Wall clock time and date at job start Tue Mar 31 2020 13:46:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46498 * 109.47460 * 2 1 4 4 C 1.36938 * 119.99373 * 275.72991 * 3 2 1 5 5 H 1.08001 * 120.00438 * 33.26539 * 4 3 2 6 6 C 1.38810 * 120.00006 * 213.25746 * 4 3 2 7 7 N 1.31621 * 119.99857 * 17.25864 * 6 4 3 8 8 Si 1.86799 * 120.00341 * 197.25481 * 6 4 3 9 9 H 1.48497 * 109.47341 * 0.02562 * 8 6 4 10 10 H 1.48505 * 109.47171 * 120.00472 * 8 6 4 11 11 H 1.48500 * 109.47136 * 240.00138 * 8 6 4 12 12 C 1.46495 * 120.00611 * 95.72439 * 3 2 1 13 13 H 1.08997 * 109.47262 * 180.11103 * 12 3 2 14 14 C 1.53005 * 109.46703 * 60.11181 * 12 3 2 15 15 C 1.53000 * 109.47281 * 300.11811 * 12 3 2 16 16 N 1.46500 * 109.46982 * 304.99695 * 15 12 3 17 17 C 1.34769 * 120.00266 * 180.02562 * 16 15 12 18 18 O 1.21511 * 120.00025 * 359.97438 * 17 16 15 19 19 C 1.48232 * 120.00233 * 179.97438 * 17 16 15 20 20 C 1.39629 * 119.65373 * 179.97438 * 19 17 16 21 21 C 1.38538 * 119.24585 * 180.02562 * 20 19 17 22 22 C 1.38585 * 118.55476 * 0.02562 * 21 20 19 23 23 C 1.39591 * 119.24518 * 359.97438 * 22 21 20 24 24 C 1.48219 * 119.65423 * 179.97438 * 23 22 21 25 25 N 1.34779 * 120.00449 * 180.02562 * 24 23 22 26 26 O 1.21513 * 120.00268 * 0.02562 * 24 23 22 27 27 N 1.32338 * 119.65114 * 359.97438 * 19 17 16 28 28 H 1.08995 * 109.47742 * 300.01045 * 1 2 3 29 29 H 1.09006 * 109.46590 * 60.00939 * 1 2 3 30 30 H 1.09001 * 109.47533 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.47742 * 239.98954 * 2 1 3 32 32 H 1.09006 * 109.46590 * 119.99061 * 2 1 3 33 33 H 0.97000 * 120.00214 * 179.97438 * 7 6 4 34 34 H 1.08992 * 109.47202 * 300.00434 * 14 12 3 35 35 H 1.09006 * 109.47087 * 60.00540 * 14 12 3 36 36 H 1.08998 * 109.47091 * 179.97438 * 14 12 3 37 37 H 1.08996 * 109.46986 * 184.99748 * 15 12 3 38 38 H 1.08998 * 109.47129 * 64.99513 * 15 12 3 39 39 H 0.97004 * 119.99738 * 359.97438 * 16 15 12 40 40 H 1.08008 * 120.37607 * 359.97438 * 20 19 17 41 41 H 1.08001 * 120.72022 * 179.97438 * 21 20 19 42 42 H 1.08002 * 120.37726 * 180.02562 * 22 21 20 43 43 H 0.97007 * 119.99295 * 359.97438 * 25 24 23 44 44 H 0.96998 * 120.00105 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1349 2.0660 -1.1801 5 1 1.4371 1.8808 -1.9832 6 6 3.1500 2.9986 -1.3440 7 7 4.1868 2.9920 -0.5332 8 14 3.0447 4.2626 -2.7153 9 1 1.7887 4.0590 -3.4808 10 1 3.0522 5.6281 -2.1315 11 1 4.2093 4.1062 -3.6233 12 6 2.3819 2.0297 1.2623 13 1 2.7185 3.0473 1.0642 14 6 3.5080 1.2417 1.9346 15 6 1.1630 2.0664 2.1864 16 7 0.0463 2.7165 1.4961 17 6 -1.1388 2.8627 2.1208 18 8 -1.2813 2.4548 3.2565 19 6 -2.2686 3.5210 1.4226 20 6 -3.4935 3.6681 2.0766 21 6 -4.5438 4.2842 1.4159 22 6 -4.3391 4.7345 0.1213 23 6 -3.0890 4.5552 -0.4734 24 6 -2.8602 5.0327 -1.8578 25 7 -1.6561 4.8629 -2.4391 26 8 -3.7582 5.5775 -2.4688 27 7 -2.1056 3.9632 0.1860 28 1 -0.3634 0.5140 0.8898 29 1 -0.3633 0.5137 -0.8901 30 1 -0.3634 -1.0276 0.0005 31 1 1.8934 -0.5140 -0.8898 32 1 1.8932 -0.5137 0.8901 33 1 4.8964 3.6434 -0.6479 34 1 3.1714 0.2241 2.1326 35 1 4.3764 1.2155 1.2763 36 1 3.7788 1.7244 2.8736 37 1 1.4080 2.6265 3.0887 38 1 0.8806 1.0487 2.4558 39 1 0.1602 3.0425 0.5896 40 1 -3.6209 3.3049 3.0857 41 1 -5.5015 4.4101 1.8989 42 1 -5.1374 5.2193 -0.4210 43 1 -0.9391 4.4283 -1.9511 44 1 -1.5064 5.1757 -3.3449 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001157209880.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:46:05 Heat of formation + Delta-G solvation = -18.487478 kcal Electronic energy + Delta-G solvation = -28114.865046 eV Core-core repulsion = 24260.865915 eV Total energy + Delta-G solvation = -3853.999130 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -40.89030 -39.37083 -38.40128 -36.91884 -34.04688 -33.71341 -32.60264 -31.91058 -31.66438 -30.91687 -28.21260 -26.14617 -25.00629 -24.04018 -23.88978 -21.78694 -21.22917 -20.16717 -19.33966 -18.29514 -17.52115 -17.03316 -16.78862 -16.15145 -15.77437 -15.38775 -15.07444 -14.92269 -14.80079 -14.36673 -14.21745 -13.83471 -13.53097 -13.29587 -13.14421 -12.72885 -12.36604 -12.27418 -12.14152 -11.87063 -11.55373 -11.11254 -10.99031 -10.87472 -10.84159 -10.69867 -10.32786 -10.22885 -10.13272 -9.99264 -9.70517 -9.68075 -9.56413 -9.46785 -9.38611 -8.56998 -8.46769 -6.70972 -5.92408 -3.40697 0.35717 0.76809 2.43691 3.12886 3.23858 3.26046 3.31796 3.36819 3.45704 3.87611 4.01081 4.36584 4.66602 4.72136 4.78087 4.85693 5.22390 5.30428 5.33438 5.37285 5.70503 5.82920 5.86707 6.02499 6.12474 6.21192 6.26017 6.34110 6.44040 6.51158 6.57966 6.64881 6.70936 6.79925 6.88601 6.94855 7.13740 7.20706 7.42915 7.48682 7.54391 7.73503 8.06811 8.16866 8.38958 8.57085 9.11728 9.73294 10.30780 11.14368 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.010836 B = 0.005695 C = 0.004189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2583.249318 B = 4915.173766 C = 6682.060428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.140 3.860 3 N -0.582 5.582 4 C -0.260 4.260 5 H 0.065 0.935 6 C 0.011 3.989 7 N -0.890 5.890 8 Si 0.893 3.107 9 H -0.276 1.276 10 H -0.289 1.289 11 H -0.291 1.291 12 C 0.176 3.824 13 H 0.101 0.899 14 C -0.144 4.144 15 C 0.098 3.902 16 N -0.675 5.675 17 C 0.559 3.441 18 O -0.550 6.550 19 C 0.090 3.910 20 C -0.093 4.093 21 C -0.089 4.089 22 C -0.096 4.096 23 C 0.074 3.926 24 C 0.581 3.419 25 N -0.829 5.829 26 O -0.544 6.544 27 N -0.425 5.425 28 H 0.049 0.951 29 H 0.047 0.953 30 H 0.032 0.968 31 H 0.041 0.959 32 H 0.037 0.963 33 H 0.254 0.746 34 H 0.030 0.970 35 H 0.079 0.921 36 H 0.033 0.967 37 H 0.056 0.944 38 H 0.057 0.943 39 H 0.421 0.579 40 H 0.154 0.846 41 H 0.149 0.851 42 H 0.152 0.848 43 H 0.418 0.582 44 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.826 1.623 3.214 12.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.014 3.986 3 N -0.303 5.303 4 C -0.389 4.389 5 H 0.082 0.918 6 C -0.189 4.189 7 N -0.533 5.533 8 Si 0.723 3.277 9 H -0.201 1.201 10 H -0.215 1.215 11 H -0.218 1.218 12 C 0.069 3.931 13 H 0.119 0.881 14 C -0.203 4.203 15 C -0.028 4.028 16 N -0.324 5.324 17 C 0.342 3.658 18 O -0.429 6.429 19 C -0.052 4.052 20 C -0.114 4.114 21 C -0.114 4.114 22 C -0.117 4.117 23 C -0.067 4.067 24 C 0.363 3.637 25 N -0.391 5.391 26 O -0.422 6.422 27 N -0.139 5.139 28 H 0.068 0.932 29 H 0.066 0.934 30 H 0.051 0.949 31 H 0.059 0.941 32 H 0.055 0.945 33 H 0.064 0.936 34 H 0.049 0.951 35 H 0.098 0.902 36 H 0.052 0.948 37 H 0.074 0.926 38 H 0.076 0.924 39 H 0.259 0.741 40 H 0.171 0.829 41 H 0.167 0.833 42 H 0.170 0.830 43 H 0.250 0.750 44 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges -11.545 1.631 3.323 12.124 hybrid contribution -0.243 0.802 -0.870 1.208 sum -11.789 2.433 2.453 12.285 Atomic orbital electron populations 1.22440 1.00041 0.98924 1.01504 1.20756 0.91617 0.87445 0.98765 1.43877 1.75924 1.08264 1.02254 1.19108 1.08471 1.18051 0.93292 0.91774 1.25157 0.94580 1.01404 0.97776 1.70006 1.07882 1.35900 1.39490 0.86390 0.77718 0.81690 0.81882 1.20073 1.21531 1.21799 1.20502 0.88773 0.99650 0.84211 0.88149 1.22020 1.01094 0.97949 0.99271 1.22306 0.88018 0.96442 0.96004 1.45878 1.10123 1.56944 1.19477 1.17817 0.82586 0.79869 0.85547 1.90749 1.83073 1.51265 1.17804 1.21371 0.94831 0.98549 0.90443 1.22364 0.92012 0.95316 1.01698 1.21640 0.99642 0.96129 0.94028 1.22293 0.97502 0.96691 0.95191 1.21087 0.91002 0.99412 0.95174 1.17798 0.82884 0.78245 0.84727 1.43738 1.13991 1.61859 1.19545 1.90810 1.43383 1.43878 1.64088 1.67459 1.32426 1.06296 1.07760 0.93151 0.93417 0.94922 0.94076 0.94501 0.93605 0.95109 0.90233 0.94814 0.92562 0.92441 0.74077 0.82874 0.83326 0.83039 0.75005 0.76280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.99 9.86 37.15 0.37 -2.62 16 2 C 0.14 2.73 5.67 -4.05 -0.02 2.71 16 3 N -0.58 -12.43 1.85 -165.67 -0.31 -12.74 16 4 C -0.26 -6.09 9.26 -15.06 -0.14 -6.23 16 5 H 0.06 1.52 7.89 -52.49 -0.41 1.10 16 6 C 0.01 0.26 4.85 -17.43 -0.08 0.18 16 7 N -0.89 -22.77 10.60 55.49 0.59 -22.18 16 8 Si 0.89 19.21 29.59 -169.99 -5.03 14.18 16 9 H -0.28 -5.56 7.11 56.52 0.40 -5.16 16 10 H -0.29 -6.33 7.11 56.52 0.40 -5.93 16 11 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 12 C 0.18 3.60 1.92 -67.93 -0.13 3.47 16 13 H 0.10 2.35 6.04 -51.93 -0.31 2.04 16 14 C -0.14 -2.82 9.05 37.16 0.34 -2.49 16 15 C 0.10 1.79 4.34 -4.04 -0.02 1.77 16 16 N -0.67 -11.97 3.97 -61.13 -0.24 -12.21 16 17 C 0.56 9.60 7.58 -12.16 -0.09 9.51 16 18 O -0.55 -10.47 16.32 5.36 0.09 -10.39 16 19 C 0.09 1.32 6.75 -83.02 -0.56 0.76 16 20 C -0.09 -1.09 9.63 -38.95 -0.38 -1.47 16 21 C -0.09 -0.83 10.16 -39.34 -0.40 -1.23 16 22 C -0.10 -1.06 9.63 -38.95 -0.38 -1.43 16 23 C 0.07 1.00 6.75 -83.03 -0.56 0.44 16 24 C 0.58 8.29 8.09 -12.16 -0.10 8.19 16 25 N -0.83 -10.68 8.86 30.62 0.27 -10.41 16 26 O -0.54 -8.85 17.16 5.35 0.09 -8.75 16 27 N -0.42 -6.22 8.71 -6.38 -0.06 -6.27 16 28 H 0.05 0.91 4.99 -51.93 -0.26 0.65 16 29 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 30 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.04 0.83 8.09 -51.93 -0.42 0.41 16 32 H 0.04 0.69 6.45 -51.93 -0.33 0.36 16 33 H 0.25 6.42 8.31 -40.82 -0.34 6.08 16 34 H 0.03 0.56 6.67 -51.93 -0.35 0.21 16 35 H 0.08 1.78 7.39 -51.93 -0.38 1.40 16 36 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 38 H 0.06 1.07 7.05 -51.93 -0.37 0.71 16 39 H 0.42 7.77 7.22 -40.82 -0.29 7.48 16 40 H 0.15 1.64 7.64 -52.48 -0.40 1.24 16 41 H 0.15 0.86 8.06 -52.49 -0.42 0.43 16 42 H 0.15 1.46 7.64 -52.49 -0.40 1.05 16 43 H 0.42 5.63 8.16 -40.82 -0.33 5.30 16 44 H 0.41 4.56 8.93 -40.82 -0.36 4.20 16 LS Contribution 365.02 15.07 5.50 5.50 Total: -1.00 -27.91 365.02 -7.13 -35.04 By element: Atomic # 1 Polarization: 22.55 SS G_CDS: -5.88 Total: 16.67 kcal Atomic # 6 Polarization: 13.71 SS G_CDS: -2.15 Total: 11.56 kcal Atomic # 7 Polarization: -64.06 SS G_CDS: 0.26 Total: -63.80 kcal Atomic # 8 Polarization: -19.32 SS G_CDS: 0.18 Total: -19.14 kcal Atomic # 14 Polarization: 19.21 SS G_CDS: -5.03 Total: 14.18 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -27.91 -7.13 -35.04 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157209880.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.549 kcal (2) G-P(sol) polarization free energy of solvation -27.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.036 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.487 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds