Wall clock time and date at job start Tue Mar 31 2020 12:29:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 109.47033 * 2 1 4 4 C 1.52997 * 109.47264 * 239.99923 * 2 1 3 5 5 C 1.53006 * 109.46841 * 174.99605 * 4 2 1 6 6 H 1.08994 * 109.47617 * 305.00348 * 5 4 2 7 7 C 1.52999 * 109.46692 * 185.00302 * 5 4 2 8 8 N 1.46495 * 109.46696 * 65.00499 * 5 4 2 9 9 C 1.34778 * 119.99718 * 204.99517 * 8 5 4 10 10 O 1.21543 * 120.00185 * 359.97438 * 9 8 5 11 11 C 1.47853 * 119.99916 * 179.97438 * 9 8 5 12 12 C 1.39678 * 120.49270 * 359.72702 * 11 9 8 13 13 N 1.31737 * 120.87686 * 179.76962 * 12 11 9 14 14 C 1.31747 * 122.04370 * 0.49327 * 13 12 11 15 15 C 1.39635 * 120.88729 * 359.77056 * 14 13 12 16 16 C 1.47852 * 120.49413 * 179.97438 * 15 14 13 17 17 N 1.34770 * 120.00081 * 0.02881 * 16 15 14 18 18 O 1.21554 * 120.00023 * 180.02562 * 16 15 14 19 19 C 1.39727 * 120.49042 * 180.02562 * 11 9 8 20 20 N 1.46498 * 109.46890 * 119.99923 * 2 1 3 21 21 C 1.36935 * 120.00239 * 275.00034 * 20 2 1 22 22 H 1.08004 * 120.00069 * 0.02562 * 21 20 2 23 23 C 1.38811 * 120.00368 * 180.02562 * 21 20 2 24 24 N 1.31624 * 119.99540 * 359.72375 * 23 21 20 25 25 Si 1.86800 * 120.00451 * 180.02562 * 23 21 20 26 26 H 1.48501 * 109.46758 * 269.72270 * 25 23 21 27 27 H 1.48499 * 109.47026 * 29.72118 * 25 23 21 28 28 H 1.48496 * 109.47474 * 149.72153 * 25 23 21 29 29 H 1.09005 * 109.47033 * 180.02562 * 1 2 3 30 30 H 1.08994 * 109.47214 * 299.99506 * 1 2 3 31 31 H 1.08994 * 109.47102 * 60.00064 * 1 2 3 32 32 H 1.08996 * 109.47554 * 295.00148 * 4 2 1 33 33 H 1.09001 * 109.46960 * 55.00369 * 4 2 1 34 34 H 1.09000 * 109.47086 * 180.02562 * 7 5 4 35 35 H 1.09007 * 109.47428 * 300.00139 * 7 5 4 36 36 H 1.09001 * 109.47632 * 60.00304 * 7 5 4 37 37 H 0.96997 * 120.00307 * 24.99985 * 8 5 4 38 38 H 1.07998 * 119.55818 * 0.02562 * 12 11 9 39 39 H 1.08003 * 119.56310 * 179.74615 * 14 13 12 40 40 H 0.97002 * 120.00197 * 359.97438 * 17 16 15 41 41 H 0.96996 * 120.00355 * 179.97438 * 17 16 15 42 42 H 1.07995 * 120.92119 * 359.95450 * 19 11 9 43 43 H 0.97004 * 119.99747 * 95.00774 * 20 2 1 44 44 H 0.97000 * 120.00481 * 0.27542 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5649 -0.6131 -1.3136 6 1 3.8571 0.4359 -1.2677 7 6 4.0645 -1.2248 -2.6240 8 7 4.1537 -1.3340 -0.1824 9 6 5.3747 -0.9909 0.2734 10 8 5.9876 -0.0837 -0.2544 11 6 5.9688 -1.7181 1.4155 12 6 5.2712 -2.7586 2.0334 13 7 5.7951 -3.4145 3.0486 14 6 6.9845 -3.1196 3.5324 15 6 7.7486 -2.0904 2.9785 16 6 9.0821 -1.7664 3.5287 17 7 9.5690 -2.4668 4.5721 18 8 9.7395 -0.8683 3.0399 19 6 7.2337 -1.3706 1.8967 20 7 2.0183 -0.6906 1.1962 21 6 2.1490 -0.0075 2.3758 22 1 1.8918 1.0403 2.4244 23 6 2.6122 -0.6617 3.5091 24 7 2.9205 -1.9400 3.4511 25 14 2.7899 0.2699 5.1184 26 1 4.1540 0.8503 5.2062 27 1 1.7835 1.3605 5.1727 28 1 2.5735 -0.6603 6.2554 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5137 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 1.7517 -1.7715 -1.2056 33 1 1.6054 -0.2617 -2.1369 34 1 5.1509 -1.1482 -2.6697 35 1 3.7724 -2.2740 -2.6699 36 1 3.6264 -0.6885 -3.4657 37 1 3.6648 -2.0583 0.2386 38 1 4.2910 -3.0315 1.6714 39 1 7.3738 -3.6811 4.3689 40 1 9.0443 -3.1833 4.9624 41 1 10.4440 -2.2546 4.9328 42 1 7.7983 -0.5686 1.4446 43 1 2.2490 -1.6318 1.1526 44 1 2.8279 -2.4240 2.6156 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001146409424.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:29:54 Heat of formation + Delta-G solvation = -22.767803 kcal Electronic energy + Delta-G solvation = -28136.977833 eV Core-core repulsion = 24282.793094 eV Total energy + Delta-G solvation = -3854.184739 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -40.49148 -39.37271 -38.32321 -36.95208 -34.47081 -33.87287 -32.79853 -32.18181 -31.40527 -30.07455 -28.37035 -26.47223 -24.74539 -24.07821 -23.57290 -21.72959 -20.86333 -20.45702 -19.76282 -18.28153 -17.61365 -17.09072 -16.71190 -16.41030 -15.92152 -15.18571 -14.99905 -14.83604 -14.44461 -14.29386 -14.10133 -13.64964 -13.39788 -13.24567 -13.16287 -12.83736 -12.77405 -12.28713 -12.15402 -12.07128 -11.81451 -11.69688 -11.19156 -10.82594 -10.58747 -10.49955 -10.40108 -10.21486 -10.08969 -9.76294 -9.65818 -9.57807 -9.28277 -9.12897 -8.98361 -8.83439 -8.53844 -7.11657 -6.19879 -3.17760 0.79530 1.30190 2.93003 3.36511 3.44676 3.47229 3.50118 3.62609 3.66378 4.26233 4.52080 4.56813 4.86722 4.94420 5.03212 5.19021 5.22475 5.29906 5.33106 5.47585 5.50938 5.54651 5.66697 5.74250 5.83423 5.87100 6.00078 6.09369 6.16980 6.25098 6.27531 6.36899 6.37720 6.44987 6.69695 6.71605 6.78416 6.90338 6.97475 7.26744 7.69791 7.93597 8.17949 8.26157 8.57803 8.67396 9.04228 9.88668 10.04536 11.22242 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.011537 B = 0.005491 C = 0.004191 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2426.430774 B = 5098.102309 C = 6679.517118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.173 3.827 3 H 0.051 0.949 4 C -0.135 4.135 5 C 0.150 3.850 6 H 0.086 0.914 7 C -0.163 4.163 8 N -0.696 5.696 9 C 0.576 3.424 10 O -0.551 6.551 11 C -0.199 4.199 12 C 0.209 3.791 13 N -0.468 5.468 14 C 0.155 3.845 15 C -0.225 4.225 16 C 0.576 3.424 17 N -0.852 5.852 18 O -0.542 6.542 19 C 0.042 3.958 20 N -0.727 5.727 21 C -0.306 4.306 22 H 0.064 0.936 23 C -0.047 4.047 24 N -0.921 5.921 25 Si 1.073 2.927 26 H -0.298 1.298 27 H -0.296 1.296 28 H -0.287 1.287 29 H 0.044 0.956 30 H 0.053 0.947 31 H 0.038 0.962 32 H 0.064 0.936 33 H 0.077 0.923 34 H 0.059 0.941 35 H 0.054 0.946 36 H 0.062 0.938 37 H 0.397 0.603 38 H 0.158 0.842 39 H 0.154 0.846 40 H 0.401 0.599 41 H 0.404 0.596 42 H 0.151 0.849 43 H 0.359 0.641 44 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.567 -5.198 -4.499 8.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.064 3.936 3 H 0.069 0.931 4 C -0.174 4.174 5 C 0.046 3.954 6 H 0.104 0.896 7 C -0.221 4.221 8 N -0.348 5.348 9 C 0.363 3.637 10 O -0.430 6.430 11 C -0.205 4.205 12 C 0.051 3.949 13 N -0.175 5.175 14 C -0.006 4.006 15 C -0.231 4.231 16 C 0.362 3.638 17 N -0.417 5.417 18 O -0.419 6.419 19 C 0.015 3.985 20 N -0.370 5.370 21 C -0.436 4.436 22 H 0.082 0.918 23 C -0.244 4.244 24 N -0.568 5.568 25 Si 0.905 3.095 26 H -0.226 1.226 27 H -0.223 1.223 28 H -0.213 1.213 29 H 0.063 0.937 30 H 0.072 0.928 31 H 0.057 0.943 32 H 0.082 0.918 33 H 0.096 0.904 34 H 0.078 0.922 35 H 0.073 0.927 36 H 0.081 0.919 37 H 0.234 0.766 38 H 0.175 0.825 39 H 0.171 0.829 40 H 0.231 0.769 41 H 0.235 0.765 42 H 0.169 0.831 43 H 0.193 0.807 44 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 5.094 -4.491 -3.331 7.564 hybrid contribution -0.352 0.112 -1.116 1.175 sum 4.742 -4.378 -4.447 7.838 Atomic orbital electron populations 1.22389 0.99003 1.00724 1.00160 1.20255 0.91776 0.95803 0.85782 0.93100 1.22242 0.93956 1.01598 0.99592 1.20853 0.92448 0.97432 0.84713 0.89578 1.22210 1.01963 1.00846 0.97088 1.45860 1.17542 1.37431 1.33921 1.17789 0.81256 0.82642 0.82015 1.90712 1.62052 1.30681 1.59571 1.20886 0.96969 1.01516 1.01090 1.22994 0.96303 0.87884 0.87745 1.67663 1.10353 1.29154 1.10331 1.23015 0.89584 0.91926 0.96043 1.20654 0.97317 1.02922 1.02232 1.18047 0.85378 0.81009 0.79392 1.43698 1.23265 1.39134 1.35561 1.90813 1.60110 1.30812 1.60196 1.21656 0.92389 0.94229 0.90233 1.42526 1.78782 1.09191 1.06529 1.20130 1.39577 0.95085 0.88818 0.91790 1.25565 1.00023 0.97658 1.01139 1.71126 1.50715 1.07627 1.27302 0.83285 0.75869 0.74324 0.76034 1.22564 1.22322 1.21341 0.93672 0.92771 0.94334 0.91771 0.90426 0.92220 0.92737 0.91910 0.76588 0.82517 0.82908 0.76945 0.76544 0.83134 0.80700 0.94019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.68 9.49 37.16 0.35 -2.33 16 2 C 0.17 3.09 2.89 -67.93 -0.20 2.89 16 3 H 0.05 1.00 8.08 -51.93 -0.42 0.58 16 4 C -0.14 -1.91 4.43 -26.73 -0.12 -2.02 16 5 C 0.15 2.31 2.57 -67.93 -0.17 2.14 16 6 H 0.09 1.52 7.58 -51.93 -0.39 1.13 16 7 C -0.16 -2.08 9.48 37.16 0.35 -1.73 16 8 N -0.70 -11.98 3.75 -54.75 -0.21 -12.19 16 9 C 0.58 11.43 7.74 -12.33 -0.10 11.34 16 10 O -0.55 -12.24 16.07 5.33 0.09 -12.16 16 11 C -0.20 -3.83 5.89 -104.87 -0.62 -4.44 16 12 C 0.21 3.92 9.01 -17.05 -0.15 3.77 16 13 N -0.47 -8.48 10.33 -12.57 -0.13 -8.61 16 14 C 0.16 2.36 10.71 -17.07 -0.18 2.18 16 15 C -0.23 -3.68 5.89 -104.87 -0.62 -4.29 16 16 C 0.58 8.71 8.05 -12.33 -0.10 8.61 16 17 N -0.85 -8.34 8.83 30.53 0.27 -8.07 16 18 O -0.54 -10.23 17.25 5.32 0.09 -10.13 16 19 C 0.04 0.78 9.25 -38.45 -0.36 0.43 16 20 N -0.73 -15.52 3.84 -53.43 -0.21 -15.73 16 21 C -0.31 -7.73 9.93 -15.06 -0.15 -7.88 16 22 H 0.06 1.69 7.83 -52.48 -0.41 1.28 16 23 C -0.05 -1.22 5.50 -17.43 -0.10 -1.31 16 24 N -0.92 -23.95 12.24 55.49 0.68 -23.27 16 25 Si 1.07 25.22 29.92 -169.99 -5.09 20.14 16 26 H -0.30 -7.13 7.11 56.52 0.40 -6.73 16 27 H -0.30 -6.73 7.11 56.52 0.40 -6.33 16 28 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 29 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 31 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.08 0.92 8.14 -51.93 -0.42 0.49 16 34 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.40 6.65 4.56 -40.82 -0.19 6.46 16 38 H 0.16 2.91 4.71 -52.49 -0.25 2.66 16 39 H 0.15 1.63 6.41 -52.48 -0.34 1.29 16 40 H 0.40 2.81 6.89 -40.82 -0.28 2.53 16 41 H 0.40 3.21 8.93 -40.82 -0.36 2.85 16 42 H 0.15 2.93 7.40 -52.49 -0.39 2.54 16 43 H 0.36 7.57 4.54 -40.82 -0.19 7.38 16 44 H 0.25 6.10 4.77 -40.82 -0.19 5.91 16 LS Contribution 361.20 15.07 5.44 5.44 Total: -1.00 -32.53 361.20 -6.79 -39.32 By element: Atomic # 1 Polarization: 23.51 SS G_CDS: -5.59 Total: 17.92 kcal Atomic # 6 Polarization: 9.49 SS G_CDS: -2.15 Total: 7.34 kcal Atomic # 7 Polarization: -68.28 SS G_CDS: 0.41 Total: -67.87 kcal Atomic # 8 Polarization: -22.47 SS G_CDS: 0.18 Total: -22.29 kcal Atomic # 14 Polarization: 25.22 SS G_CDS: -5.09 Total: 20.14 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -32.53 -6.79 -39.32 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001146409424.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.556 kcal (2) G-P(sol) polarization free energy of solvation -32.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.323 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds