Wall clock time and date at job start Tue Mar 31 2020 13:46:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46496 * 109.47631 * 2 1 4 4 C 1.36939 * 120.00149 * 275.43867 * 3 2 1 5 5 H 1.08002 * 120.00155 * 33.71109 * 4 3 2 6 6 C 1.38816 * 119.99907 * 213.71567 * 4 3 2 7 7 N 1.31621 * 120.00029 * 12.57889 * 6 4 3 8 8 Si 1.86797 * 120.00196 * 192.57490 * 6 4 3 9 9 H 1.48497 * 109.46986 * 90.00069 * 8 6 4 10 10 H 1.48495 * 109.47032 * 210.00325 * 8 6 4 11 11 H 1.48507 * 109.46980 * 330.00244 * 8 6 4 12 12 C 1.46505 * 120.00027 * 95.42972 * 3 2 1 13 13 H 1.09003 * 109.46826 * 179.77502 * 12 3 2 14 14 C 1.53000 * 109.47237 * 59.77370 * 12 3 2 15 15 C 1.52995 * 109.47197 * 299.77087 * 12 3 2 16 16 N 1.46505 * 109.47543 * 305.00096 * 15 12 3 17 17 C 1.34776 * 119.99949 * 179.97438 * 16 15 12 18 18 O 1.21531 * 120.00340 * 0.02562 * 17 16 15 19 19 C 1.47983 * 119.99506 * 179.97438 * 17 16 15 20 20 C 1.39847 * 120.59811 * 5.54914 * 19 17 16 21 21 C 1.38456 * 118.35143 * 179.97438 * 20 19 17 22 22 C 1.38591 * 119.46286 * 0.02562 * 21 20 19 23 23 N 1.31649 * 121.17524 * 0.02562 * 22 21 20 24 24 C 1.32463 * 121.79966 * 359.97438 * 23 22 21 25 25 C 1.48308 * 119.80220 * 180.02562 * 24 23 22 26 26 N 1.34772 * 119.99885 * 76.98319 * 25 24 23 27 27 O 1.21490 * 119.99863 * 256.99063 * 25 24 23 28 28 H 1.08999 * 109.47240 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47501 * 300.00609 * 1 2 3 30 30 H 1.09008 * 109.46918 * 60.00167 * 1 2 3 31 31 H 1.09004 * 109.47054 * 239.99917 * 2 1 3 32 32 H 1.09001 * 109.47219 * 120.00075 * 2 1 3 33 33 H 0.96998 * 120.00358 * 179.97438 * 7 6 4 34 34 H 1.09001 * 109.46948 * 59.99830 * 14 12 3 35 35 H 1.08997 * 109.47171 * 180.02562 * 14 12 3 36 36 H 1.08999 * 109.46735 * 300.00265 * 14 12 3 37 37 H 1.09005 * 109.47614 * 184.99908 * 15 12 3 38 38 H 1.09005 * 109.47248 * 64.99962 * 15 12 3 39 39 H 0.96995 * 119.99388 * 359.97438 * 16 15 12 40 40 H 1.07997 * 120.82080 * 0.25340 * 20 19 17 41 41 H 1.08003 * 120.26997 * 179.97438 * 21 20 19 42 42 H 1.07993 * 119.41433 * 179.97438 * 22 21 20 43 43 H 0.96995 * 120.00508 * 0.02562 * 26 25 24 44 44 H 0.97005 * 119.99919 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.1407 2.0642 -1.1806 5 1 1.4424 1.8829 -1.9842 6 6 3.1624 2.9895 -1.3444 7 7 4.1527 3.0367 -0.4786 8 14 3.1321 4.1676 -2.7937 9 1 2.4083 5.4061 -2.4098 10 1 4.5238 4.5083 -3.1838 11 1 2.4400 3.5248 -3.9397 12 6 2.3758 2.0317 1.2631 13 1 2.7192 3.0470 1.0644 14 6 3.4928 1.2402 1.9463 15 6 1.1503 2.0777 2.1778 16 7 0.0421 2.7315 1.4771 17 6 -1.1473 2.8847 2.0922 18 8 -1.3004 2.4811 3.2282 19 6 -2.2664 3.5456 1.3845 20 6 -2.1416 3.9119 0.0407 21 6 -3.2179 4.5271 -0.5758 22 6 -4.3762 4.7606 0.1485 23 7 -4.4717 4.4083 1.4134 24 6 -3.4722 3.8170 2.0507 25 6 -3.6281 3.4384 3.4761 26 7 -4.3446 2.3465 3.8088 27 8 -3.1100 4.1127 4.3438 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 4.8668 3.6831 -0.5932 34 1 4.3659 1.2074 1.2946 35 1 3.7583 1.7239 2.8862 36 1 3.1494 0.2249 2.1449 37 1 1.3913 2.6394 3.0803 38 1 0.8605 1.0623 2.4483 39 1 0.1645 3.0540 0.5705 40 1 -1.2299 3.7157 -0.5040 41 1 -3.1552 4.8234 -1.6125 42 1 -5.2151 5.2409 -0.3330 43 1 -4.7580 1.8080 3.1160 44 1 -4.4469 2.0991 4.7412 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001157075009.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:46:20 Heat of formation + Delta-G solvation = -14.675723 kcal Electronic energy + Delta-G solvation = -28190.492564 eV Core-core repulsion = 24336.658724 eV Total energy + Delta-G solvation = -3853.833840 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -40.94654 -38.91554 -38.59896 -36.92733 -33.96221 -33.55615 -32.79937 -31.95306 -31.62418 -30.90767 -28.25128 -26.21901 -24.64608 -24.17855 -23.97597 -21.81867 -21.05284 -20.31403 -19.34854 -18.26862 -17.55587 -16.97828 -16.82181 -16.80103 -15.59075 -15.21581 -15.08511 -14.89177 -14.38592 -14.25968 -13.94796 -13.84554 -13.58550 -13.48699 -13.04288 -12.76811 -12.59557 -12.38091 -12.16563 -11.87139 -11.56601 -11.12227 -11.00625 -10.90968 -10.74332 -10.48407 -10.36634 -10.15130 -10.14044 -9.87906 -9.69303 -9.58779 -9.53326 -9.46902 -9.35307 -8.60663 -8.48163 -6.73297 -5.94833 -3.47431 0.42804 0.88556 2.69002 2.96332 3.23464 3.27847 3.31735 3.34136 3.46934 3.71622 4.33299 4.40460 4.59752 4.65722 4.71427 4.88220 5.20841 5.21704 5.29604 5.33786 5.73531 5.84557 5.85252 5.97849 6.13120 6.19220 6.25123 6.31863 6.43941 6.49603 6.57275 6.62691 6.78266 6.82340 6.84539 6.95073 7.08169 7.31747 7.45181 7.50644 7.54616 7.67417 7.97950 8.30643 8.36208 8.54925 9.08961 9.69449 10.26589 11.11135 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.013747 B = 0.004654 C = 0.003959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2036.366895 B = 6014.743968 C = 7070.635823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.140 3.860 3 N -0.583 5.583 4 C -0.265 4.265 5 H 0.064 0.936 6 C 0.012 3.988 7 N -0.892 5.892 8 Si 0.898 3.102 9 H -0.287 1.287 10 H -0.290 1.290 11 H -0.279 1.279 12 C 0.173 3.827 13 H 0.107 0.893 14 C -0.142 4.142 15 C 0.102 3.898 16 N -0.689 5.689 17 C 0.544 3.456 18 O -0.531 6.531 19 C -0.142 4.142 20 C -0.041 4.041 21 C -0.162 4.162 22 C 0.115 3.885 23 N -0.464 5.464 24 C 0.137 3.863 25 C 0.603 3.397 26 N -0.838 5.838 27 O -0.518 6.518 28 H 0.033 0.967 29 H 0.050 0.950 30 H 0.045 0.955 31 H 0.041 0.959 32 H 0.037 0.963 33 H 0.256 0.744 34 H 0.077 0.923 35 H 0.033 0.967 36 H 0.029 0.971 37 H 0.056 0.944 38 H 0.056 0.944 39 H 0.410 0.590 40 H 0.153 0.847 41 H 0.148 0.852 42 H 0.167 0.833 43 H 0.399 0.601 44 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.016 -0.915 -0.085 14.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.013 3.987 3 N -0.305 5.305 4 C -0.395 4.395 5 H 0.082 0.918 6 C -0.188 4.188 7 N -0.534 5.534 8 Si 0.728 3.272 9 H -0.213 1.213 10 H -0.217 1.217 11 H -0.204 1.204 12 C 0.066 3.934 13 H 0.124 0.876 14 C -0.201 4.201 15 C -0.023 4.023 16 N -0.339 5.339 17 C 0.329 3.671 18 O -0.410 6.410 19 C -0.148 4.148 20 C -0.067 4.067 21 C -0.182 4.182 22 C -0.043 4.043 23 N -0.174 5.174 24 C -0.004 4.004 25 C 0.385 3.615 26 N -0.401 5.401 27 O -0.391 6.391 28 H 0.052 0.948 29 H 0.069 0.931 30 H 0.064 0.936 31 H 0.059 0.941 32 H 0.056 0.944 33 H 0.066 0.934 34 H 0.096 0.904 35 H 0.052 0.948 36 H 0.048 0.952 37 H 0.074 0.926 38 H 0.074 0.926 39 H 0.247 0.753 40 H 0.171 0.829 41 H 0.166 0.834 42 H 0.184 0.816 43 H 0.227 0.773 44 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges -14.255 -0.390 1.613 14.351 hybrid contribution 0.717 0.261 -1.854 2.005 sum -13.538 -0.129 -0.242 13.541 Atomic orbital electron populations 1.22457 1.00161 0.99049 1.01340 1.20760 0.91578 0.87512 0.98820 1.43892 1.76128 1.08215 1.02257 1.19108 1.08410 1.18768 0.93169 0.91808 1.25219 0.94757 1.01253 0.97610 1.69941 1.10149 1.36464 1.36871 0.86376 0.77133 0.81177 0.82547 1.21343 1.21652 1.20393 1.20583 0.88724 1.00062 0.84049 0.87562 1.21990 1.01028 0.97874 0.99220 1.22265 0.88015 0.96218 0.95842 1.45847 1.10633 1.58470 1.18974 1.17997 0.82862 0.80180 0.86088 1.90783 1.82504 1.50313 1.17397 1.21080 0.95711 1.02697 0.95287 1.22004 0.99562 0.92270 0.92893 1.22338 0.93884 0.99690 1.02243 1.22998 0.97372 0.94732 0.89179 1.67706 1.29232 1.10354 1.10154 1.21122 0.89582 0.95158 0.94588 1.17377 0.77046 0.80752 0.86306 1.43464 1.55336 1.29119 1.12231 1.90824 1.46408 1.52890 1.48993 0.94806 0.93074 0.93560 0.94064 0.94434 0.93405 0.90439 0.94752 0.95213 0.92585 0.92593 0.75261 0.82899 0.83423 0.81572 0.77291 0.76251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.89 9.86 37.16 0.37 -2.52 16 2 C 0.14 2.68 5.69 -4.05 -0.02 2.66 16 3 N -0.58 -12.44 1.86 -165.66 -0.31 -12.75 16 4 C -0.26 -6.20 9.27 -15.06 -0.14 -6.34 16 5 H 0.06 1.49 7.86 -52.49 -0.41 1.07 16 6 C 0.01 0.29 4.98 -17.43 -0.09 0.20 16 7 N -0.89 -22.85 10.38 55.49 0.58 -22.27 16 8 Si 0.90 19.39 29.57 -169.99 -5.03 14.37 16 9 H -0.29 -6.15 7.11 56.52 0.40 -5.75 16 10 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 11 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 12 C 0.17 3.60 1.92 -67.93 -0.13 3.47 16 13 H 0.11 2.53 5.89 -51.93 -0.31 2.22 16 14 C -0.14 -2.84 9.04 37.16 0.34 -2.50 16 15 C 0.10 1.93 4.33 -4.04 -0.02 1.91 16 16 N -0.69 -12.30 3.97 -61.20 -0.24 -12.54 16 17 C 0.54 9.87 7.53 -12.27 -0.09 9.78 16 18 O -0.53 -11.02 13.98 -12.45 -0.17 -11.19 16 19 C -0.14 -2.20 5.92 -104.49 -0.62 -2.81 16 20 C -0.04 -0.51 9.63 -38.90 -0.37 -0.89 16 21 C -0.16 -1.58 10.10 -39.37 -0.40 -1.97 16 22 C 0.12 1.15 11.17 -17.50 -0.20 0.96 16 23 N -0.46 -6.17 10.28 -9.51 -0.10 -6.26 16 24 C 0.14 2.12 6.55 -82.64 -0.54 1.57 16 25 C 0.60 10.03 5.45 -12.12 -0.07 9.97 16 26 N -0.84 -10.01 8.87 30.63 0.27 -9.74 16 27 O -0.52 -10.74 17.29 -12.42 -0.21 -10.95 16 28 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.05 0.90 4.99 -51.93 -0.26 0.64 16 30 H 0.05 0.79 8.14 -51.92 -0.42 0.36 16 31 H 0.04 0.82 8.08 -51.93 -0.42 0.40 16 32 H 0.04 0.70 6.43 -51.93 -0.33 0.37 16 33 H 0.26 6.50 8.31 -40.82 -0.34 6.16 16 34 H 0.08 1.76 7.46 -51.93 -0.39 1.37 16 35 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.03 0.55 6.66 -51.93 -0.35 0.20 16 37 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 38 H 0.06 1.08 7.02 -51.93 -0.36 0.71 16 39 H 0.41 7.24 6.02 -40.82 -0.25 7.00 16 40 H 0.15 1.84 6.56 -52.49 -0.34 1.50 16 41 H 0.15 0.97 8.06 -52.48 -0.42 0.55 16 42 H 0.17 1.03 8.06 -52.49 -0.42 0.61 16 43 H 0.40 3.69 8.82 -40.82 -0.36 3.33 16 44 H 0.41 4.18 8.93 -40.82 -0.36 3.82 16 LS Contribution 360.67 15.07 5.44 5.44 Total: -1.00 -31.04 360.67 -7.58 -38.61 By element: Atomic # 1 Polarization: 19.64 SS G_CDS: -5.82 Total: 13.82 kcal Atomic # 6 Polarization: 15.46 SS G_CDS: -1.98 Total: 13.48 kcal Atomic # 7 Polarization: -63.77 SS G_CDS: 0.20 Total: -63.57 kcal Atomic # 8 Polarization: -21.75 SS G_CDS: -0.39 Total: -22.14 kcal Atomic # 14 Polarization: 19.39 SS G_CDS: -5.03 Total: 14.37 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -31.04 -7.58 -38.61 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157075009.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.939 kcal (2) G-P(sol) polarization free energy of solvation -31.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.614 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds