Wall clock time and date at job start Tue Mar 31 2020 14:00:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.45204 * 109.47022 * 2 1 4 4 C 1.34223 * 116.99860 * 179.97438 * 3 2 1 5 5 O 1.20824 * 120.00256 * 359.97438 * 4 3 2 6 6 C 1.50697 * 119.99905 * 179.97438 * 4 3 2 7 7 H 1.09005 * 109.50736 * 300.07747 * 6 4 3 8 8 C 1.53123 * 109.50334 * 179.97438 * 6 4 3 9 9 C 1.53129 * 109.15746 * 182.40474 * 8 6 4 10 10 C 1.53031 * 109.27981 * 57.65380 * 9 8 6 11 11 N 1.46847 * 109.52515 * 300.82247 * 10 9 8 12 12 C 1.39190 * 110.99788 * 185.84196 * 11 10 9 13 13 C 1.39632 * 120.07278 * 56.02397 * 12 11 10 14 14 C 1.38306 * 117.98155 * 180.02562 * 13 12 11 15 15 C 1.39718 * 117.97058 * 359.97438 * 14 13 12 16 16 N 1.39028 * 120.08112 * 180.02562 * 15 14 13 17 17 C 1.36877 * 120.00151 * 359.97438 * 16 15 14 18 18 H 1.08007 * 119.99892 * 0.02562 * 17 16 15 19 19 C 1.38778 * 120.00329 * 180.02562 * 17 16 15 20 20 N 1.31594 * 120.00064 * 180.02562 * 19 17 16 21 21 Si 1.86795 * 119.99768 * 359.97438 * 19 17 16 22 22 H 1.48504 * 109.46916 * 90.00537 * 21 19 17 23 23 H 1.48504 * 109.46980 * 210.00026 * 21 19 17 24 24 H 1.48499 * 109.47395 * 329.99975 * 21 19 17 25 25 N 1.32408 * 119.84047 * 0.02562 * 15 14 13 26 26 N 1.28354 * 122.16196 * 359.97438 * 25 15 14 27 27 C 1.46846 * 111.20220 * 61.73959 * 11 10 9 28 28 H 1.08996 * 109.47100 * 60.00305 * 1 2 3 29 29 H 1.09002 * 109.46976 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47449 * 300.00234 * 1 2 3 31 31 H 1.08998 * 109.47449 * 239.99765 * 2 1 3 32 32 H 1.08999 * 109.46831 * 119.99238 * 2 1 3 33 33 H 1.08994 * 109.52070 * 62.50389 * 8 6 4 34 34 H 1.08993 * 109.52252 * 302.30461 * 8 6 4 35 35 H 1.08998 * 109.50290 * 297.71190 * 9 8 6 36 36 H 1.09004 * 109.49747 * 177.59282 * 9 8 6 37 37 H 1.09000 * 109.46385 * 180.79799 * 10 9 8 38 38 H 1.09007 * 109.46037 * 60.83416 * 10 9 8 39 39 H 1.08001 * 121.00687 * 0.03552 * 13 12 11 40 40 H 1.07998 * 121.01008 * 180.02562 * 14 13 12 41 41 H 0.97002 * 119.99557 * 179.97438 * 16 15 14 42 42 H 0.96996 * 119.99978 * 179.97438 * 20 19 17 43 43 H 1.09001 * 109.46069 * 58.27682 * 27 11 10 44 44 H 1.08996 * 109.46287 * 178.24635 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5449 0.0005 5 8 4.0807 0.5867 0.0015 6 6 3.9206 2.9374 0.0000 7 1 3.5843 3.4701 -0.8896 8 6 5.4498 2.8581 0.0014 9 6 6.0264 4.2755 0.0615 10 6 5.4970 4.9838 1.3105 11 7 4.0302 5.0345 1.2613 12 6 3.5215 5.7867 2.3161 13 6 3.9410 7.1056 2.5011 14 6 3.4081 7.8132 3.5633 15 6 2.4827 7.1641 4.3846 16 7 1.9190 7.8342 5.4645 17 6 2.2709 9.1312 5.7245 18 1 2.9861 9.6342 5.0905 19 6 1.7086 9.7999 6.8027 20 7 2.0465 11.0470 7.0523 21 14 0.4711 8.9303 7.8989 22 1 1.1852 8.2521 9.0104 23 1 -0.4812 9.9243 8.4558 24 1 -0.2743 7.9231 7.1019 25 7 2.1439 5.9093 4.1320 26 7 2.6388 5.2532 3.1461 27 6 3.4522 3.6846 1.2508 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8899 31 1 1.8934 -0.5138 -0.8899 32 1 1.8933 -0.5137 0.8901 33 1 5.7898 2.3649 -0.9092 34 1 5.7843 2.2917 0.8704 35 1 5.7236 4.8295 -0.8269 36 1 7.1143 4.2241 0.1060 37 1 5.8944 5.9980 1.3488 38 1 5.8118 4.4367 2.1992 39 1 4.6597 7.5595 1.8349 40 1 3.6978 8.8364 3.7516 41 1 1.2764 7.3825 6.0337 42 1 1.6533 11.5145 7.8057 43 1 3.7766 3.1437 2.1398 44 1 2.3645 3.7553 1.2456 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001155535005.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:00:46 Heat of formation + Delta-G solvation = -16.761264 kcal Electronic energy + Delta-G solvation = -26631.137341 eV Core-core repulsion = 22777.213065 eV Total energy + Delta-G solvation = -3853.924276 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.92560 -40.17843 -38.52210 -36.79393 -35.87609 -33.78826 -32.47688 -32.12189 -31.66137 -31.00755 -28.84788 -25.41726 -25.18477 -24.18630 -23.28486 -22.73505 -21.80528 -20.92467 -19.79920 -18.65838 -17.86593 -17.18155 -16.83989 -16.78166 -16.24291 -15.82133 -14.99910 -14.78789 -14.73143 -14.59426 -13.96213 -13.73985 -13.59872 -13.53574 -13.26997 -13.06644 -12.93235 -12.63439 -12.46640 -12.34808 -12.12444 -11.79467 -11.75479 -11.55998 -11.11315 -10.93128 -10.89528 -10.79509 -10.68183 -10.59585 -10.57660 -10.32839 -10.22707 -9.68798 -9.26387 -8.79383 -8.40334 -7.23096 -6.68307 -4.00374 1.79397 2.02399 2.06720 2.51573 2.97348 2.99932 3.03571 3.78685 3.87634 4.34298 4.36994 4.51214 4.56259 4.70656 4.75503 4.77562 4.90756 4.97947 5.02292 5.04432 5.20663 5.36496 5.41219 5.44993 5.47020 5.55349 5.56448 5.66397 5.72514 5.78400 5.81296 5.86121 5.89106 5.96158 6.12189 6.17290 6.31924 6.39039 6.53515 6.82451 7.13572 7.33558 7.50162 7.62999 7.69200 8.31953 8.93764 8.98677 9.88388 10.41511 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.016854 B = 0.002844 C = 0.002487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1660.956928 B = 9842.932628 C =11256.397791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.061 3.939 3 O -0.352 6.352 4 C 0.473 3.527 5 O -0.512 6.512 6 C -0.081 4.081 7 H 0.117 0.883 8 C -0.105 4.105 9 C -0.114 4.114 10 C 0.052 3.948 11 N -0.457 5.457 12 C 0.125 3.875 13 C -0.084 4.084 14 C -0.163 4.163 15 C 0.296 3.704 16 N -0.549 5.549 17 C -0.309 4.309 18 H 0.121 0.879 19 C 0.048 3.952 20 N -0.865 5.865 21 Si 0.883 3.117 22 H -0.266 1.266 23 H -0.272 1.272 24 H -0.262 1.262 25 N -0.339 5.339 26 N -0.230 5.230 27 C 0.079 3.921 28 H 0.066 0.934 29 H 0.078 0.922 30 H 0.070 0.930 31 H 0.067 0.933 32 H 0.069 0.931 33 H 0.073 0.927 34 H 0.071 0.929 35 H 0.076 0.924 36 H 0.076 0.924 37 H 0.083 0.917 38 H 0.040 0.960 39 H 0.132 0.868 40 H 0.144 0.856 41 H 0.387 0.613 42 H 0.280 0.720 43 H 0.049 0.951 44 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.313 -14.634 -13.736 20.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.012 4.012 3 O -0.269 6.269 4 C 0.315 3.685 5 O -0.399 6.399 6 C -0.100 4.100 7 H 0.135 0.865 8 C -0.143 4.143 9 C -0.152 4.152 10 C -0.076 4.076 11 N -0.179 5.179 12 C -0.119 4.119 13 C -0.114 4.114 14 C -0.198 4.198 15 C 0.049 3.951 16 N -0.161 5.161 17 C -0.439 4.439 18 H 0.138 0.862 19 C -0.159 4.159 20 N -0.500 5.500 21 Si 0.708 3.292 22 H -0.191 1.191 23 H -0.197 1.197 24 H -0.187 1.187 25 N -0.197 5.197 26 N -0.077 5.077 27 C -0.049 4.049 28 H 0.085 0.915 29 H 0.096 0.904 30 H 0.089 0.911 31 H 0.086 0.914 32 H 0.088 0.912 33 H 0.091 0.909 34 H 0.089 0.911 35 H 0.094 0.906 36 H 0.094 0.906 37 H 0.102 0.898 38 H 0.059 0.941 39 H 0.150 0.850 40 H 0.162 0.838 41 H 0.222 0.778 42 H 0.091 0.909 43 H 0.067 0.933 44 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 2.464 -15.501 -13.437 20.662 hybrid contribution 0.185 0.399 1.109 1.193 sum 2.650 -15.102 -12.328 19.674 Atomic orbital electron populations 1.21812 0.92541 1.02856 1.03866 1.23025 0.95529 0.80286 1.02401 1.86558 1.24459 1.32235 1.83617 1.23681 0.80559 0.92489 0.71742 1.90643 1.60536 1.43142 1.45614 1.21210 0.96668 0.89345 1.02779 0.86478 1.21519 0.91742 0.97561 1.03494 1.21607 1.00070 0.94917 0.98601 1.22314 0.86376 1.01466 0.97412 1.59267 1.06003 1.13255 1.39335 1.20520 1.02984 0.93157 0.95216 1.21438 0.99777 0.92915 0.97256 1.21638 0.99902 1.01983 0.96304 1.19716 0.93762 0.91179 0.90425 1.40905 1.39188 1.11936 1.24058 1.19402 1.25335 0.85848 1.13293 0.86187 1.24993 0.97948 0.95688 0.97291 1.69672 1.41881 1.09472 1.28963 0.86557 0.81384 0.79972 0.81284 1.19116 1.19701 1.18741 1.72596 1.26749 1.05974 1.14410 1.72537 1.08134 1.28412 0.98568 1.21767 1.01532 0.87483 0.94092 0.91451 0.90361 0.91112 0.91414 0.91236 0.90857 0.91072 0.90552 0.90567 0.89838 0.94119 0.85027 0.83820 0.77775 0.90905 0.93310 0.88326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.14 10.29 37.16 0.38 -0.76 16 2 C 0.06 0.59 6.19 37.16 0.23 0.82 16 3 O -0.35 -4.27 10.15 -39.24 -0.40 -4.67 16 4 C 0.47 5.96 7.26 36.00 0.26 6.22 16 5 O -0.51 -7.39 15.72 -18.75 -0.29 -7.69 16 6 C -0.08 -0.91 2.79 -91.69 -0.26 -1.17 16 7 H 0.12 1.18 8.14 -51.93 -0.42 0.75 16 8 C -0.11 -1.07 4.59 -26.60 -0.12 -1.19 16 9 C -0.11 -1.03 6.09 -26.65 -0.16 -1.20 16 10 C 0.05 0.61 5.26 -3.84 -0.02 0.59 16 11 N -0.46 -6.61 4.69 -173.01 -0.81 -7.42 16 12 C 0.13 2.25 6.48 -154.66 -1.00 1.25 16 13 C -0.08 -1.46 9.28 -39.04 -0.36 -1.82 16 14 C -0.16 -3.26 9.41 -39.00 -0.37 -3.62 16 15 C 0.30 6.62 7.71 -154.77 -1.19 5.42 16 16 N -0.55 -12.75 5.25 -11.02 -0.06 -12.80 16 17 C -0.31 -7.68 10.04 -15.10 -0.15 -7.83 16 18 H 0.12 3.07 5.94 -52.48 -0.31 2.76 16 19 C 0.05 1.19 5.50 -17.45 -0.10 1.10 16 20 N -0.86 -22.82 13.97 55.49 0.77 -22.05 16 21 Si 0.88 18.74 27.73 -169.99 -4.71 14.03 16 22 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 23 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 24 H -0.26 -5.40 6.52 56.52 0.37 -5.03 16 25 N -0.34 -7.63 11.53 31.26 0.36 -7.27 16 26 N -0.23 -4.74 9.87 31.28 0.31 -4.43 16 27 C 0.08 1.10 3.88 -3.83 -0.01 1.09 16 28 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.07 0.60 8.13 -51.93 -0.42 0.18 16 32 H 0.07 0.67 8.13 -51.93 -0.42 0.25 16 33 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.07 0.79 8.04 -51.93 -0.42 0.38 16 35 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 37 H 0.08 0.91 6.74 -51.93 -0.35 0.56 16 38 H 0.04 0.52 8.14 -51.93 -0.42 0.09 16 39 H 0.13 1.83 7.23 -52.49 -0.38 1.45 16 40 H 0.14 2.80 6.05 -52.49 -0.32 2.48 16 41 H 0.39 8.70 5.88 -40.82 -0.24 8.46 16 42 H 0.28 6.88 8.31 -40.82 -0.34 6.54 16 43 H 0.05 0.74 8.12 -51.93 -0.42 0.32 16 44 H 0.10 1.52 7.72 -51.93 -0.40 1.12 16 LS Contribution 359.80 15.07 5.42 5.42 Total: -1.00 -28.83 359.80 -8.52 -37.34 By element: Atomic # 1 Polarization: 16.86 SS G_CDS: -6.23 Total: 10.63 kcal Atomic # 6 Polarization: 1.77 SS G_CDS: -2.87 Total: -1.10 kcal Atomic # 7 Polarization: -54.54 SS G_CDS: 0.57 Total: -53.96 kcal Atomic # 8 Polarization: -11.66 SS G_CDS: -0.69 Total: -12.36 kcal Atomic # 14 Polarization: 18.74 SS G_CDS: -4.71 Total: 14.03 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -28.83 -8.52 -37.34 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001155535005.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.582 kcal (2) G-P(sol) polarization free energy of solvation -28.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.343 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds