Wall clock time and date at job start Tue Mar 31 2020 13:46:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46501 * 109.46866 * 2 1 4 4 C 1.36934 * 119.99691 * 274.04076 * 3 2 1 5 5 H 1.08001 * 119.99980 * 174.71255 * 4 3 2 6 6 C 1.38814 * 120.00228 * 354.70306 * 4 3 2 7 7 N 1.31617 * 119.99701 * 31.38942 * 6 4 3 8 8 Si 1.86798 * 120.00149 * 211.39051 * 6 4 3 9 9 H 1.48496 * 109.47420 * 84.99441 * 8 6 4 10 10 H 1.48503 * 109.46781 * 204.99858 * 8 6 4 11 11 H 1.48503 * 109.47022 * 324.99314 * 8 6 4 12 12 C 1.46499 * 120.00204 * 94.03590 * 3 2 1 13 13 H 1.09000 * 109.47441 * 180.02562 * 12 3 2 14 14 C 1.53002 * 109.47122 * 60.00059 * 12 3 2 15 15 C 1.53004 * 109.47391 * 300.00175 * 12 3 2 16 16 N 1.46499 * 109.46640 * 304.99935 * 15 12 3 17 17 C 1.34784 * 119.99678 * 180.02562 * 16 15 12 18 18 O 1.21517 * 119.99755 * 359.97438 * 17 16 15 19 19 C 1.48159 * 119.99853 * 180.02562 * 17 16 15 20 20 C 1.39251 * 119.65616 * 180.02562 * 19 17 16 21 21 C 1.39758 * 118.90346 * 180.27358 * 20 19 17 22 22 C 1.48144 * 120.88888 * 179.71844 * 21 20 19 23 23 N 1.34776 * 119.99958 * 179.97438 * 22 21 20 24 24 O 1.21515 * 120.00070 * 0.02562 * 22 21 20 25 25 C 1.39805 * 118.22006 * 359.44329 * 21 20 19 26 26 C 1.38502 * 119.19254 * 0.60010 * 25 21 20 27 27 N 1.31467 * 121.02845 * 359.65973 * 26 25 21 28 28 H 1.09001 * 109.47100 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.47681 * 300.00072 * 1 2 3 30 30 H 1.08998 * 109.47457 * 60.00371 * 1 2 3 31 31 H 1.08993 * 109.47274 * 239.99619 * 2 1 3 32 32 H 1.09002 * 109.46774 * 119.99433 * 2 1 3 33 33 H 0.97006 * 119.99761 * 180.02562 * 7 6 4 34 34 H 1.09000 * 109.46894 * 59.99705 * 14 12 3 35 35 H 1.08996 * 109.47472 * 180.02562 * 14 12 3 36 36 H 1.09000 * 109.46952 * 300.00287 * 14 12 3 37 37 H 1.08998 * 109.47108 * 184.99719 * 15 12 3 38 38 H 1.09001 * 109.47122 * 64.99435 * 15 12 3 39 39 H 0.96993 * 120.00253 * 359.97438 * 16 15 12 40 40 H 1.08002 * 120.55127 * 0.02562 * 20 19 17 41 41 H 0.96999 * 120.00137 * 0.02562 * 23 22 21 42 42 H 0.97000 * 119.99614 * 180.02562 * 23 22 21 43 43 H 1.08000 * 120.40468 * 180.27638 * 25 21 20 44 44 H 1.07998 * 119.48620 * 179.68149 * 26 25 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1677 2.0546 -1.1830 5 1 2.4453 3.0983 -1.1789 6 6 1.9625 1.3956 -2.3874 7 7 1.0860 0.4165 -2.4608 8 14 2.9303 1.8985 -3.9039 9 1 4.2410 1.2005 -3.9086 10 1 2.1677 1.5281 -5.1231 11 1 3.1516 3.3668 -3.8855 12 6 2.3466 2.0421 1.2655 13 1 2.6901 3.0573 1.0669 14 6 3.4516 1.2595 1.9780 15 6 1.1018 2.0902 2.1539 16 7 0.0066 2.7349 1.4252 17 6 -1.1959 2.8892 2.0142 18 8 -1.3716 2.4931 3.1495 19 6 -2.3037 3.5406 1.2770 20 6 -3.5430 3.6969 1.8927 21 6 -4.5786 4.3084 1.1808 22 6 -5.9162 4.4914 1.7907 23 7 -6.9019 5.0839 1.0881 24 8 -6.1243 4.1081 2.9249 25 6 -4.3168 4.7480 -0.1203 26 6 -3.0556 4.5528 -0.6583 27 7 -2.1050 3.9688 0.0372 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 1.8933 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 0.9429 -0.0442 -3.3024 34 1 4.3384 1.2253 1.3451 35 1 3.6956 1.7509 2.9197 36 1 3.1076 0.2445 2.1766 37 1 1.3218 2.6592 3.0572 38 1 0.8099 1.0757 2.4255 39 1 0.1469 3.0513 0.5191 40 1 -3.7024 3.3476 2.9022 41 1 -6.7356 5.3902 0.1829 42 1 -7.7775 5.2041 1.4877 43 1 -5.0901 5.2292 -0.7006 44 1 -2.8496 4.8859 -1.6648 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001157377708.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:46:12 Heat of formation + Delta-G solvation = -0.944288 kcal Electronic energy + Delta-G solvation = -27466.977020 eV Core-core repulsion = 23613.738619 eV Total energy + Delta-G solvation = -3853.238400 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.89176 -39.48682 -38.54411 -36.94760 -34.35607 -33.93037 -32.67536 -32.01940 -31.38013 -30.12561 -28.39528 -26.28730 -25.22243 -23.86621 -23.53280 -21.93054 -21.65266 -20.01509 -19.16015 -18.53724 -17.49360 -17.02447 -16.89107 -16.00382 -15.87182 -15.41385 -15.21940 -15.01006 -14.81336 -14.63577 -14.07163 -14.00968 -13.66401 -13.38995 -12.91456 -12.60356 -12.43070 -12.13187 -12.09398 -11.84938 -11.44017 -11.09876 -10.75693 -10.69439 -10.67578 -10.58085 -10.27313 -10.17714 -10.10118 -10.05076 -9.80357 -9.59996 -9.44874 -9.36188 -9.24788 -8.43483 -8.19479 -6.98464 -5.81307 -3.01605 0.34551 0.74612 2.48502 2.97214 3.07575 3.40347 3.48900 3.51094 3.52284 3.92624 4.22292 4.30042 4.49601 4.54835 4.71589 4.84011 5.23340 5.25825 5.42518 5.49799 5.57324 5.63362 5.75559 5.93739 6.09060 6.14675 6.28025 6.33531 6.34962 6.39070 6.66341 6.73699 6.86462 6.87579 7.01188 7.03777 7.16716 7.26234 7.62456 7.71549 7.81906 7.85215 8.13752 8.18069 8.33287 8.65577 9.23878 9.87706 10.32914 11.22306 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.014751 B = 0.003791 C = 0.003258 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1897.698354 B = 7383.767696 C = 8592.947798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.166 3.834 3 N -0.593 5.593 4 C -0.259 4.259 5 H 0.076 0.924 6 C 0.011 3.989 7 N -0.880 5.880 8 Si 0.879 3.121 9 H -0.291 1.291 10 H -0.296 1.296 11 H -0.283 1.283 12 C 0.161 3.839 13 H 0.069 0.931 14 C -0.158 4.158 15 C 0.101 3.899 16 N -0.675 5.675 17 C 0.561 3.439 18 O -0.549 6.549 19 C 0.091 3.909 20 C -0.060 4.060 21 C -0.105 4.105 22 C 0.567 3.433 23 N -0.848 5.848 24 O -0.527 6.527 25 C -0.127 4.127 26 C 0.101 3.899 27 N -0.425 5.425 28 H 0.012 0.988 29 H 0.018 0.982 30 H 0.088 0.912 31 H 0.084 0.916 32 H 0.006 0.994 33 H 0.251 0.749 34 H 0.059 0.941 35 H 0.045 0.955 36 H 0.052 0.948 37 H 0.057 0.943 38 H 0.065 0.935 39 H 0.423 0.577 40 H 0.160 0.840 41 H 0.402 0.598 42 H 0.408 0.592 43 H 0.142 0.858 44 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.852 9.505 3.073 14.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.041 3.959 3 N -0.316 5.316 4 C -0.387 4.387 5 H 0.094 0.906 6 C -0.187 4.187 7 N -0.524 5.524 8 Si 0.709 3.291 9 H -0.218 1.218 10 H -0.223 1.223 11 H -0.208 1.208 12 C 0.052 3.948 13 H 0.087 0.913 14 C -0.217 4.217 15 C -0.025 4.025 16 N -0.325 5.325 17 C 0.345 3.655 18 O -0.427 6.427 19 C -0.048 4.048 20 C -0.082 4.082 21 C -0.116 4.116 22 C 0.352 3.648 23 N -0.412 5.412 24 O -0.403 6.403 25 C -0.148 4.148 26 C -0.058 4.058 27 N -0.136 5.136 28 H 0.031 0.969 29 H 0.037 0.963 30 H 0.107 0.893 31 H 0.102 0.898 32 H 0.024 0.976 33 H 0.061 0.939 34 H 0.078 0.922 35 H 0.064 0.936 36 H 0.071 0.929 37 H 0.075 0.925 38 H 0.083 0.917 39 H 0.262 0.738 40 H 0.177 0.823 41 H 0.232 0.768 42 H 0.239 0.761 43 H 0.160 0.840 44 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -10.105 8.673 4.105 13.935 hybrid contribution -0.740 0.639 -1.432 1.734 sum -10.845 9.313 2.673 14.543 Atomic orbital electron populations 1.22415 0.99185 0.97878 1.01380 1.20893 0.92458 0.84514 0.98025 1.44257 1.75602 1.11211 1.00485 1.19194 1.41476 0.94779 0.83253 0.90622 1.24659 0.98715 0.98274 0.97071 1.70296 1.30426 1.26685 1.25020 0.86639 0.81281 0.77936 0.83245 1.21824 1.22288 1.20839 1.20550 0.91076 0.96526 0.86611 0.91304 1.22182 0.99670 1.00622 0.99252 1.22136 0.88157 0.97415 0.94780 1.45777 1.09723 1.57361 1.19599 1.17739 0.82515 0.79746 0.85545 1.90760 1.82632 1.51358 1.17980 1.21370 0.94033 0.98359 0.91071 1.22238 0.90859 0.93403 1.01690 1.20199 0.94462 1.01743 0.95190 1.18124 0.84247 0.77164 0.85266 1.43685 1.14750 1.63410 1.19405 1.90857 1.82440 1.49015 1.17946 1.22509 0.99144 0.98694 0.94482 1.22879 0.88118 0.94737 1.00076 1.67592 1.34673 1.05714 1.05656 0.96874 0.96308 0.89304 0.89804 0.97574 0.93872 0.92212 0.93618 0.92944 0.92500 0.91712 0.73768 0.82288 0.76822 0.76092 0.84049 0.81220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.47 9.27 37.16 0.34 -3.12 16 2 C 0.17 3.84 5.01 -4.04 -0.02 3.82 16 3 N -0.59 -13.33 1.92 -165.66 -0.32 -13.65 16 4 C -0.26 -6.42 9.38 -15.06 -0.14 -6.56 16 5 H 0.08 1.85 7.83 -52.49 -0.41 1.44 16 6 C 0.01 0.28 4.97 -17.43 -0.09 0.19 16 7 N -0.88 -23.32 8.40 55.49 0.47 -22.86 16 8 Si 0.88 20.48 29.65 -169.99 -5.04 15.44 16 9 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 10 H -0.30 -7.06 7.11 56.52 0.40 -6.66 16 11 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 12 C 0.16 3.03 2.87 -67.93 -0.19 2.83 16 13 H 0.07 1.27 7.78 -51.93 -0.40 0.87 16 14 C -0.16 -2.60 9.18 37.16 0.34 -2.26 16 15 C 0.10 1.85 4.32 -4.04 -0.02 1.83 16 16 N -0.67 -12.81 3.98 -61.15 -0.24 -13.05 16 17 C 0.56 10.69 7.56 -12.18 -0.09 10.60 16 18 O -0.55 -11.55 16.32 5.35 0.09 -11.46 16 19 C 0.09 1.50 6.75 -83.06 -0.56 0.94 16 20 C -0.06 -0.90 9.20 -38.64 -0.36 -1.26 16 21 C -0.10 -1.23 5.91 -104.68 -0.62 -1.85 16 22 C 0.57 6.35 8.07 -12.19 -0.10 6.26 16 23 N -0.85 -5.13 8.83 30.60 0.27 -4.86 16 24 O -0.53 -8.13 17.28 5.35 0.09 -8.04 16 25 C -0.13 -1.13 9.62 -38.90 -0.37 -1.50 16 26 C 0.10 1.14 11.17 -17.61 -0.20 0.94 16 27 N -0.42 -6.59 9.51 -9.85 -0.09 -6.69 16 28 H 0.01 0.28 8.14 -51.93 -0.42 -0.14 16 29 H 0.02 0.41 4.84 -51.93 -0.25 0.16 16 30 H 0.09 2.31 6.30 -51.93 -0.33 1.98 16 31 H 0.08 2.19 5.84 -51.93 -0.30 1.89 16 32 H 0.01 0.13 6.43 -51.93 -0.33 -0.20 16 33 H 0.25 6.60 8.31 -40.82 -0.34 6.26 16 34 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 35 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.05 0.88 6.66 -51.93 -0.35 0.53 16 37 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 38 H 0.06 1.28 6.92 -51.93 -0.36 0.92 16 39 H 0.42 8.52 7.22 -40.82 -0.29 8.23 16 40 H 0.16 2.54 7.33 -52.49 -0.38 2.16 16 41 H 0.40 1.19 6.97 -40.82 -0.28 0.90 16 42 H 0.41 1.90 8.93 -40.82 -0.36 1.54 16 43 H 0.14 0.58 6.53 -52.49 -0.34 0.24 16 44 H 0.17 1.42 8.06 -52.49 -0.42 1.00 16 LS Contribution 358.98 15.07 5.41 5.41 Total: -1.00 -31.98 358.98 -7.09 -39.07 By element: Atomic # 1 Polarization: 15.46 SS G_CDS: -5.65 Total: 9.80 kcal Atomic # 6 Polarization: 12.95 SS G_CDS: -2.07 Total: 10.88 kcal Atomic # 7 Polarization: -61.19 SS G_CDS: 0.08 Total: -61.11 kcal Atomic # 8 Polarization: -19.68 SS G_CDS: 0.18 Total: -19.50 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -5.04 Total: 15.44 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -31.98 -7.09 -39.07 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157377708.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.129 kcal (2) G-P(sol) polarization free energy of solvation -31.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.073 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds