Wall clock time and date at job start Tue Mar 31 2020 13:46:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46501 * 109.46754 * 2 1 4 4 C 1.36939 * 120.00158 * 84.27602 * 3 2 1 5 5 H 1.08003 * 119.99383 * 28.83168 * 4 3 2 6 6 C 1.38808 * 120.00135 * 209.10556 * 4 3 2 7 7 N 1.31616 * 119.99840 * 18.63904 * 6 4 3 8 8 Si 1.86798 * 119.99944 * 198.62769 * 6 4 3 9 9 H 1.48502 * 109.47289 * 0.02562 * 8 6 4 10 10 H 1.48503 * 109.46773 * 120.00384 * 8 6 4 11 11 H 1.48492 * 109.47434 * 240.00233 * 8 6 4 12 12 C 1.46499 * 120.00241 * 264.27013 * 3 2 1 13 13 H 1.08997 * 109.47481 * 183.53925 * 12 3 2 14 14 C 1.53001 * 109.46852 * 63.53975 * 12 3 2 15 15 C 1.52996 * 109.47057 * 303.54275 * 12 3 2 16 16 N 1.46497 * 109.47402 * 304.99358 * 15 12 3 17 17 C 1.34777 * 120.00481 * 180.02562 * 16 15 12 18 18 O 1.21547 * 119.99586 * 359.97438 * 17 16 15 19 19 C 1.47850 * 120.00096 * 180.02562 * 17 16 15 20 20 C 1.39679 * 120.49213 * 359.71473 * 19 17 16 21 21 N 1.31731 * 120.88027 * 179.75164 * 20 19 17 22 22 C 1.31759 * 122.03854 * 0.54296 * 21 20 19 23 23 C 1.39631 * 120.88648 * 359.72704 * 22 21 20 24 24 C 1.47854 * 120.49151 * 179.97438 * 23 22 21 25 25 N 1.34772 * 120.00268 * 0.02562 * 24 23 22 26 26 O 1.21551 * 119.99867 * 180.02562 * 24 23 22 27 27 C 1.39724 * 120.49148 * 180.02562 * 19 17 16 28 28 H 1.08994 * 109.47115 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47134 * 299.99881 * 1 2 3 30 30 H 1.09002 * 109.47262 * 59.99976 * 1 2 3 31 31 H 1.09001 * 109.46845 * 240.00506 * 2 1 3 32 32 H 1.08992 * 109.47243 * 120.00131 * 2 1 3 33 33 H 0.97001 * 119.99542 * 180.02562 * 7 6 4 34 34 H 1.09007 * 109.47518 * 300.00030 * 14 12 3 35 35 H 1.09005 * 109.47506 * 60.00067 * 14 12 3 36 36 H 1.09000 * 109.47603 * 180.02562 * 14 12 3 37 37 H 1.09004 * 109.47417 * 65.00136 * 15 12 3 38 38 H 1.09002 * 109.47155 * 184.99591 * 15 12 3 39 39 H 0.97004 * 119.99826 * 0.02562 * 16 15 12 40 40 H 1.08003 * 119.55828 * 0.02630 * 20 19 17 41 41 H 1.08005 * 119.55506 * 179.70314 * 22 21 20 42 42 H 0.97002 * 119.99594 * 359.97438 * 25 24 23 43 43 H 0.96994 * 120.00253 * 180.02562 * 25 24 23 44 44 H 1.08002 * 120.92225 * 359.94304 * 27 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1350 2.0663 1.1800 5 1 2.3291 1.5313 2.0979 6 6 1.9981 3.4475 1.1972 7 7 1.4073 4.0627 0.1948 8 14 2.6520 4.4329 2.6431 9 1 3.2683 3.5119 3.6317 10 1 3.6733 5.3981 2.1628 11 1 1.5350 5.1721 3.2840 12 6 2.3819 2.0297 -1.2623 13 1 2.7793 3.0240 -1.0588 14 6 1.1416 2.1482 -2.1505 15 6 3.4437 1.1927 -1.9783 16 7 4.5829 0.9788 -1.0824 17 6 5.6455 0.2639 -1.5021 18 8 5.6584 -0.2039 -2.6239 19 6 6.7949 0.0476 -0.5976 20 6 6.7929 0.5845 0.6919 21 7 7.8108 0.3925 1.5058 22 6 8.8733 -0.2982 1.1453 23 6 8.9614 -0.8658 -0.1274 24 6 10.1582 -1.6387 -0.5230 25 7 11.1742 -1.8002 0.3476 26 8 10.2257 -2.1285 -1.6334 27 6 7.9020 -0.6915 -1.0223 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 1.8933 -0.5138 -0.8901 32 1 1.8934 -0.5138 0.8899 33 1 1.3120 5.0280 0.2067 34 1 0.7441 1.1538 -2.3541 35 1 0.3850 2.7445 -1.6404 36 1 1.4121 2.6302 -3.0899 37 1 3.0179 0.2299 -2.2609 38 1 3.7786 1.7183 -2.8726 39 1 4.5724 1.3518 -0.1870 40 1 5.9436 1.1611 1.0276 41 1 9.6872 -0.4268 1.8435 42 1 11.1205 -1.4090 1.2336 43 1 11.9595 -2.3069 0.0880 44 1 7.9378 -1.1171 -2.0142 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001156949784.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:46:15 Heat of formation + Delta-G solvation = -18.015767 kcal Electronic energy + Delta-G solvation = -27160.878665 eV Core-core repulsion = 23306.899990 eV Total energy + Delta-G solvation = -3853.978675 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 1.93 seconds Orbital eigenvalues (eV) -40.98890 -39.50766 -38.62066 -36.96722 -34.28163 -33.97511 -32.76131 -32.00022 -31.75937 -30.57662 -28.36748 -26.08530 -25.13535 -24.12535 -23.54870 -21.84029 -21.65910 -20.09044 -19.44463 -18.60112 -17.56073 -17.21991 -16.96664 -16.71371 -15.93815 -15.35487 -15.11060 -14.97035 -14.78838 -14.42731 -14.26917 -13.71377 -13.62710 -13.38902 -13.25789 -12.83844 -12.72468 -12.42403 -11.97258 -11.64255 -11.46776 -11.34865 -11.07987 -10.87205 -10.82829 -10.54334 -10.31790 -10.17690 -10.12021 -10.03143 -9.93897 -9.63589 -9.55335 -9.51401 -9.51323 -8.61667 -8.52705 -6.80156 -5.92659 -3.36621 0.20032 0.72455 2.43070 3.00582 3.05896 3.28162 3.39037 3.39275 3.48648 3.74374 3.92214 4.37840 4.39319 4.44383 4.63328 4.83440 4.97891 5.14028 5.23339 5.32651 5.66720 5.81407 5.86470 6.05283 6.10072 6.14935 6.27747 6.36203 6.40415 6.45676 6.51415 6.66112 6.66894 6.74940 6.87133 6.91234 6.96003 7.23461 7.46303 7.48537 7.56413 7.73443 7.83736 7.93420 8.34641 8.49598 9.10487 9.72823 10.27422 11.14310 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.014939 B = 0.003596 C = 0.003154 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1873.900115 B = 7785.550424 C = 8875.313491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.141 3.859 3 N -0.584 5.584 4 C -0.262 4.262 5 H 0.068 0.932 6 C 0.009 3.991 7 N -0.891 5.891 8 Si 0.894 3.106 9 H -0.276 1.276 10 H -0.289 1.289 11 H -0.291 1.291 12 C 0.177 3.823 13 H 0.104 0.896 14 C -0.144 4.144 15 C 0.100 3.900 16 N -0.693 5.693 17 C 0.553 3.447 18 O -0.546 6.546 19 C -0.183 4.183 20 C 0.164 3.836 21 N -0.485 5.485 22 C 0.151 3.849 23 C -0.206 4.206 24 C 0.573 3.427 25 N -0.850 5.850 26 O -0.532 6.532 27 C 0.040 3.960 28 H 0.027 0.973 29 H 0.052 0.948 30 H 0.050 0.950 31 H 0.037 0.963 32 H 0.036 0.964 33 H 0.254 0.746 34 H 0.030 0.970 35 H 0.081 0.919 36 H 0.030 0.970 37 H 0.057 0.943 38 H 0.058 0.942 39 H 0.410 0.590 40 H 0.174 0.826 41 H 0.161 0.839 42 H 0.401 0.599 43 H 0.407 0.593 44 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.683 -7.241 2.177 15.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.015 3.985 3 N -0.306 5.306 4 C -0.392 4.392 5 H 0.086 0.914 6 C -0.191 4.191 7 N -0.534 5.534 8 Si 0.723 3.277 9 H -0.201 1.201 10 H -0.215 1.215 11 H -0.218 1.218 12 C 0.069 3.931 13 H 0.122 0.878 14 C -0.203 4.203 15 C -0.025 4.025 16 N -0.344 5.344 17 C 0.337 3.663 18 O -0.426 6.426 19 C -0.188 4.188 20 C 0.007 3.993 21 N -0.192 5.192 22 C -0.008 4.008 23 C -0.212 4.212 24 C 0.357 3.643 25 N -0.414 5.414 26 O -0.409 6.409 27 C 0.013 3.987 28 H 0.046 0.954 29 H 0.071 0.929 30 H 0.069 0.931 31 H 0.056 0.944 32 H 0.055 0.945 33 H 0.064 0.936 34 H 0.049 0.951 35 H 0.100 0.900 36 H 0.049 0.951 37 H 0.075 0.925 38 H 0.077 0.923 39 H 0.248 0.752 40 H 0.191 0.809 41 H 0.179 0.821 42 H 0.231 0.769 43 H 0.239 0.761 44 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 13.449 -7.266 1.458 15.355 hybrid contribution 0.411 0.470 0.766 0.988 sum 13.860 -6.796 2.224 15.595 Atomic orbital electron populations 1.22392 0.99750 0.98394 1.02115 1.20806 0.91983 0.87570 0.98134 1.44054 1.73837 1.09759 1.02969 1.19213 1.43394 0.89226 0.87331 0.91423 1.25049 0.98809 0.97882 0.97339 1.70021 1.42615 1.08554 1.32201 0.86369 0.78556 0.80317 0.82432 1.20080 1.21520 1.21780 1.20533 0.90949 0.96601 0.85001 0.87838 1.22124 1.00514 0.99626 0.98029 1.22218 0.86813 1.00841 0.92618 1.45887 1.17133 1.52300 1.19040 1.17905 0.82389 0.79491 0.86479 1.90763 1.80903 1.50803 1.20096 1.21179 0.97360 1.03359 0.96886 1.23483 0.95692 0.91911 0.88251 1.67764 1.00847 1.15174 1.35455 1.23135 0.95372 0.89653 0.92636 1.20847 0.97375 1.05760 0.97207 1.17973 0.82581 0.79267 0.84434 1.43702 1.21264 1.58503 1.17977 1.90859 1.80363 1.48902 1.20771 1.21857 0.88502 0.88771 0.99589 0.95351 0.92894 0.93127 0.94419 0.94537 0.93598 0.95115 0.90025 0.95112 0.92467 0.92326 0.75228 0.80929 0.82149 0.76922 0.76124 0.82248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.13 10.02 37.16 0.37 -2.76 16 2 C 0.14 2.73 5.73 -4.04 -0.02 2.71 16 3 N -0.58 -12.43 1.84 -165.67 -0.30 -12.74 16 4 C -0.26 -6.18 9.50 -15.06 -0.14 -6.33 16 5 H 0.07 1.61 7.90 -52.48 -0.41 1.19 16 6 C 0.01 0.22 4.84 -17.43 -0.08 0.13 16 7 N -0.89 -22.73 10.24 55.49 0.57 -22.17 16 8 Si 0.89 19.58 29.59 -169.99 -5.03 14.55 16 9 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 10 H -0.29 -6.41 7.11 56.52 0.40 -6.01 16 11 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 12 C 0.18 3.60 1.93 -67.93 -0.13 3.47 16 13 H 0.10 2.40 5.93 -51.93 -0.31 2.09 16 14 C -0.14 -2.86 8.25 37.16 0.31 -2.55 16 15 C 0.10 1.83 4.85 -4.05 -0.02 1.81 16 16 N -0.69 -11.81 5.34 -61.25 -0.33 -12.14 16 17 C 0.55 9.39 7.78 -12.33 -0.10 9.29 16 18 O -0.55 -10.88 16.41 5.32 0.09 -10.79 16 19 C -0.18 -2.60 5.88 -104.87 -0.62 -3.22 16 20 C 0.16 2.14 10.71 -17.06 -0.18 1.95 16 21 N -0.48 -5.86 10.33 -12.57 -0.13 -5.99 16 22 C 0.15 1.43 10.71 -17.06 -0.18 1.24 16 23 C -0.21 -2.28 5.88 -104.87 -0.62 -2.89 16 24 C 0.57 6.08 8.05 -12.33 -0.10 5.98 16 25 N -0.85 -4.80 8.83 30.53 0.27 -4.53 16 26 O -0.53 -7.91 17.25 5.32 0.09 -7.82 16 27 C 0.04 0.54 9.25 -38.45 -0.36 0.18 16 28 H 0.03 0.46 8.14 -51.93 -0.42 0.03 16 29 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 30 H 0.05 0.97 6.03 -51.93 -0.31 0.66 16 31 H 0.04 0.70 6.35 -51.93 -0.33 0.37 16 32 H 0.04 0.70 8.09 -51.93 -0.42 0.28 16 33 H 0.25 6.42 8.31 -40.82 -0.34 6.08 16 34 H 0.03 0.57 6.50 -51.92 -0.34 0.23 16 35 H 0.08 1.86 7.22 -51.93 -0.37 1.49 16 36 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.06 1.07 6.76 -51.93 -0.35 0.72 16 38 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 39 H 0.41 6.87 6.14 -40.82 -0.25 6.62 16 40 H 0.17 2.17 6.41 -52.48 -0.34 1.83 16 41 H 0.16 0.80 6.41 -52.48 -0.34 0.46 16 42 H 0.40 1.05 6.88 -40.82 -0.28 0.77 16 43 H 0.41 1.76 8.93 -40.82 -0.36 1.39 16 44 H 0.16 2.34 7.40 -52.49 -0.39 1.95 16 LS Contribution 362.36 15.07 5.46 5.46 Total: -1.00 -30.49 362.36 -6.82 -37.31 By element: Atomic # 1 Polarization: 15.46 SS G_CDS: -5.63 Total: 9.82 kcal Atomic # 6 Polarization: 10.90 SS G_CDS: -1.87 Total: 9.02 kcal Atomic # 7 Polarization: -57.64 SS G_CDS: 0.08 Total: -57.56 kcal Atomic # 8 Polarization: -18.79 SS G_CDS: 0.18 Total: -18.61 kcal Atomic # 14 Polarization: 19.58 SS G_CDS: -5.03 Total: 14.55 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -30.49 -6.82 -37.31 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001156949784.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.294 kcal (2) G-P(sol) polarization free energy of solvation -30.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.310 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.94 seconds