Wall clock time and date at job start Tue Mar 31 2020 14:00:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.45205 * 109.46995 * 2 1 4 4 C 1.34231 * 116.99629 * 179.97438 * 3 2 1 5 5 O 1.20824 * 120.00361 * 0.02562 * 4 3 2 6 6 C 1.50706 * 119.99439 * 180.02562 * 4 3 2 7 7 N 1.46898 * 109.46760 * 185.34079 * 6 4 3 8 8 C 1.46904 * 110.99808 * 199.64742 * 7 6 4 9 9 C 1.50694 * 109.47179 * 71.91074 * 8 7 6 10 10 H 1.07997 * 120.00204 * 355.08683 * 9 8 7 11 11 C 1.37881 * 119.99955 * 175.08636 * 9 8 7 12 12 N 1.31511 * 120.00213 * 0.02562 * 11 9 8 13 13 Si 1.86804 * 119.99905 * 180.02562 * 11 9 8 14 14 H 1.48498 * 109.47354 * 59.99962 * 13 11 9 15 15 H 1.48497 * 109.46801 * 180.02562 * 13 11 9 16 16 H 1.48501 * 109.47195 * 300.00052 * 13 11 9 17 17 C 1.38546 * 111.00194 * 75.69490 * 7 6 4 18 18 N 1.32967 * 120.53784 * 29.12129 * 17 7 6 19 19 C 1.31749 * 120.54210 * 179.97438 * 18 17 7 20 20 N 1.31684 * 121.86238 * 0.09017 * 19 18 17 21 21 C 1.32935 * 121.10552 * 0.02562 * 20 19 18 22 22 C 1.37475 * 118.97528 * 359.81723 * 21 20 19 23 23 C 1.50412 * 121.97048 * 180.47755 * 22 21 20 24 24 C 1.52991 * 109.84262 * 343.09018 * 23 22 21 25 25 N 1.47147 * 108.57526 * 50.08308 * 24 23 22 26 26 C 1.46719 * 110.36816 * 288.99751 * 25 24 23 27 27 H 1.09001 * 109.47085 * 299.99353 * 1 2 3 28 28 H 1.08999 * 109.47085 * 59.99447 * 1 2 3 29 29 H 1.08997 * 109.46998 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47085 * 240.00647 * 2 1 3 31 31 H 1.08994 * 109.47519 * 120.00431 * 2 1 3 32 32 H 1.08995 * 109.47143 * 65.34458 * 6 4 3 33 33 H 1.08990 * 109.47363 * 305.34102 * 6 4 3 34 34 H 1.09008 * 109.46648 * 191.90792 * 8 7 6 35 35 H 1.08994 * 109.47128 * 311.90824 * 8 7 6 36 36 H 0.96999 * 120.00091 * 179.97438 * 12 11 9 37 37 H 1.08003 * 119.06775 * 180.12343 * 19 18 17 38 38 H 1.08997 * 109.41261 * 103.21036 * 23 22 21 39 39 H 1.09000 * 109.40722 * 223.05657 * 23 22 21 40 40 H 1.09005 * 109.61723 * 169.80926 * 24 23 22 41 41 H 1.09004 * 109.62128 * 290.16860 * 24 23 22 42 42 H 1.00900 * 110.99592 * 165.50220 * 25 24 23 43 43 H 1.09007 * 109.34074 * 292.21794 * 26 25 24 44 44 H 1.09001 * 109.30287 * 172.77901 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5448 0.0005 5 8 4.0807 0.5867 0.0005 6 6 3.9206 2.9375 0.0012 7 7 5.3821 2.8629 -0.1273 8 6 6.0146 4.1088 0.3263 9 6 5.9183 4.2036 1.8272 10 1 5.3670 3.4582 2.3811 11 6 6.5340 5.2420 2.4933 12 7 7.2049 6.1501 1.8189 13 14 6.4152 5.3591 4.3539 14 1 7.0048 4.1410 4.9653 15 1 7.1564 6.5573 4.8228 16 1 4.9892 5.4724 4.7527 17 6 5.7516 2.5637 -1.4286 18 7 4.9852 2.9332 -2.4504 19 6 5.3368 2.6491 -3.6880 20 7 6.4459 1.9946 -3.9627 21 6 7.2624 1.5902 -2.9947 22 6 6.9359 1.8682 -1.6886 23 6 7.8157 1.4518 -0.5418 24 6 8.8016 0.3783 -1.0068 25 7 9.4594 0.8472 -2.2367 26 6 8.5130 0.8367 -3.3578 27 1 -0.3633 0.5137 0.8901 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0276 -0.0005 30 1 1.8933 -0.5137 -0.8901 31 1 1.8934 -0.5139 0.8899 32 1 3.6630 3.4368 0.9351 33 1 3.5105 3.5007 -0.8370 34 1 7.0632 4.1132 0.0285 35 1 5.5052 4.9602 -0.1249 36 1 7.6377 6.8808 2.2875 37 1 4.6975 2.9624 -4.5001 38 1 8.3682 2.3173 -0.1763 39 1 7.1978 1.0509 0.2617 40 1 9.5504 0.2092 -0.2329 41 1 8.2653 -0.5495 -1.2061 42 1 10.2740 0.2899 -2.4460 43 1 8.2549 -0.1937 -3.6028 44 1 8.9772 1.3052 -4.2257 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001157159248.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:00:57 Heat of formation + Delta-G solvation = -19.938430 kcal Electronic energy + Delta-G solvation = -28013.760091 eV Core-core repulsion = 24159.698043 eV Total energy + Delta-G solvation = -3854.062048 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.10673 -40.00415 -37.56220 -36.94968 -35.95087 -33.12752 -32.26010 -32.04557 -31.63257 -29.69772 -28.31563 -26.71932 -24.90787 -24.05464 -23.16527 -22.68194 -21.41048 -20.64552 -19.70050 -17.82331 -17.33210 -17.11883 -16.37470 -16.25691 -15.72192 -15.44496 -15.33943 -14.75363 -14.57231 -14.21941 -14.08899 -13.92187 -13.50521 -13.34206 -13.09272 -12.87591 -12.74162 -12.40551 -12.10341 -12.01046 -11.71198 -11.54536 -11.43184 -11.40913 -11.21691 -10.99153 -10.85835 -10.39172 -10.35160 -10.23546 -9.99621 -9.93410 -9.53174 -8.93097 -8.78443 -8.57919 -8.47246 -7.77918 -6.18748 -4.23414 1.39636 1.45756 2.66102 2.85861 3.26572 3.31475 3.33852 3.99291 4.04386 4.16832 4.36499 4.52011 4.61312 4.90768 4.93010 5.04434 5.09447 5.16730 5.18487 5.25247 5.32641 5.40006 5.48534 5.60318 5.68303 5.72107 5.78843 5.82358 5.90174 5.94174 6.06104 6.13323 6.35586 6.52873 6.65394 6.73687 6.86922 6.91559 7.05846 7.29135 7.35076 7.55172 7.65075 7.87437 8.15218 8.22691 8.50858 8.81378 9.41847 10.91398 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.007424 B = 0.006381 C = 0.004037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3770.748532 B = 4386.850935 C = 6933.450252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.063 3.937 3 O -0.363 6.363 4 C 0.465 3.535 5 O -0.498 6.498 6 C 0.065 3.935 7 N -0.461 5.461 8 C 0.206 3.794 9 C -0.520 4.520 10 H 0.067 0.933 11 C 0.064 3.936 12 N -0.891 5.891 13 Si 0.902 3.098 14 H -0.274 1.274 15 H -0.286 1.286 16 H -0.275 1.275 17 C 0.368 3.632 18 N -0.565 5.565 19 C 0.300 3.700 20 N -0.542 5.542 21 C 0.169 3.831 22 C -0.146 4.146 23 C -0.060 4.060 24 C 0.053 3.947 25 N -0.683 5.683 26 C 0.113 3.887 27 H 0.067 0.933 28 H 0.065 0.935 29 H 0.075 0.925 30 H 0.063 0.937 31 H 0.067 0.933 32 H 0.133 0.867 33 H 0.099 0.901 34 H 0.046 0.954 35 H 0.009 0.991 36 H 0.266 0.734 37 H 0.189 0.811 38 H 0.091 0.909 39 H 0.097 0.903 40 H 0.083 0.917 41 H 0.034 0.966 42 H 0.348 0.652 43 H 0.052 0.948 44 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.435 -11.267 -7.080 14.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.011 4.011 3 O -0.280 6.280 4 C 0.307 3.693 5 O -0.384 6.384 6 C -0.063 4.063 7 N -0.182 5.182 8 C 0.085 3.915 9 C -0.559 4.559 10 H 0.085 0.915 11 C -0.139 4.139 12 N -0.529 5.529 13 Si 0.729 3.271 14 H -0.200 1.200 15 H -0.212 1.212 16 H -0.201 1.201 17 C 0.129 3.871 18 N -0.285 5.285 19 C 0.010 3.990 20 N -0.259 5.259 21 C 0.026 3.974 22 C -0.153 4.153 23 C -0.098 4.098 24 C -0.076 4.076 25 N -0.315 5.315 26 C -0.017 4.017 27 H 0.086 0.914 28 H 0.084 0.916 29 H 0.094 0.906 30 H 0.082 0.918 31 H 0.085 0.915 32 H 0.150 0.850 33 H 0.116 0.884 34 H 0.064 0.936 35 H 0.027 0.973 36 H 0.076 0.924 37 H 0.205 0.795 38 H 0.109 0.891 39 H 0.115 0.885 40 H 0.101 0.899 41 H 0.052 0.948 42 H 0.166 0.834 43 H 0.070 0.930 44 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -4.616 -10.818 -7.293 13.839 hybrid contribution 0.059 -0.603 0.938 1.117 sum -4.557 -11.421 -6.355 13.841 Atomic orbital electron populations 1.21785 0.92905 1.02576 1.03501 1.22901 0.95082 0.80984 1.02176 1.86507 1.25198 1.31644 1.84656 1.24003 0.80022 0.93296 0.72022 1.90609 1.60212 1.42947 1.44667 1.21605 0.88363 0.89848 1.06512 1.59447 1.07102 1.38833 1.12830 1.19952 0.94762 0.80192 0.96584 1.20977 1.34292 1.10231 0.90373 0.91487 1.24944 0.94756 0.95313 0.98927 1.69937 1.33443 1.13417 1.36093 0.86489 0.78332 0.77589 0.84646 1.19981 1.21206 1.20070 1.20333 0.89057 0.88459 0.89274 1.68421 1.36640 1.22572 1.00873 1.24428 0.91065 0.91016 0.92511 1.68139 1.05787 1.14807 1.37138 1.20872 0.94413 0.93636 0.88435 1.20596 0.97483 1.00897 0.96339 1.20310 0.95269 0.99196 0.95065 1.22103 0.97260 0.96126 0.92090 1.60557 1.08546 1.59162 1.03196 1.20482 0.89182 0.97631 0.94438 0.91430 0.91577 0.90601 0.91848 0.91475 0.84957 0.88371 0.93565 0.97266 0.92445 0.79486 0.89065 0.88513 0.89879 0.94784 0.83415 0.92980 0.88314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.42 10.29 37.16 0.38 -1.03 16 2 C 0.06 0.82 6.19 37.16 0.23 1.04 16 3 O -0.36 -5.91 10.22 -39.26 -0.40 -6.31 16 4 C 0.46 8.78 7.75 36.01 0.28 9.06 16 5 O -0.50 -10.50 15.71 -18.75 -0.29 -10.79 16 6 C 0.07 1.27 5.20 -4.97 -0.03 1.25 16 7 N -0.46 -9.97 3.24 -175.71 -0.57 -10.54 16 8 C 0.21 5.09 4.50 -4.98 -0.02 5.06 16 9 C -0.52 -13.54 8.42 -34.44 -0.29 -13.83 16 10 H 0.07 1.72 7.53 -52.49 -0.40 1.33 16 11 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 12 N -0.89 -25.04 13.29 55.43 0.74 -24.31 16 13 Si 0.90 20.54 29.54 -169.99 -5.02 15.52 16 14 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 15 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 16 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 17 C 0.37 7.64 4.82 -154.73 -0.75 6.89 16 18 N -0.57 -10.99 8.80 -13.80 -0.12 -11.11 16 19 C 0.30 5.12 12.28 -92.29 -1.13 3.99 16 20 N -0.54 -9.43 10.34 -11.05 -0.11 -9.54 16 21 C 0.17 2.97 6.69 -82.51 -0.55 2.41 16 22 C -0.15 -2.84 5.70 -104.46 -0.60 -3.44 16 23 C -0.06 -1.08 5.23 -28.03 -0.15 -1.23 16 24 C 0.05 0.74 6.58 -3.69 -0.02 0.72 16 25 N -0.68 -8.88 6.87 -115.14 -0.79 -9.67 16 26 C 0.11 1.53 6.62 -5.20 -0.03 1.50 16 27 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 29 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 30 H 0.06 0.83 8.13 -51.93 -0.42 0.41 16 31 H 0.07 0.87 8.13 -51.93 -0.42 0.44 16 32 H 0.13 2.56 6.95 -51.93 -0.36 2.20 16 33 H 0.10 1.85 6.95 -51.93 -0.36 1.49 16 34 H 0.05 1.24 7.09 -51.92 -0.37 0.87 16 35 H 0.01 0.25 8.05 -51.93 -0.42 -0.17 16 36 H 0.27 7.11 8.31 -40.82 -0.34 6.78 16 37 H 0.19 2.44 8.06 -52.48 -0.42 2.02 16 38 H 0.09 1.81 7.55 -51.93 -0.39 1.42 16 39 H 0.10 1.88 7.89 -51.93 -0.41 1.47 16 40 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 41 H 0.03 0.46 8.06 -51.93 -0.42 0.04 16 42 H 0.35 3.36 8.90 -39.29 -0.35 3.01 16 43 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 44 H 0.10 1.23 8.14 -51.93 -0.42 0.81 16 LS Contribution 365.51 15.07 5.51 5.51 Total: -1.00 -31.22 365.51 -10.26 -41.48 By element: Atomic # 1 Polarization: 12.17 SS G_CDS: -6.41 Total: 5.76 kcal Atomic # 6 Polarization: 16.77 SS G_CDS: -2.78 Total: 14.00 kcal Atomic # 7 Polarization: -64.30 SS G_CDS: -0.86 Total: -65.16 kcal Atomic # 8 Polarization: -16.41 SS G_CDS: -0.70 Total: -17.10 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -5.02 Total: 15.52 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -31.22 -10.26 -41.48 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157159248.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.537 kcal (2) G-P(sol) polarization free energy of solvation -31.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.475 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds