Wall clock time and date at job start Tue Mar 31 2020 14:00:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.45194 * 109.47339 * 2 1 4 4 C 1.34235 * 117.00385 * 179.97438 * 3 2 1 5 5 O 1.20824 * 119.99671 * 0.02562 * 4 3 2 6 6 C 1.50693 * 120.00281 * 180.02562 * 4 3 2 7 7 H 1.09006 * 109.50308 * 60.07905 * 6 4 3 8 8 C 1.53117 * 109.50222 * 180.19529 * 6 4 3 9 9 C 1.53121 * 109.16250 * 177.59449 * 8 6 4 10 10 C 1.53046 * 109.27798 * 302.35205 * 9 8 6 11 11 N 1.46846 * 109.52317 * 59.17443 * 10 9 8 12 12 C 1.39193 * 110.99603 * 174.16388 * 11 10 9 13 13 C 1.39634 * 120.06496 * 303.93615 * 12 11 10 14 14 C 1.38309 * 117.97825 * 179.74023 * 13 12 11 15 15 C 1.39732 * 117.96844 * 0.52424 * 14 13 12 16 16 N 1.39022 * 120.07916 * 179.70764 * 15 14 13 17 17 C 1.36882 * 119.99980 * 0.02562 * 16 15 14 18 18 H 1.07993 * 120.00352 * 0.02562 * 17 16 15 19 19 C 1.38781 * 119.99796 * 180.02562 * 17 16 15 20 20 N 1.31602 * 119.99879 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 120.00036 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.47124 * 0.02562 * 21 19 17 23 23 H 1.48504 * 109.46790 * 120.00126 * 21 19 17 24 24 H 1.48497 * 109.47049 * 239.99996 * 21 19 17 25 25 N 1.32404 * 119.83670 * 359.72864 * 15 14 13 26 26 N 1.28355 * 122.16523 * 359.97438 * 25 15 14 27 27 C 1.46847 * 111.19780 * 298.25858 * 11 10 9 28 28 H 1.09002 * 109.47153 * 59.99705 * 1 2 3 29 29 H 1.09001 * 109.46832 * 299.99896 * 1 2 3 30 30 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47153 * 120.00295 * 2 1 3 32 32 H 1.08998 * 109.47533 * 239.99925 * 2 1 3 33 33 H 1.08998 * 109.52606 * 297.50186 * 8 6 4 34 34 H 1.09002 * 109.52491 * 57.69525 * 8 6 4 35 35 H 1.08994 * 109.50744 * 182.40894 * 9 8 6 36 36 H 1.09002 * 109.53212 * 62.30518 * 9 8 6 37 37 H 1.09002 * 109.45808 * 299.15832 * 10 9 8 38 38 H 1.08999 * 109.45842 * 179.19434 * 10 9 8 39 39 H 1.07997 * 121.01549 * 359.97344 * 13 12 11 40 40 H 1.07999 * 121.01855 * 180.24953 * 14 13 12 41 41 H 0.97005 * 119.99827 * 180.02562 * 16 15 14 42 42 H 0.97003 * 119.99750 * 179.97438 * 20 19 17 43 43 H 1.09000 * 109.46554 * 301.72811 * 27 11 10 44 44 H 1.09000 * 109.45126 * 181.75260 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3448 1.5448 0.0005 5 8 4.0808 0.5866 0.0005 6 6 3.9208 2.9373 0.0012 7 1 3.5860 3.4692 0.8918 8 6 5.4499 2.8580 -0.0032 9 6 6.0266 4.2752 -0.0633 10 6 5.4947 4.9847 -1.3107 11 7 4.0280 5.0354 -1.2585 12 6 3.5173 5.7885 -2.3118 13 6 3.9360 7.1078 -2.4960 14 6 3.4048 7.8147 -3.5596 15 6 2.4739 7.1680 -4.3766 16 7 1.9076 7.8393 -5.4543 17 6 2.2622 9.1351 -5.7163 18 1 2.9822 9.6360 -5.0862 19 6 1.6965 9.8054 -6.7918 20 7 0.8187 9.1953 -7.5594 21 14 2.1809 11.5736 -7.1499 22 1 3.1784 12.0263 -6.1473 23 1 2.7724 11.6591 -8.5094 24 1 0.9776 12.4407 -7.0782 25 7 2.1321 5.9145 -4.1217 26 7 2.6298 5.2571 -3.1380 27 6 3.4500 3.6855 -1.2480 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 1.8933 -0.5139 0.8900 32 1 1.8934 -0.5138 -0.8899 33 1 5.7917 2.3639 0.9062 34 1 5.7828 2.2922 -0.8734 35 1 7.1143 4.2239 -0.1098 36 1 5.7260 4.8289 0.8262 37 1 5.8078 4.4384 -2.2004 38 1 5.8921 5.9989 -1.3488 39 1 4.6557 7.5613 -1.8306 40 1 3.6972 8.8367 -3.7500 41 1 1.2611 7.3893 -6.0205 42 1 0.4230 9.6639 -8.3109 43 1 3.7727 3.1453 -2.1381 44 1 2.3624 3.7564 -1.2406 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001155535006.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:00:50 Heat of formation + Delta-G solvation = -22.673810 kcal Electronic energy + Delta-G solvation = -26584.758323 eV Core-core repulsion = 22730.577660 eV Total energy + Delta-G solvation = -3854.180663 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.86980 -40.06227 -38.42832 -36.74179 -35.74670 -33.72936 -32.40497 -32.05615 -31.42006 -30.93955 -28.51365 -25.44212 -25.14617 -24.23621 -23.27397 -22.60424 -21.84165 -20.91234 -19.74597 -18.18277 -17.80416 -17.18727 -16.87343 -16.70447 -16.08755 -15.73203 -14.92066 -14.75002 -14.63411 -14.52360 -13.88629 -13.80618 -13.64817 -13.44403 -13.31377 -13.03952 -12.88852 -12.59042 -12.39767 -12.08178 -11.82233 -11.74850 -11.62328 -11.50582 -11.07807 -10.89462 -10.79316 -10.74689 -10.64106 -10.61139 -10.51287 -10.40097 -10.22405 -9.61060 -9.21272 -8.68818 -8.27389 -7.08412 -6.77641 -3.98686 1.90072 2.10382 2.15385 2.55959 3.02964 3.05200 3.09349 3.81627 3.91875 4.42365 4.54619 4.60749 4.71629 4.75772 4.80467 4.82806 4.95830 5.03332 5.07588 5.09232 5.25777 5.43419 5.48341 5.51819 5.53286 5.60371 5.61795 5.71132 5.79526 5.82978 5.85728 5.91082 5.99590 6.05985 6.18903 6.21624 6.36167 6.48767 6.66867 6.92214 7.06319 7.29245 7.50975 7.66629 7.72292 8.51288 9.02689 9.22676 10.04134 10.38132 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.018997 B = 0.002668 C = 0.002384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1473.591671 B =10490.916028 C =11743.902451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.061 3.939 3 O -0.352 6.352 4 C 0.473 3.527 5 O -0.512 6.512 6 C -0.080 4.080 7 H 0.117 0.883 8 C -0.105 4.105 9 C -0.114 4.114 10 C 0.052 3.948 11 N -0.456 5.456 12 C 0.113 3.887 13 C -0.082 4.082 14 C -0.176 4.176 15 C 0.287 3.713 16 N -0.517 5.517 17 C -0.307 4.307 18 H 0.105 0.895 19 C 0.027 3.973 20 N -0.876 5.876 21 Si 0.938 3.062 22 H -0.266 1.266 23 H -0.277 1.277 24 H -0.277 1.277 25 N -0.338 5.338 26 N -0.226 5.226 27 C 0.079 3.921 28 H 0.070 0.930 29 H 0.066 0.934 30 H 0.078 0.922 31 H 0.067 0.933 32 H 0.069 0.931 33 H 0.072 0.928 34 H 0.070 0.930 35 H 0.075 0.925 36 H 0.075 0.925 37 H 0.039 0.961 38 H 0.082 0.918 39 H 0.128 0.872 40 H 0.138 0.862 41 H 0.408 0.592 42 H 0.279 0.721 43 H 0.048 0.952 44 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.875 -9.883 14.370 18.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.012 4.012 3 O -0.268 6.268 4 C 0.316 3.684 5 O -0.400 6.400 6 C -0.100 4.100 7 H 0.135 0.865 8 C -0.143 4.143 9 C -0.152 4.152 10 C -0.076 4.076 11 N -0.178 5.178 12 C -0.131 4.131 13 C -0.111 4.111 14 C -0.211 4.211 15 C 0.038 3.962 16 N -0.125 5.125 17 C -0.438 4.438 18 H 0.123 0.877 19 C -0.179 4.179 20 N -0.512 5.512 21 Si 0.763 3.237 22 H -0.190 1.190 23 H -0.203 1.203 24 H -0.202 1.202 25 N -0.198 5.198 26 N -0.073 5.073 27 C -0.049 4.049 28 H 0.089 0.911 29 H 0.085 0.915 30 H 0.096 0.904 31 H 0.086 0.914 32 H 0.088 0.912 33 H 0.091 0.909 34 H 0.089 0.911 35 H 0.093 0.907 36 H 0.094 0.906 37 H 0.058 0.942 38 H 0.100 0.900 39 H 0.146 0.854 40 H 0.155 0.845 41 H 0.244 0.756 42 H 0.089 0.911 43 H 0.066 0.934 44 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 4.906 -10.898 14.012 18.417 hybrid contribution 0.935 1.433 -0.770 1.876 sum 5.840 -9.466 13.243 17.294 Atomic orbital electron populations 1.21813 0.92537 1.02843 1.03887 1.23021 0.95538 0.80303 1.02377 1.86561 1.24456 1.32216 1.83609 1.23691 0.80556 0.92495 0.71706 1.90640 1.60548 1.43151 1.45664 1.21208 0.96617 0.89331 1.02838 0.86519 1.21512 0.91790 0.97540 1.03441 1.21604 0.99980 0.94938 0.98657 1.22306 0.86679 1.01297 0.97289 1.59299 1.05748 1.13108 1.39632 1.20442 1.03694 0.93169 0.95834 1.21372 0.99656 0.92998 0.97088 1.21520 1.00876 1.01743 0.97004 1.19874 0.93961 0.91338 0.90987 1.40717 1.37586 1.11399 1.22828 1.19780 1.24162 0.87397 1.12417 0.87688 1.25393 0.95942 1.00994 0.95605 1.69720 1.26447 1.38181 1.16831 0.85676 0.78687 0.80528 0.78765 1.18983 1.20280 1.20243 1.72627 1.26851 1.06054 1.14228 1.72520 1.07697 1.28564 0.98542 1.21757 1.01535 0.87564 0.93997 0.91071 0.91465 0.90372 0.91449 0.91237 0.90911 0.91092 0.90670 0.90614 0.94223 0.89986 0.85371 0.84465 0.75602 0.91067 0.93378 0.88335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.20 10.29 37.16 0.38 -0.82 16 2 C 0.06 0.61 6.19 37.16 0.23 0.84 16 3 O -0.35 -4.43 10.14 -39.27 -0.40 -4.83 16 4 C 0.47 6.17 7.26 36.00 0.26 6.43 16 5 O -0.51 -7.61 15.73 -18.75 -0.29 -7.90 16 6 C -0.08 -0.95 2.79 -91.70 -0.26 -1.20 16 7 H 0.12 1.23 8.14 -51.93 -0.42 0.80 16 8 C -0.11 -1.11 4.58 -26.61 -0.12 -1.23 16 9 C -0.11 -1.08 6.09 -26.65 -0.16 -1.24 16 10 C 0.05 0.64 5.26 -3.83 -0.02 0.62 16 11 N -0.46 -6.87 4.69 -173.01 -0.81 -7.68 16 12 C 0.11 2.10 6.48 -154.66 -1.00 1.10 16 13 C -0.08 -1.45 9.28 -39.03 -0.36 -1.81 16 14 C -0.18 -3.56 9.41 -39.00 -0.37 -3.93 16 15 C 0.29 6.67 7.71 -154.77 -1.19 5.47 16 16 N -0.52 -12.76 5.45 -11.02 -0.06 -12.82 16 17 C -0.31 -7.48 9.55 -15.10 -0.14 -7.62 16 18 H 0.11 2.38 5.70 -52.49 -0.30 2.08 16 19 C 0.03 0.65 5.50 -17.45 -0.10 0.55 16 20 N -0.88 -22.58 13.05 55.49 0.72 -21.85 16 21 Si 0.94 18.64 29.55 -169.99 -5.02 13.62 16 22 H -0.27 -5.07 7.11 56.52 0.40 -4.67 16 23 H -0.28 -5.52 7.11 56.52 0.40 -5.12 16 24 H -0.28 -5.51 7.11 56.52 0.40 -5.11 16 25 N -0.34 -8.00 11.53 31.26 0.36 -7.64 16 26 N -0.23 -4.87 9.87 31.28 0.31 -4.56 16 27 C 0.08 1.16 3.88 -3.84 -0.01 1.14 16 28 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 30 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.07 0.62 8.13 -51.93 -0.42 0.20 16 32 H 0.07 0.70 8.13 -51.93 -0.42 0.28 16 33 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.07 0.82 8.05 -51.93 -0.42 0.40 16 35 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.04 0.53 8.14 -51.93 -0.42 0.10 16 38 H 0.08 0.93 6.74 -51.93 -0.35 0.58 16 39 H 0.13 1.83 7.23 -52.49 -0.38 1.45 16 40 H 0.14 2.60 6.04 -52.49 -0.32 2.28 16 41 H 0.41 10.51 8.01 -40.82 -0.33 10.18 16 42 H 0.28 6.72 8.31 -40.82 -0.34 6.38 16 43 H 0.05 0.77 8.12 -51.93 -0.42 0.35 16 44 H 0.10 1.59 7.71 -51.93 -0.40 1.19 16 LS Contribution 362.92 15.07 5.47 5.47 Total: -1.00 -28.66 362.92 -8.87 -37.53 By element: Atomic # 1 Polarization: 18.64 SS G_CDS: -6.27 Total: 12.37 kcal Atomic # 6 Polarization: 1.16 SS G_CDS: -2.87 Total: -1.70 kcal Atomic # 7 Polarization: -55.08 SS G_CDS: 0.52 Total: -54.55 kcal Atomic # 8 Polarization: -12.04 SS G_CDS: -0.69 Total: -12.73 kcal Atomic # 14 Polarization: 18.64 SS G_CDS: -5.02 Total: 13.62 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -28.66 -8.87 -37.53 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001155535006.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.857 kcal (2) G-P(sol) polarization free energy of solvation -28.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.531 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds