 * 15 14 13 17 17 N 1.34767 * 120.00263 * 0.02587 * 16 15 14 18 18 O 1.21553 * 119.99774 * 180.02562 * 16 15 14 19 19 C 1.39729 * 120.48679 * 179.97438 * 11 9 8 20 20 N 1.46500 * 109.46938 * 240.00353 * 2 1 3 21 21 C 1.36941 * 120.00546 * 85.00112 * 20 2 1 22 22 H 1.08002 * 119.99112 * 359.97438 * 21 20 2 23 23 C 1.38809 * 120.00335 * 179.97438 * 21 20 2 24 24 N 1.31615 * 119.99926 * 180.02562 * 23 21 20 25 25 Si 1.86797 * 119.99953 * 359.97438 * 23 21 20 26 26 H 1.48498 * 109.46922 * 90.00363 * 25 23 21 27 27 H 1.48504 * 109.47078 * 210.00089 * 25 23 21 28 28 H 1.48498 * 109.47341 * 330.00183 * 25 23 21 29 29 H 1.08995 * 109.46838 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.47001 * 299.99563 * 1 2 3 31 31 H 1.09007 * 109.46757 * 59.99950 * 1 2 3 32 32 H 1.09004 * 109.47428 * 64.99505 * 4 2 1 33 33 H 1.09006 * 109.47009 * 305.00364 * 4 2 1 34 34 H 1.09001 * 109.46937 * 179.97438 * 7 5 4 35 35 H 1.08998 * 109.47645 * 299.99798 * 7 5 4 36 36 H 1.08997 * 109.47265 * 60.00278 * 7 5 4 37 37 H 0.96998 * 120.00097 * 25.00125 * 8 5 4 38 38 H 1.08002 * 119.55677 * 359.94775 * 12 11 9 39 39 H 1.08000 * 119.55649 * 180.25200 * 14 13 12 40 40 H 0.97005 * 120.00397 * 359.97438 * 17 16 15 41 41 H 0.96998 * 120.00264 * 180.02562 * 17 16 15 42 42 H 1.07997 * 120.92593 * 0.02562 * 19 11 9 43 43 H 0.97008 * 120.00164 * 264.99629 * 20 2 1 44 44 H 0.96999 * 120.00073 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 1.2491 5 6 3.5649 -0.6133 1.3136 6 1 3.9954 -0.9923 0.3868 7 6 4.0851 -1.4384 2.4924 8 7 3.9480 0.7893 1.4924 9 6 5.1612 1.2135 1.0867 10 8 5.9377 0.4322 0.5728 11 6 5.5476 2.6293 1.2667 12 6 4.6637 3.5357 1.8564 13 7 4.9982 4.7997 2.0163 14 6 6.1731 5.2646 1.6421 15 6 7.1175 4.4279 1.0440 16 6 8.4307 4.9601 0.6219 17 7 8.7238 6.2614 0.8140 18 8 9.2461 4.2239 0.1017 19 6 6.8030 3.0799 0.8503 20 7 2.0184 -0.6905 -1.1962 21 6 2.1492 -0.0074 -2.3758 22 1 1.8920 1.0404 -2.4243 23 6 2.6124 -0.6616 -3.5091 24 7 2.7385 -0.0049 -4.6427 25 14 3.0579 -2.4737 -3.4249 26 1 1.8612 -3.2930 -3.7443 27 1 4.1336 -2.7651 -4.4064 28 1 3.5331 -2.8037 -2.0573 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5137 0.8900 31 1 -0.3633 0.5139 -0.8901 32 1 1.7516 -1.7716 1.2055 33 1 1.6054 -0.2618 2.1369 34 1 5.1715 -1.3618 2.5380 35 1 3.6546 -1.0595 3.4193 36 1 3.8001 -2.4820 2.3593 37 1 3.3285 1.4127 1.9028 38 1 3.6911 3.1968 2.1814 39 1 6.4069 6.3077 1.7961 40 1 8.0730 6.8491 1.2289 41 1 9.5852 6.6107 0.5368 42 1 7.5105 2.4055 0.3911 43 1 2.2491 -1.6318 -1.1527 44 1 3.0618 -0.4621 -5.4347 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001146409422.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:29:48 Heat of formation + Delta-G solvation = -29.292621 kcal Electronic energy + Delta-G solvation = -26911.567993 eV Core-core repulsion = 23057.100317 eV Total energy + Delta-G solvation = -3854.467676 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.08574 -39.69995 -38.80776 -37.01553 -34.68670 -34.27675 -32.85842 -32.46887 -31.81249 -30.36266 -29.21995 -26.46357 -25.35063 -24.58310 -23.30263 -22.16152 -21.17845 -20.38156 -19.88114 -18.83164 -17.67990 -17.55556 -17.19179 -17.02903 -16.14619 -15.52153 -15.35861 -14.92544 -14.76674 -14.56151 -14.18105 -13.91494 -13.69136 -13.59493 -13.40914 -13.07071 -12.91146 -12.64414 -12.41605 -12.15819 -11.99555 -11.74769 -11.27619 -10.92806 -10.86904 -10.67963 -10.52272 -10.28948 -10.22587 -10.12320 -10.10908 -9.96869 -9.63454 -9.59333 -9.54296 -8.90201 -8.88727 -7.22860 -5.72069 -3.07306 0.11398 0.66080 2.38130 2.94702 2.98972 3.22711 3.42654 3.45082 3.51172 3.65478 3.78999 4.29954 4.36282 4.53795 4.64632 4.68339 4.82856 4.90076 5.03052 5.21191 5.26682 5.49252 5.57155 5.62624 5.72528 5.73190 5.77913 5.84078 5.97214 6.05248 6.15841 6.21742 6.29658 6.37502 6.40449 6.48633 6.64179 6.78672 6.87666 6.97149 7.35770 7.56788 7.84818 8.02535 8.30003 8.46638 9.25038 9.97945 10.16600 11.46499 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.012148 B = 0.003709 C = 0.003324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2304.260391 B = 7548.376154 C = 8422.683889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.176 3.824 3 H 0.053 0.947 4 C -0.135 4.135 5 C 0.143 3.857 6 H 0.103 0.897 7 C -0.162 4.162 8 N -0.709 5.709 9 C 0.564 3.436 10 O -0.520 6.520 11 C -0.180 4.180 12 C 0.159 3.841 13 N -0.487 5.487 14 C 0.152 3.848 15 C -0.200 4.200 16 C 0.571 3.429 17 N -0.850 5.850 18 O -0.528 6.528 19 C 0.043 3.957 20 N -0.745 5.745 21 C -0.240 4.240 22 H 0.087 0.913 23 C 0.006 3.994 24 N -0.934 5.934 25 Si 0.883 3.117 26 H -0.286 1.286 27 H -0.292 1.292 28 H -0.276 1.276 29 H 0.045 0.955 30 H 0.038 0.962 31 H 0.057 0.943 32 H 0.076 0.924 33 H 0.067 0.933 34 H 0.058 0.942 35 H 0.053 0.947 36 H 0.064 0.936 37 H 0.394 0.606 38 H 0.166 0.834 39 H 0.163 0.837 40 H 0.401 0.599 41 H 0.408 0.592 42 H 0.162 0.838 43 H 0.360 0.640 44 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.543 10.881 19.989 23.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.067 3.933 3 H 0.071 0.929 4 C -0.174 4.174 5 C 0.039 3.961 6 H 0.121 0.879 7 C -0.221 4.221 8 N -0.360 5.360 9 C 0.349 3.651 10 O -0.396 6.396 11 C -0.186 4.186 12 C 0.001 3.999 13 N -0.194 5.194 14 C -0.007 4.007 15 C -0.206 4.206 16 C 0.355 3.645 17 N -0.414 5.414 18 O -0.404 6.404 19 C 0.016 3.984 20 N -0.389 5.389 21 C -0.370 4.370 22 H 0.105 0.895 23 C -0.189 4.189 24 N -0.582 5.582 25 Si 0.713 3.287 26 H -0.213 1.213 27 H -0.218 1.218 28 H -0.202 1.202 29 H 0.064 0.936 30 H 0.057 0.943 31 H 0.076 0.924 32 H 0.095 0.905 33 H 0.086 0.914 34 H 0.077 0.923 35 H 0.072 0.928 36 H 0.083 0.917 37 H 0.229 0.771 38 H 0.183 0.817 39 H 0.180 0.820 40 H 0.230 0.770 41 H 0.240 0.760 42 H 0.180 0.820 43 H 0.193 0.807 44 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 4.914 10.411 19.485 22.632 hybrid contribution 0.517 -1.015 -0.295 1.177 sum 5.430 9.396 19.190 22.046 Atomic orbital electron populations 1.22426 0.98919 1.00884 1.00365 1.20200 0.91837 0.95773 0.85520 0.92855 1.22236 0.93565 1.02362 0.99230 1.21074 0.95256 0.79847 0.99938 0.87919 1.22195 1.01734 1.00116 0.98012 1.45836 1.15974 1.11872 1.62339 1.17800 0.82438 0.86412 0.78461 1.90830 1.51046 1.55498 1.42249 1.21108 0.96520 0.96188 1.04744 1.23218 0.98344 0.88006 0.90287 1.67702 1.18027 1.15245 1.18469 1.23106 0.87939 0.99521 0.90106 1.20875 0.96897 0.95793 1.07003 1.17954 0.86222 0.82307 0.77976 1.43690 1.21868 1.10173 1.65693 1.90881 1.49330 1.57646 1.42553 1.21913 0.94503 0.94008 0.87972 1.42775 1.79595 1.09355 1.07137 1.18991 1.36985 0.95425 0.85575 0.89485 1.24637 1.01286 0.97421 0.95591 1.69692 1.52692 1.35547 1.00289 0.86574 0.77971 0.86934 0.77205 1.21284 1.21812 1.20217 0.93597 0.94325 0.92393 0.90520 0.91407 0.92323 0.92782 0.91667 0.77080 0.81681 0.82011 0.76989 0.76037 0.82037 0.80737 0.93140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.67 9.49 37.16 0.35 -2.32 16 2 C 0.18 3.07 2.84 -67.93 -0.19 2.88 16 3 H 0.05 0.96 7.56 -51.93 -0.39 0.57 16 4 C -0.14 -1.81 4.29 -26.74 -0.11 -1.92 16 5 C 0.14 2.08 2.52 -67.94 -0.17 1.91 16 6 H 0.10 1.99 7.05 -51.93 -0.37 1.62 16 7 C -0.16 -1.97 9.48 37.16 0.35 -1.62 16 8 N -0.71 -9.40 4.40 -54.75 -0.24 -9.64 16 9 C 0.56 8.94 7.75 -12.32 -0.10 8.85 16 10 O -0.52 -10.55 16.08 5.32 0.09 -10.46 16 11 C -0.18 -2.38 5.89 -104.87 -0.62 -2.99 16 12 C 0.16 1.67 10.71 -17.06 -0.18 1.49 16 13 N -0.49 -4.96 10.33 -12.58 -0.13 -5.09 16 14 C 0.15 1.31 10.71 -17.06 -0.18 1.12 16 15 C -0.20 -2.19 5.89 -104.87 -0.62 -2.81 16 16 C 0.57 6.26 8.05 -12.33 -0.10 6.16 16 17 N -0.85 -4.94 8.83 30.53 0.27 -4.67 16 18 O -0.53 -8.23 17.25 5.32 0.09 -8.13 16 19 C 0.04 0.58 9.25 -38.45 -0.36 0.23 16 20 N -0.75 -17.00 4.30 -53.42 -0.23 -17.23 16 21 C -0.24 -6.72 10.41 -15.06 -0.16 -6.88 16 22 H 0.09 2.63 8.06 -52.49 -0.42 2.20 16 23 C 0.01 0.19 5.50 -17.43 -0.10 0.09 16 24 N -0.93 -29.94 13.97 55.49 0.78 -29.16 16 25 Si 0.88 22.76 27.73 -169.99 -4.71 18.05 16 26 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 27 H -0.29 -7.74 7.11 56.52 0.40 -7.34 16 28 H -0.28 -6.71 6.52 56.52 0.37 -6.34 16 29 H 0.04 0.73 8.14 -51.93 -0.42 0.30 16 30 H 0.04 0.50 8.14 -51.93 -0.42 0.07 16 31 H 0.06 1.07 8.14 -51.92 -0.42 0.64 16 32 H 0.08 1.01 8.14 -51.93 -0.42 0.58 16 33 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 34 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 36 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.39 3.87 6.66 -40.82 -0.27 3.59 16 38 H 0.17 1.24 6.41 -52.49 -0.34 0.91 16 39 H 0.16 0.68 6.41 -52.49 -0.34 0.34 16 40 H 0.40 1.01 6.89 -40.82 -0.28 0.73 16 41 H 0.41 1.88 8.93 -40.82 -0.36 1.52 16 42 H 0.16 2.49 7.40 -52.49 -0.39 2.10 16 43 H 0.36 8.21 5.66 -40.82 -0.23 7.98 16 44 H 0.26 7.95 8.31 -40.82 -0.34 7.61 16 LS Contribution 370.85 15.07 5.59 5.59 Total: -1.00 -38.63 370.85 -6.62 -45.25 By element: Atomic # 1 Polarization: 17.25 SS G_CDS: -5.94 Total: 11.31 kcal Atomic # 6 Polarization: 6.37 SS G_CDS: -2.18 Total: 4.19 kcal Atomic # 7 Polarization: -66.24 SS G_CDS: 0.44 Total: -65.79 kcal Atomic # 8 Polarization: -18.78 SS G_CDS: 0.18 Total: -18.60 kcal Atomic # 14 Polarization: 22.76 SS G_CDS: -4.71 Total: 18.05 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -38.63 -6.62 -45.25 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001146409422.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.957 kcal (2) G-P(sol) polarization free energy of solvation -38.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.250 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds