Wall clock time and date at job start Tue Mar 31 2020 13:46:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46501 * 109.46866 * 2 1 4 4 C 1.36934 * 119.99691 * 274.04076 * 3 2 1 5 5 H 1.08001 * 119.99980 * 174.71255 * 4 3 2 6 6 C 1.38814 * 120.00228 * 354.70306 * 4 3 2 7 7 N 1.31617 * 119.99701 * 31.38942 * 6 4 3 8 8 Si 1.86798 * 120.00149 * 211.39051 * 6 4 3 9 9 H 1.48496 * 109.47420 * 84.99441 * 8 6 4 10 10 H 1.48503 * 109.46781 * 204.99858 * 8 6 4 11 11 H 1.48503 * 109.47022 * 324.99314 * 8 6 4 12 12 C 1.46499 * 120.00204 * 94.03590 * 3 2 1 13 13 H 1.09000 * 109.47441 * 180.02562 * 12 3 2 14 14 C 1.53002 * 109.47122 * 60.00059 * 12 3 2 15 15 C 1.53004 * 109.47391 * 300.00175 * 12 3 2 16 16 N 1.46499 * 109.46640 * 304.99935 * 15 12 3 17 17 C 1.34784 * 119.99678 * 180.02562 * 16 15 12 18 18 O 1.21517 * 119.99755 * 359.97438 * 17 16 15 19 19 C 1.48159 * 119.99853 * 180.02562 * 17 16 15 20 20 C 1.39251 * 119.65616 * 180.02562 * 19 17 16 21 21 C 1.39758 * 118.90346 * 180.27358 * 20 19 17 22 22 C 1.48144 * 120.88888 * 179.71844 * 21 20 19 23 23 N 1.34776 * 119.99958 * 179.97438 * 22 21 20 24 24 O 1.21515 * 120.00070 * 0.02562 * 22 21 20 25 25 C 1.39805 * 118.22006 * 359.44329 * 21 20 19 26 26 C 1.38502 * 119.19254 * 0.60010 * 25 21 20 27 27 N 1.31467 * 121.02845 * 359.65973 * 26 25 21 28 28 H 1.09001 * 109.47100 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.47681 * 300.00072 * 1 2 3 30 30 H 1.08998 * 109.47457 * 60.00371 * 1 2 3 31 31 H 1.08993 * 109.47274 * 239.99619 * 2 1 3 32 32 H 1.09002 * 109.46774 * 119.99433 * 2 1 3 33 33 H 0.97006 * 119.99761 * 180.02562 * 7 6 4 34 34 H 1.09000 * 109.46894 * 59.99705 * 14 12 3 35 35 H 1.08996 * 109.47472 * 180.02562 * 14 12 3 36 36 H 1.09000 * 109.46952 * 300.00287 * 14 12 3 37 37 H 1.08998 * 109.47108 * 184.99719 * 15 12 3 38 38 H 1.09001 * 109.47122 * 64.99435 * 15 12 3 39 39 H 0.96993 * 120.00253 * 359.97438 * 16 15 12 40 40 H 1.08002 * 120.55127 * 0.02562 * 20 19 17 41 41 H 0.96999 * 120.00137 * 0.02562 * 23 22 21 42 42 H 0.97000 * 119.99614 * 180.02562 * 23 22 21 43 43 H 1.08000 * 120.40468 * 180.27638 * 25 21 20 44 44 H 1.07998 * 119.48620 * 179.68149 * 26 25 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1677 2.0546 -1.1830 5 1 2.4453 3.0983 -1.1789 6 6 1.9625 1.3956 -2.3874 7 7 1.0860 0.4165 -2.4608 8 14 2.9303 1.8985 -3.9039 9 1 4.2410 1.2005 -3.9086 10 1 2.1677 1.5281 -5.1231 11 1 3.1516 3.3668 -3.8855 12 6 2.3466 2.0421 1.2655 13 1 2.6901 3.0573 1.0669 14 6 3.4516 1.2595 1.9780 15 6 1.1018 2.0902 2.1539 16 7 0.0066 2.7349 1.4252 17 6 -1.1959 2.8892 2.0142 18 8 -1.3716 2.4931 3.1495 19 6 -2.3037 3.5406 1.2770 20 6 -3.5430 3.6969 1.8927 21 6 -4.5786 4.3084 1.1808 22 6 -5.9162 4.4914 1.7907 23 7 -6.9019 5.0839 1.0881 24 8 -6.1243 4.1081 2.9249 25 6 -4.3168 4.7480 -0.1203 26 6 -3.0556 4.5528 -0.6583 27 7 -2.1050 3.9688 0.0372 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 1.8933 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 0.9429 -0.0442 -3.3024 34 1 4.3384 1.2253 1.3451 35 1 3.6956 1.7509 2.9197 36 1 3.1076 0.2445 2.1766 37 1 1.3218 2.6592 3.0572 38 1 0.8099 1.0757 2.4255 39 1 0.1469 3.0513 0.5191 40 1 -3.7024 3.3476 2.9022 41 1 -6.7356 5.3902 0.1829 42 1 -7.7775 5.2041 1.4877 43 1 -5.0901 5.2292 -0.7006 44 1 -2.8496 4.8859 -1.6648 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001157377708.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:46:11 Heat of formation + Delta-G solvation = -24.916743 kcal Electronic energy + Delta-G solvation = -27468.016543 eV Core-core repulsion = 23613.738619 eV Total energy + Delta-G solvation = -3854.277924 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -41.94089 -40.67425 -39.73170 -38.60224 -35.58995 -35.17978 -33.94517 -33.31522 -32.48403 -31.93546 -30.20242 -27.61990 -26.22362 -25.62809 -24.78609 -23.51603 -22.85377 -21.21779 -20.76175 -19.56167 -18.75110 -18.40414 -18.10197 -17.23724 -17.06924 -16.85593 -16.44185 -16.22619 -16.02919 -15.81071 -15.68741 -15.11485 -14.95917 -14.65071 -14.56471 -14.29869 -14.06982 -13.66381 -13.51069 -13.15187 -13.09090 -12.75185 -12.54175 -12.44361 -12.36647 -12.07280 -11.66425 -11.58766 -11.40866 -11.36277 -11.17974 -11.12244 -10.79994 -10.61105 -10.41324 -10.15318 -9.90892 -8.84990 -7.75597 -4.95165 -0.62606 -0.28654 1.45585 1.53687 1.60847 1.63761 1.92683 2.05878 2.35998 2.61362 2.80055 3.12563 3.33349 3.53342 3.66872 3.73520 3.76597 3.84651 4.06891 4.23281 4.40454 4.58342 4.61192 4.65163 4.69002 4.77255 4.79859 4.84979 5.00993 5.13487 5.26605 5.30329 5.37101 5.39362 5.42870 5.59912 5.75433 5.75871 5.91100 6.20498 6.27027 6.40793 6.47081 6.77217 7.14643 7.17034 7.30199 8.01645 8.43978 9.26965 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.014751 B = 0.003791 C = 0.003258 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1897.698354 B = 7383.767696 C = 8592.947798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.174 3.826 3 N -0.600 5.600 4 C -0.255 4.255 5 H 0.079 0.921 6 C -0.033 4.033 7 N -0.902 5.902 8 Si 0.935 3.065 9 H -0.300 1.300 10 H -0.305 1.305 11 H -0.274 1.274 12 C 0.160 3.840 13 H 0.074 0.926 14 C -0.149 4.149 15 C 0.107 3.893 16 N -0.677 5.677 17 C 0.556 3.444 18 O -0.580 6.580 19 C 0.062 3.938 20 C -0.074 4.074 21 C -0.109 4.109 22 C 0.567 3.433 23 N -0.815 5.815 24 O -0.579 6.579 25 C -0.086 4.086 26 C 0.097 3.903 27 N -0.455 5.455 28 H 0.014 0.986 29 H 0.019 0.981 30 H 0.061 0.939 31 H 0.056 0.944 32 H 0.021 0.979 33 H 0.243 0.757 34 H 0.054 0.946 35 H 0.076 0.924 36 H 0.047 0.953 37 H 0.073 0.927 38 H 0.048 0.952 39 H 0.418 0.582 40 H 0.135 0.865 41 H 0.422 0.578 42 H 0.419 0.581 43 H 0.203 0.797 44 H 0.205 0.795 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.881 11.619 1.824 16.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.048 3.952 3 N -0.322 5.322 4 C -0.384 4.384 5 H 0.097 0.903 6 C -0.229 4.229 7 N -0.548 5.548 8 Si 0.765 3.235 9 H -0.228 1.228 10 H -0.233 1.233 11 H -0.200 1.200 12 C 0.052 3.948 13 H 0.092 0.908 14 C -0.208 4.208 15 C -0.019 4.019 16 N -0.325 5.325 17 C 0.342 3.658 18 O -0.461 6.461 19 C -0.075 4.075 20 C -0.096 4.096 21 C -0.120 4.120 22 C 0.352 3.648 23 N -0.381 5.381 24 O -0.459 6.459 25 C -0.106 4.106 26 C -0.063 4.063 27 N -0.167 5.167 28 H 0.033 0.967 29 H 0.038 0.962 30 H 0.080 0.920 31 H 0.074 0.926 32 H 0.039 0.961 33 H 0.053 0.947 34 H 0.073 0.927 35 H 0.095 0.905 36 H 0.066 0.934 37 H 0.091 0.909 38 H 0.067 0.933 39 H 0.256 0.744 40 H 0.153 0.847 41 H 0.255 0.745 42 H 0.252 0.748 43 H 0.220 0.780 44 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges -11.133 10.831 2.841 15.790 hybrid contribution -0.527 0.091 -1.097 1.221 sum -11.661 10.922 1.744 16.071 Atomic orbital electron populations 1.22202 0.99360 0.97499 0.99955 1.20684 0.92129 0.85063 0.97274 1.44359 1.75638 1.10907 1.01340 1.19420 1.39938 0.94958 0.84051 0.90330 1.25148 0.99589 0.99070 0.99087 1.70430 1.31585 1.27961 1.24851 0.85759 0.79366 0.77778 0.80560 1.22779 1.23269 1.19962 1.20746 0.91799 0.96866 0.85352 0.90777 1.22068 0.98236 1.00214 1.00274 1.22069 0.87773 0.96802 0.95233 1.45793 1.10064 1.57421 1.19251 1.18205 0.83054 0.79216 0.85369 1.90719 1.83232 1.52816 1.19338 1.20902 0.93660 1.00921 0.92030 1.22089 0.91627 0.94715 1.01173 1.20341 0.94038 1.01418 0.96203 1.18087 0.84693 0.77244 0.84790 1.43433 1.13977 1.60907 1.19785 1.90845 1.83160 1.51615 1.20276 1.23064 0.99436 0.95289 0.92856 1.23601 0.88251 0.93480 1.01006 1.67511 1.36871 1.06943 1.05386 0.96720 0.96176 0.91990 0.92609 0.96073 0.94735 0.92675 0.90526 0.93441 0.90900 0.93321 0.74411 0.84677 0.74509 0.74777 0.78009 0.77841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.20 9.27 71.98 0.67 -5.54 16 2 C 0.17 8.14 5.01 86.38 0.43 8.57 16 3 N -0.60 -26.91 1.92 -678.03 -1.30 -28.21 16 4 C -0.25 -12.56 9.38 84.03 0.79 -11.77 16 5 H 0.08 3.78 7.83 -2.91 -0.02 3.76 16 6 C -0.03 -1.70 4.97 84.86 0.42 -1.28 16 7 N -0.90 -48.64 8.40 21.65 0.18 -48.46 16 8 Si 0.93 42.34 29.65 68.60 2.03 44.37 16 9 H -0.30 -13.91 7.11 99.48 0.71 -13.20 16 10 H -0.31 -14.18 7.11 99.48 0.71 -13.47 16 11 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 12 C 0.16 5.87 2.87 44.99 0.13 6.00 16 13 H 0.07 2.65 7.78 -2.39 -0.02 2.63 16 14 C -0.15 -4.65 9.18 71.98 0.66 -3.99 16 15 C 0.11 3.91 4.32 86.38 0.37 4.29 16 16 N -0.68 -26.26 3.98 -465.65 -1.85 -28.12 16 17 C 0.56 22.10 7.56 86.88 0.66 22.76 16 18 O -0.58 -25.69 16.32 -3.77 -0.06 -25.75 16 19 C 0.06 2.10 6.75 41.90 0.28 2.38 16 20 C -0.07 -2.28 9.20 22.88 0.21 -2.07 16 21 C -0.11 -2.36 5.91 -19.90 -0.12 -2.48 16 22 C 0.57 11.69 8.07 86.87 0.70 12.39 16 23 N -0.82 -6.76 8.83 -175.40 -1.55 -8.31 16 24 O -0.58 -17.95 17.28 -3.76 -0.07 -18.01 16 25 C -0.09 -1.17 9.62 22.71 0.22 -0.95 16 26 C 0.10 1.89 11.17 84.81 0.95 2.83 16 27 N -0.46 -13.89 9.51 -185.08 -1.76 -15.65 16 28 H 0.01 0.64 8.14 -2.39 -0.02 0.62 16 29 H 0.02 0.91 4.84 -2.39 -0.01 0.90 16 30 H 0.06 3.30 6.30 -2.39 -0.02 3.28 16 31 H 0.06 2.97 5.84 -2.39 -0.01 2.95 16 32 H 0.02 0.92 6.43 -2.39 -0.02 0.90 16 33 H 0.24 13.06 8.31 -92.70 -0.77 12.29 16 34 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 35 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 36 H 0.05 1.53 6.66 -2.39 -0.02 1.51 16 37 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 38 H 0.05 1.94 6.92 -2.39 -0.02 1.92 16 39 H 0.42 17.15 7.22 -92.71 -0.67 16.48 16 40 H 0.14 4.73 7.33 -2.91 -0.02 4.70 16 41 H 0.42 0.15 6.97 -92.71 -0.65 -0.50 16 42 H 0.42 2.44 8.93 -92.71 -0.83 1.62 16 43 H 0.20 0.20 6.53 -2.91 -0.02 0.18 16 44 H 0.20 2.50 8.06 -2.91 -0.02 2.47 16 Total: -1.00 -74.02 358.98 0.94 -73.08 By element: Atomic # 1 Polarization: 24.98 SS G_CDS: -1.06 Total: 23.91 kcal Atomic # 6 Polarization: 24.78 SS G_CDS: 6.37 Total: 31.15 kcal Atomic # 7 Polarization: -122.47 SS G_CDS: -6.28 Total: -128.75 kcal Atomic # 8 Polarization: -43.64 SS G_CDS: -0.13 Total: -43.76 kcal Atomic # 14 Polarization: 42.34 SS G_CDS: 2.03 Total: 44.37 kcal Total: -74.02 0.94 -73.08 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157377708.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.165 kcal (2) G-P(sol) polarization free energy of solvation -74.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.082 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds