Wall clock time and date at job start Tue Mar 31 2020 12:29:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.47150 * 2 1 4 4 C 1.53002 * 109.47083 * 240.00469 * 2 1 3 5 5 C 1.52992 * 109.47272 * 174.71325 * 4 2 1 6 6 H 1.09005 * 109.47323 * 54.13621 * 5 4 2 7 7 C 1.53001 * 109.47436 * 294.13487 * 5 4 2 8 8 N 1.46497 * 109.47383 * 174.13147 * 5 4 2 9 9 C 1.36932 * 120.00777 * 201.51187 * 8 5 4 10 10 H 1.08001 * 119.99707 * 4.86561 * 9 8 5 11 11 C 1.38804 * 120.00543 * 184.59123 * 9 8 5 12 12 N 1.31627 * 120.00331 * 174.67824 * 11 9 8 13 13 Si 1.86805 * 119.99921 * 354.68334 * 11 9 8 14 14 H 1.48499 * 109.47217 * 94.37343 * 13 11 9 15 15 H 1.48504 * 109.47014 * 214.37709 * 13 11 9 16 16 H 1.48493 * 109.46842 * 334.37274 * 13 11 9 17 17 N 1.46504 * 109.47315 * 120.00380 * 2 1 3 18 18 C 1.34770 * 119.99890 * 277.91930 * 17 2 1 19 19 O 1.21559 * 120.00210 * 4.71103 * 18 17 2 20 20 C 1.47853 * 120.00082 * 184.71066 * 18 17 2 21 21 C 1.39675 * 120.48952 * 5.07224 * 20 18 17 22 22 N 1.31732 * 120.87781 * 179.77242 * 21 20 18 23 23 C 1.31755 * 122.04562 * 0.49653 * 22 21 20 24 24 C 1.39639 * 120.87902 * 359.77655 * 23 22 21 25 25 C 1.47856 * 120.48908 * 179.97438 * 24 23 22 26 26 N 1.34779 * 119.99815 * 0.02562 * 25 24 23 27 27 O 1.21554 * 119.99910 * 180.02562 * 25 24 23 28 28 C 1.39726 * 120.49255 * 185.35808 * 20 18 17 29 29 H 1.08993 * 109.47563 * 59.99958 * 1 2 3 30 30 H 1.08998 * 109.47150 * 180.02562 * 1 2 3 31 31 H 1.09006 * 109.47001 * 299.99280 * 1 2 3 32 32 H 1.09003 * 109.47229 * 54.71032 * 4 2 1 33 33 H 1.09004 * 109.46757 * 294.71369 * 4 2 1 34 34 H 1.08996 * 109.47031 * 300.00103 * 7 5 4 35 35 H 1.09001 * 109.46750 * 59.99974 * 7 5 4 36 36 H 1.08995 * 109.47269 * 179.97438 * 7 5 4 37 37 H 0.97006 * 119.99555 * 21.51836 * 8 5 4 38 38 H 0.97000 * 120.00318 * 180.02562 * 12 11 9 39 39 H 0.97002 * 120.00011 * 97.91929 * 17 2 1 40 40 H 1.08003 * 119.55906 * 0.02562 * 21 20 18 41 41 H 1.07994 * 119.56466 * 179.74414 * 23 22 21 42 42 H 0.96996 * 120.00249 * 0.02562 * 26 25 24 43 43 H 0.97002 * 119.99512 * 180.02562 * 26 25 24 44 44 H 1.07998 * 120.91986 * 359.94302 * 28 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5641 -0.6071 -1.3176 6 1 3.9977 -0.9686 -0.3851 7 6 3.9572 0.8563 -1.5291 8 7 4.0647 -1.4134 -2.4336 9 6 5.3687 -1.8314 -2.4457 10 1 6.0067 -1.6343 -1.5969 11 6 5.8688 -2.5133 -3.5463 12 7 7.1469 -2.8229 -3.6038 13 14 4.7281 -2.9915 -4.9462 14 1 4.7741 -1.9473 -6.0010 15 1 5.1633 -4.2915 -5.5172 16 1 3.3402 -3.1161 -4.4332 17 7 2.0184 -0.6907 1.1961 18 6 2.0914 -0.0341 2.3708 19 8 1.6726 1.1037 2.4582 20 6 2.6810 -0.6976 3.5532 21 6 3.2605 -1.9634 3.4401 22 7 3.7919 -2.5597 4.4877 23 6 3.7949 -2.0034 5.6820 24 6 3.2320 -0.7419 5.8864 25 6 3.2396 -0.1259 7.2305 26 7 3.7931 -0.7822 8.2694 27 8 2.7466 0.9725 7.3984 28 6 2.6613 -0.0703 4.8016 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8901 32 1 1.6014 -0.2649 -2.1368 33 1 1.7560 -1.7725 -1.2033 34 1 3.5237 1.2178 -2.4616 35 1 3.5847 1.4562 -0.6987 36 1 5.0430 0.9376 -1.5773 37 1 3.4724 -1.6512 -3.1641 38 1 7.4965 -3.2991 -4.3732 39 1 2.2892 -1.6206 1.1426 40 1 3.2767 -2.4581 2.4802 41 1 4.2382 -2.5301 6.5141 42 1 4.1868 -1.6584 8.1353 43 1 3.7977 -0.3781 9.1513 44 1 2.2180 0.9068 4.9248 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001146409423.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:29:51 Heat of formation + Delta-G solvation = -30.257807 kcal Electronic energy + Delta-G solvation = -26408.011218 eV Core-core repulsion = 22553.501688 eV Total energy + Delta-G solvation = -3854.509530 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.23275 -39.90595 -38.96246 -37.15503 -34.87990 -34.39876 -33.01319 -32.64664 -31.83578 -30.53732 -29.09878 -26.45321 -25.47851 -24.77448 -23.58856 -22.27233 -21.28558 -20.53780 -19.87423 -18.95978 -17.79215 -17.63923 -17.29135 -17.14876 -16.28852 -15.65349 -15.51607 -15.14103 -14.78966 -14.69715 -14.40132 -14.02304 -13.83938 -13.69601 -13.55995 -13.32330 -12.98441 -12.64726 -12.58760 -12.21205 -12.01002 -11.78528 -11.36824 -11.03244 -11.00160 -10.72165 -10.59946 -10.37882 -10.31137 -10.23851 -10.22779 -10.02517 -9.79059 -9.72822 -9.61976 -9.12471 -8.95696 -7.30497 -5.80195 -3.15646 -0.01175 0.51309 2.24237 2.77255 2.80155 3.05865 3.34502 3.36847 3.43090 3.48443 3.71059 4.17011 4.25123 4.40037 4.53041 4.56077 4.69345 4.72960 4.90112 5.10142 5.22616 5.44318 5.45831 5.51625 5.57631 5.62159 5.66770 5.78618 5.90097 5.92708 6.05795 6.15049 6.20391 6.25661 6.33739 6.46839 6.51241 6.76002 6.79399 7.01102 7.27747 7.35549 7.72019 7.97059 8.02384 8.38981 9.17834 9.90430 10.10413 11.38057 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.015865 B = 0.002876 C = 0.002582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1764.500641 B = 9731.834288 C =10839.743985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.145 3.855 3 H 0.094 0.906 4 C -0.138 4.138 5 C 0.178 3.822 6 H 0.051 0.949 7 C -0.167 4.167 8 N -0.750 5.750 9 C -0.242 4.242 10 H 0.089 0.911 11 C 0.004 3.996 12 N -0.933 5.933 13 Si 0.884 3.116 14 H -0.286 1.286 15 H -0.292 1.292 16 H -0.277 1.277 17 N -0.712 5.712 18 C 0.565 3.435 19 O -0.530 6.530 20 C -0.189 4.189 21 C 0.164 3.836 22 N -0.483 5.483 23 C 0.156 3.844 24 C -0.204 4.204 25 C 0.572 3.428 26 N -0.849 5.849 27 O -0.531 6.531 28 C 0.042 3.958 29 H 0.066 0.934 30 H 0.056 0.944 31 H 0.061 0.939 32 H 0.078 0.922 33 H 0.071 0.929 34 H 0.046 0.954 35 H 0.040 0.960 36 H 0.057 0.943 37 H 0.360 0.640 38 H 0.259 0.741 39 H 0.401 0.599 40 H 0.170 0.830 41 H 0.164 0.836 42 H 0.402 0.598 43 H 0.408 0.592 44 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.434 0.894 20.183 23.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.041 3.959 3 H 0.112 0.888 4 C -0.176 4.176 5 C 0.069 3.931 6 H 0.069 0.931 7 C -0.227 4.227 8 N -0.393 5.393 9 C -0.372 4.372 10 H 0.107 0.893 11 C -0.191 4.191 12 N -0.580 5.580 13 Si 0.715 3.285 14 H -0.212 1.212 15 H -0.218 1.218 16 H -0.203 1.203 17 N -0.363 5.363 18 C 0.350 3.650 19 O -0.408 6.408 20 C -0.194 4.194 21 C 0.007 3.993 22 N -0.191 5.191 23 C -0.003 4.003 24 C -0.209 4.209 25 C 0.357 3.643 26 N -0.413 5.413 27 O -0.408 6.408 28 C 0.015 3.985 29 H 0.085 0.915 30 H 0.075 0.925 31 H 0.080 0.920 32 H 0.097 0.903 33 H 0.089 0.911 34 H 0.065 0.935 35 H 0.059 0.941 36 H 0.076 0.924 37 H 0.193 0.807 38 H 0.069 0.931 39 H 0.237 0.763 40 H 0.187 0.813 41 H 0.181 0.819 42 H 0.231 0.769 43 H 0.240 0.760 44 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -11.457 1.561 20.074 23.166 hybrid contribution -0.555 -0.417 -0.771 1.037 sum -12.012 1.144 19.303 22.764 Atomic orbital electron populations 1.22178 0.95277 1.02098 1.02572 1.21108 0.93739 0.97819 0.83235 0.88802 1.22244 0.97993 1.00903 0.96494 1.20161 0.90124 0.90754 0.92046 0.93115 1.22450 1.02265 0.98213 0.99791 1.42799 1.10652 1.62596 1.23279 1.19027 0.85982 1.29774 1.02445 0.89337 1.24676 0.95585 1.01241 0.97640 1.69720 1.11568 1.45656 1.31088 0.86529 0.80603 0.78079 0.83323 1.21234 1.21809 1.20294 1.46037 1.66073 1.15630 1.08600 1.17856 0.78681 0.85832 0.82594 1.90802 1.47789 1.17853 1.84324 1.21073 1.05450 0.97488 0.95426 1.23370 0.88001 0.90020 0.97935 1.67759 1.16660 1.35543 0.99109 1.23184 0.91410 0.90447 0.95227 1.20888 1.06890 0.97977 0.95159 1.17946 0.77488 0.84708 0.84202 1.43705 1.62494 1.23278 1.11857 1.90868 1.45327 1.19850 1.84721 1.21862 0.88441 0.98998 0.89157 0.91500 0.92512 0.92036 0.90318 0.91060 0.93500 0.94127 0.92375 0.80695 0.93082 0.76265 0.81307 0.81918 0.76879 0.75992 0.82128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.72 9.42 37.16 0.35 -1.37 16 2 C 0.15 1.74 2.39 -67.93 -0.16 1.58 16 3 H 0.09 1.27 5.97 -51.93 -0.31 0.96 16 4 C -0.14 -1.84 4.36 -26.73 -0.12 -1.95 16 5 C 0.18 3.12 2.91 -67.94 -0.20 2.92 16 6 H 0.05 0.91 7.56 -51.93 -0.39 0.52 16 7 C -0.17 -2.90 9.22 37.16 0.34 -2.56 16 8 N -0.75 -16.66 4.96 -53.43 -0.27 -16.93 16 9 C -0.24 -6.57 10.37 -15.06 -0.16 -6.73 16 10 H 0.09 2.59 8.06 -52.49 -0.42 2.17 16 11 C 0.00 0.13 5.50 -17.43 -0.10 0.03 16 12 N -0.93 -28.78 13.97 55.49 0.78 -28.01 16 13 Si 0.88 21.52 27.78 -169.99 -4.72 16.79 16 14 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 15 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 16 H -0.28 -6.23 6.47 56.52 0.37 -5.87 16 17 N -0.71 -8.03 4.42 -54.74 -0.24 -8.27 16 18 C 0.56 7.20 7.69 -12.33 -0.09 7.10 16 19 O -0.53 -8.43 15.83 5.31 0.08 -8.34 16 20 C -0.19 -2.08 5.89 -104.87 -0.62 -2.70 16 21 C 0.16 1.62 10.69 -17.06 -0.18 1.44 16 22 N -0.48 -4.75 10.33 -12.57 -0.13 -4.88 16 23 C 0.16 1.19 10.71 -17.06 -0.18 1.00 16 24 C -0.20 -1.86 5.89 -104.87 -0.62 -2.48 16 25 C 0.57 5.23 8.05 -12.32 -0.10 5.13 16 26 N -0.85 -3.76 8.83 30.53 0.27 -3.49 16 27 O -0.53 -7.12 17.25 5.32 0.09 -7.03 16 28 C 0.04 0.47 9.25 -38.45 -0.36 0.11 16 29 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 31 H 0.06 0.72 7.80 -51.93 -0.41 0.31 16 32 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 33 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 34 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 35 H 0.04 0.62 6.49 -51.93 -0.34 0.28 16 36 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 37 H 0.36 7.88 5.62 -40.82 -0.23 7.65 16 38 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 39 H 0.40 3.82 6.68 -40.82 -0.27 3.55 16 40 H 0.17 1.37 6.48 -52.48 -0.34 1.03 16 41 H 0.16 0.56 6.41 -52.49 -0.34 0.22 16 42 H 0.40 0.57 6.88 -40.82 -0.28 0.29 16 43 H 0.41 1.33 8.93 -40.82 -0.36 0.97 16 44 H 0.16 1.96 7.41 -52.49 -0.39 1.57 16 LS Contribution 367.83 15.07 5.54 5.54 Total: -1.00 -36.48 367.83 -6.57 -43.05 By element: Atomic # 1 Polarization: 15.82 SS G_CDS: -5.79 Total: 10.03 kcal Atomic # 6 Polarization: 3.72 SS G_CDS: -2.19 Total: 1.53 kcal Atomic # 7 Polarization: -61.98 SS G_CDS: 0.41 Total: -61.57 kcal Atomic # 8 Polarization: -15.55 SS G_CDS: 0.18 Total: -15.37 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -4.72 Total: 16.79 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -36.48 -6.57 -43.05 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001146409423.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.789 kcal (2) G-P(sol) polarization free energy of solvation -36.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.047 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds