Wall clock time and date at job start Tue Mar 31 2020 13:46:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46497 * 109.47012 * 2 1 4 4 C 1.36927 * 120.00047 * 275.72805 * 3 2 1 5 5 H 1.07997 * 120.00277 * 33.27482 * 4 3 2 6 6 C 1.38811 * 120.00079 * 213.26816 * 4 3 2 7 7 N 1.31621 * 120.00127 * 17.27936 * 6 4 3 8 8 Si 1.86803 * 120.00224 * 197.28107 * 6 4 3 9 9 H 1.48505 * 109.47116 * 359.97438 * 8 6 4 10 10 H 1.48496 * 109.47345 * 119.99972 * 8 6 4 11 11 H 1.48501 * 109.47247 * 240.00130 * 8 6 4 12 12 C 1.46499 * 119.99716 * 95.73207 * 3 2 1 13 13 H 1.09001 * 109.47137 * 180.08705 * 12 3 2 14 14 C 1.52999 * 109.47323 * 60.08920 * 12 3 2 15 15 C 1.52998 * 109.47361 * 300.08889 * 12 3 2 16 16 N 1.46507 * 109.47067 * 304.99901 * 15 12 3 17 17 C 1.34774 * 120.00294 * 179.97438 * 16 15 12 18 18 O 1.21528 * 119.99560 * 0.02562 * 17 16 15 19 19 C 1.48002 * 120.00073 * 180.02562 * 17 16 15 20 20 C 1.39868 * 120.46002 * 180.02562 * 19 17 16 21 21 C 1.38454 * 118.35423 * 179.97438 * 20 19 17 22 22 C 1.39301 * 119.18969 * 359.97438 * 21 20 19 23 23 C 1.48338 * 119.57050 * 179.97438 * 22 21 20 24 24 N 1.34779 * 119.99951 * 179.97438 * 23 22 21 25 25 O 1.21490 * 119.99861 * 0.02562 * 23 22 21 26 26 N 1.32719 * 120.85994 * 0.02562 * 22 21 20 27 27 C 1.31415 * 121.79912 * 359.97438 * 26 22 21 28 28 H 1.09000 * 109.46958 * 300.00049 * 1 2 3 29 29 H 1.09003 * 109.46667 * 59.99911 * 1 2 3 30 30 H 1.08994 * 109.47270 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.46958 * 239.99951 * 2 1 3 32 32 H 1.09003 * 109.46667 * 120.00089 * 2 1 3 33 33 H 0.96997 * 120.00293 * 179.97438 * 7 6 4 34 34 H 1.09002 * 109.47466 * 59.99768 * 14 12 3 35 35 H 1.09003 * 109.47430 * 179.97438 * 14 12 3 36 36 H 1.09006 * 109.46846 * 299.99498 * 14 12 3 37 37 H 1.09005 * 109.47294 * 185.00617 * 15 12 3 38 38 H 1.08994 * 109.47702 * 65.00084 * 15 12 3 39 39 H 0.97003 * 119.99202 * 0.02562 * 16 15 12 40 40 H 1.07992 * 120.82182 * 0.27716 * 20 19 17 41 41 H 1.07997 * 120.40745 * 179.97438 * 21 20 19 42 42 H 0.96999 * 120.00197 * 0.02562 * 24 23 22 43 43 H 0.97001 * 119.99523 * 180.02562 * 24 23 22 44 44 H 1.08001 * 119.63916 * 180.02562 * 27 26 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1350 2.0661 -1.1799 5 1 1.4371 1.8810 -1.9830 6 6 3.1501 2.9986 -1.3437 7 7 4.1872 2.9917 -0.5333 8 14 3.0445 4.2633 -2.7145 9 1 1.7887 4.0593 -3.4805 10 1 3.0523 5.6284 -2.1301 11 1 4.2087 4.1071 -3.6230 12 6 2.3820 2.0295 1.2624 13 1 2.7189 3.0470 1.0644 14 6 3.5077 1.2413 1.9349 15 6 1.1630 2.0666 2.1863 16 7 0.0466 2.7172 1.4959 17 6 -1.1390 2.8628 2.1202 18 8 -1.2817 2.4548 3.2560 19 6 -2.2670 3.5196 1.4224 20 6 -3.5013 3.6762 2.0613 21 6 -4.5264 4.2973 1.3682 22 6 -4.2956 4.7422 0.0685 23 6 -5.3880 5.4083 -0.6821 24 7 -5.1740 5.8426 -1.9399 25 8 -6.4753 5.5631 -0.1627 26 7 -3.1113 4.5771 -0.5074 27 6 -2.1133 3.9927 0.1167 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 4.8968 3.6430 -0.6480 34 1 4.3762 1.2148 1.2767 35 1 3.7786 1.7239 2.8739 36 1 3.1707 0.2237 2.1329 37 1 1.4080 2.6268 3.0888 38 1 0.8801 1.0491 2.4558 39 1 0.1605 3.0425 0.5892 40 1 -3.6496 3.3258 3.0720 41 1 -5.4931 4.4352 1.8295 42 1 -4.3058 5.7193 -2.3545 43 1 -5.8883 6.2785 -2.4306 44 1 -1.1640 3.8769 -0.3851 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001157298310.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:46:23 Heat of formation + Delta-G solvation = -18.952045 kcal Electronic energy + Delta-G solvation = -27469.292773 eV Core-core repulsion = 23615.273497 eV Total energy + Delta-G solvation = -3854.019275 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.94886 -39.55776 -38.52710 -36.98186 -34.10304 -33.93731 -32.56757 -32.07085 -31.84303 -30.85083 -28.25885 -26.50651 -24.65667 -24.00314 -23.78128 -21.84438 -21.53443 -20.27497 -19.39766 -18.53939 -17.71176 -17.37391 -16.85417 -16.35836 -15.42842 -15.35730 -15.18442 -14.95073 -14.87121 -14.53579 -14.24862 -13.82660 -13.46555 -13.43467 -13.21273 -12.78307 -12.73900 -12.41318 -12.20636 -11.91663 -11.59127 -11.14378 -11.01462 -10.88778 -10.79271 -10.69890 -10.34631 -10.20055 -10.16741 -10.07376 -9.97581 -9.72219 -9.57279 -9.51328 -9.44791 -8.62522 -8.55025 -6.75538 -5.96290 -3.45531 0.10988 0.97228 2.28097 3.08523 3.12230 3.24887 3.35375 3.36077 3.43636 3.77025 3.93381 4.34790 4.59891 4.60447 4.71662 4.91726 5.00415 5.18737 5.31069 5.43097 5.71047 5.78970 5.87987 5.98222 6.08780 6.17041 6.22839 6.30113 6.39671 6.46022 6.47224 6.53256 6.60653 6.76465 6.84273 6.87845 6.99093 7.08860 7.39291 7.44800 7.49763 7.70204 7.90537 7.94321 8.34689 8.46037 9.08001 9.69196 10.26494 11.10222 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.012619 B = 0.004145 C = 0.003429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2218.414058 B = 6752.868862 C = 8164.545407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.140 3.860 3 N -0.583 5.583 4 C -0.266 4.266 5 H 0.066 0.934 6 C 0.013 3.987 7 N -0.889 5.889 8 Si 0.893 3.107 9 H -0.275 1.275 10 H -0.288 1.288 11 H -0.290 1.290 12 C 0.176 3.824 13 H 0.101 0.899 14 C -0.145 4.145 15 C 0.100 3.900 16 N -0.689 5.689 17 C 0.550 3.450 18 O -0.547 6.547 19 C -0.152 4.152 20 C -0.026 4.026 21 C -0.119 4.119 22 C 0.085 3.915 23 C 0.580 3.420 24 N -0.834 5.834 25 O -0.537 6.537 26 N -0.460 5.460 27 C 0.136 3.864 28 H 0.050 0.950 29 H 0.046 0.954 30 H 0.033 0.967 31 H 0.041 0.959 32 H 0.037 0.963 33 H 0.255 0.745 34 H 0.079 0.921 35 H 0.033 0.967 36 H 0.030 0.970 37 H 0.057 0.943 38 H 0.058 0.942 39 H 0.411 0.589 40 H 0.155 0.845 41 H 0.154 0.846 42 H 0.414 0.586 43 H 0.405 0.595 44 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.573 2.537 0.867 11.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.014 3.986 3 N -0.305 5.305 4 C -0.396 4.396 5 H 0.083 0.917 6 C -0.187 4.187 7 N -0.531 5.531 8 Si 0.723 3.277 9 H -0.200 1.200 10 H -0.215 1.215 11 H -0.217 1.217 12 C 0.068 3.932 13 H 0.119 0.881 14 C -0.204 4.204 15 C -0.025 4.025 16 N -0.340 5.340 17 C 0.334 3.666 18 O -0.427 6.427 19 C -0.157 4.157 20 C -0.053 4.053 21 C -0.140 4.140 22 C -0.054 4.054 23 C 0.363 3.637 24 N -0.397 5.397 25 O -0.414 6.414 26 N -0.171 5.171 27 C -0.025 4.025 28 H 0.069 0.931 29 H 0.066 0.934 30 H 0.052 0.948 31 H 0.060 0.940 32 H 0.055 0.945 33 H 0.065 0.935 34 H 0.098 0.902 35 H 0.052 0.948 36 H 0.049 0.951 37 H 0.075 0.925 38 H 0.076 0.924 39 H 0.249 0.751 40 H 0.173 0.827 41 H 0.171 0.829 42 H 0.245 0.755 43 H 0.236 0.764 44 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -12.003 2.671 1.260 12.361 hybrid contribution 0.253 0.585 -0.781 1.008 sum -11.750 3.256 0.479 12.202 Atomic orbital electron populations 1.22455 1.00067 0.99123 1.01393 1.20763 0.91609 0.87437 0.98825 1.43916 1.76011 1.08312 1.02271 1.19131 1.08808 1.18239 0.93421 0.91680 1.25166 0.94489 1.01332 0.97731 1.70008 1.07814 1.35838 1.39446 0.86380 0.77805 0.81580 0.81951 1.20001 1.21473 1.21666 1.20508 0.88805 0.99658 0.84192 0.88139 1.22023 1.01091 0.97973 0.99296 1.22279 0.87822 0.96436 0.95941 1.45945 1.10697 1.58271 1.19051 1.18000 0.82697 0.79873 0.85979 1.90744 1.83175 1.50751 1.18045 1.21404 0.96179 1.01699 0.96421 1.21782 0.90415 0.92556 1.00539 1.22092 1.00933 0.96878 0.94076 1.21226 0.92339 0.98723 0.93063 1.17894 0.86297 0.77683 0.81846 1.43652 1.18939 1.61661 1.15438 1.90824 1.24679 1.56960 1.68891 1.67539 0.99401 1.13229 1.36907 1.23154 0.97616 0.91017 0.90687 0.93120 0.93436 0.94781 0.94035 0.94472 0.93523 0.90212 0.94779 0.95083 0.92514 0.92413 0.75101 0.82701 0.82856 0.75490 0.76399 0.80913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.90 9.87 37.16 0.37 -2.53 16 2 C 0.14 2.66 5.67 -4.04 -0.02 2.64 16 3 N -0.58 -12.25 1.85 -165.67 -0.31 -12.55 16 4 C -0.27 -6.19 9.26 -15.06 -0.14 -6.33 16 5 H 0.07 1.53 7.89 -52.49 -0.41 1.11 16 6 C 0.01 0.32 4.85 -17.43 -0.08 0.24 16 7 N -0.89 -22.50 10.60 55.49 0.59 -21.91 16 8 Si 0.89 19.25 29.59 -169.99 -5.03 14.23 16 9 H -0.28 -5.78 7.11 56.52 0.40 -5.38 16 10 H -0.29 -6.30 7.11 56.52 0.40 -5.89 16 11 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 12 C 0.18 3.51 1.92 -67.93 -0.13 3.38 16 13 H 0.10 2.29 6.04 -51.93 -0.31 1.98 16 14 C -0.14 -2.79 9.05 37.16 0.34 -2.45 16 15 C 0.10 1.78 4.34 -4.04 -0.02 1.76 16 16 N -0.69 -11.38 3.94 -61.20 -0.24 -11.62 16 17 C 0.55 8.92 7.55 -12.26 -0.09 8.83 16 18 O -0.55 -10.30 16.41 5.34 0.09 -10.21 16 19 C -0.15 -2.08 5.90 -104.73 -0.62 -2.70 16 20 C -0.03 -0.32 9.71 -38.89 -0.38 -0.70 16 21 C -0.12 -1.37 9.62 -39.11 -0.38 -1.75 16 22 C 0.08 1.04 6.75 -82.93 -0.56 0.48 16 23 C 0.58 6.91 8.09 -12.10 -0.10 6.81 16 24 N -0.83 -7.06 8.86 30.64 0.27 -6.79 16 25 O -0.54 -7.79 17.15 5.37 0.09 -7.70 16 26 N -0.46 -5.77 9.52 -9.48 -0.09 -5.86 16 27 C 0.14 1.77 10.71 -17.17 -0.18 1.59 16 28 H 0.05 0.88 4.99 -51.93 -0.26 0.62 16 29 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.04 0.83 8.09 -51.93 -0.42 0.41 16 32 H 0.04 0.68 6.45 -51.93 -0.33 0.35 16 33 H 0.25 6.37 8.31 -40.82 -0.34 6.03 16 34 H 0.08 1.77 7.39 -51.93 -0.38 1.39 16 35 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.03 0.55 6.67 -51.93 -0.35 0.21 16 37 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 38 H 0.06 1.05 7.05 -51.93 -0.37 0.68 16 39 H 0.41 6.80 5.96 -40.82 -0.24 6.56 16 40 H 0.16 1.73 7.73 -52.49 -0.41 1.32 16 41 H 0.15 1.55 7.63 -52.49 -0.40 1.15 16 42 H 0.41 3.13 8.15 -40.82 -0.33 2.80 16 43 H 0.40 2.58 8.93 -40.82 -0.36 2.22 16 44 H 0.17 2.16 6.41 -52.49 -0.34 1.83 16 LS Contribution 362.77 15.07 5.47 5.47 Total: -1.00 -28.33 362.77 -6.90 -35.23 By element: Atomic # 1 Polarization: 18.22 SS G_CDS: -5.75 Total: 12.48 kcal Atomic # 6 Polarization: 11.26 SS G_CDS: -2.00 Total: 9.26 kcal Atomic # 7 Polarization: -58.97 SS G_CDS: 0.22 Total: -58.74 kcal Atomic # 8 Polarization: -18.09 SS G_CDS: 0.18 Total: -17.91 kcal Atomic # 14 Polarization: 19.25 SS G_CDS: -5.03 Total: 14.23 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -28.33 -6.90 -35.23 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157298310.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.278 kcal (2) G-P(sol) polarization free energy of solvation -28.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.230 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds