Wall clock time and date at job start Tue Mar 31 2020 14:00:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.45195 * 109.46805 * 2 1 4 4 C 1.34232 * 117.00063 * 180.02562 * 3 2 1 5 5 O 1.20822 * 119.99509 * 359.97438 * 4 3 2 6 6 C 1.50698 * 120.00410 * 180.02562 * 4 3 2 7 7 N 1.46897 * 109.47410 * 186.29413 * 6 4 3 8 8 C 1.46953 * 111.00159 * 66.06576 * 7 6 4 9 9 C 1.53052 * 109.36685 * 183.19014 * 8 7 6 10 10 N 1.46954 * 109.36395 * 301.60335 * 9 8 7 11 11 C 1.38831 * 111.00099 * 183.18444 * 10 9 8 12 12 C 1.39958 * 119.96797 * 359.97438 * 11 10 9 13 13 N 1.32134 * 120.32013 * 180.02562 * 12 11 10 14 14 C 1.31931 * 120.26888 * 359.70476 * 13 12 11 15 15 C 1.40685 * 119.93270 * 0.57076 * 14 13 12 16 16 C 1.41264 * 120.15597 * 179.70337 * 15 14 13 17 17 H 1.08000 * 119.99650 * 153.95611 * 16 15 14 18 18 C 1.40055 * 120.00087 * 333.95422 * 16 15 14 19 19 N 1.30726 * 119.99825 * 335.48389 * 18 16 15 20 20 Si 1.86804 * 120.00011 * 155.20931 * 18 16 15 21 21 H 1.48504 * 109.46933 * 180.27469 * 20 18 16 22 22 H 1.48501 * 109.46729 * 300.27526 * 20 18 16 23 23 H 1.48496 * 109.47101 * 60.27519 * 20 18 16 24 24 N 1.32234 * 119.97089 * 179.97438 * 11 10 9 25 25 C 1.46953 * 110.88317 * 59.31621 * 10 9 8 26 26 C 1.46954 * 111.00099 * 189.87072 * 7 6 4 27 27 H 1.08997 * 109.47217 * 300.00032 * 1 2 3 28 28 H 1.09008 * 109.47595 * 59.99834 * 1 2 3 29 29 H 1.09001 * 109.46931 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.46945 * 240.00700 * 2 1 3 31 31 H 1.08994 * 109.47055 * 120.00028 * 2 1 3 32 32 H 1.08996 * 109.47271 * 66.28462 * 6 4 3 33 33 H 1.09003 * 109.46652 * 306.29167 * 6 4 3 34 34 H 1.09004 * 109.48813 * 63.22223 * 8 7 6 35 35 H 1.09001 * 109.49250 * 303.15895 * 8 7 6 36 36 H 1.08990 * 109.49096 * 181.63187 * 9 8 7 37 37 H 1.09005 * 109.50513 * 61.57657 * 9 8 7 38 38 H 1.08004 * 119.84168 * 0.02562 * 12 11 10 39 39 H 1.07999 * 120.03187 * 180.29874 * 14 13 12 40 40 H 0.96995 * 120.00327 * 353.83674 * 19 18 16 41 41 H 1.09004 * 109.48813 * 60.64998 * 25 10 9 42 42 H 1.09001 * 109.49250 * 180.71327 * 25 10 9 43 43 H 1.08997 * 109.48810 * 296.77239 * 26 7 6 44 44 H 1.08998 * 109.49048 * 56.84337 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3689 0.0000 4 6 3.3447 1.5449 -0.0005 5 8 4.0806 0.5867 -0.0005 6 6 3.9207 2.9375 0.0000 7 7 5.3798 2.8639 -0.1526 8 6 5.7452 2.3355 -1.4742 9 6 7.2671 2.2000 -1.5636 10 7 7.8874 3.5124 -1.3344 11 6 9.2665 3.4428 -1.4785 12 6 9.8751 2.2246 -1.8015 13 7 11.1871 2.1504 -1.9398 14 6 11.9345 3.2259 -1.7803 15 6 11.3347 4.4548 -1.4499 16 6 12.1311 5.6079 -1.2719 17 1 11.7072 6.5876 -1.4362 18 6 13.4704 5.4808 -0.8823 19 7 13.8641 4.4163 -0.2337 20 14 14.6955 6.8289 -1.2961 21 1 16.0373 6.4529 -0.7827 22 1 14.7602 7.0036 -2.7694 23 1 14.2629 8.1016 -0.6652 24 7 10.0037 4.5277 -1.3106 25 6 7.5220 4.0408 -0.0128 26 6 6.0001 4.1763 0.0766 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8933 -0.5137 -0.8900 31 1 1.8933 -0.5138 0.8899 32 1 3.6781 3.4306 0.9413 33 1 3.4970 3.5061 -0.8278 34 1 5.3948 3.0181 -2.2484 35 1 5.2842 1.3579 -1.6152 36 1 7.5422 1.8356 -2.5533 37 1 7.6149 1.4963 -0.8073 38 1 9.2695 1.3409 -1.9383 39 1 13.0060 3.1619 -1.8990 40 1 13.2144 3.7569 0.0562 41 1 7.8725 3.3582 0.7614 42 1 7.9830 5.0184 0.1282 43 1 5.6527 4.8798 -0.6799 44 1 5.7250 4.5407 1.0664 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001163800708.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:00:54 Heat of formation + Delta-G solvation = -26.336965 kcal Electronic energy + Delta-G solvation = -26619.436834 eV Core-core repulsion = 22765.097325 eV Total energy + Delta-G solvation = -3854.339509 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.81966 -39.93434 -38.52902 -36.87773 -35.49875 -34.17061 -32.46540 -32.12697 -30.95766 -29.96710 -28.11397 -26.07672 -25.18640 -23.86724 -23.32603 -21.86509 -21.68919 -21.10074 -19.83643 -18.23868 -17.92149 -17.00289 -16.68960 -16.48626 -16.07797 -15.54167 -15.06820 -14.94568 -14.58404 -14.43961 -14.25120 -14.14565 -13.89101 -13.43215 -13.22711 -13.09523 -12.92031 -12.51670 -12.11897 -12.02417 -11.96896 -11.91023 -11.60679 -11.27191 -11.15121 -11.08157 -10.89154 -10.81619 -10.48759 -10.43499 -10.24697 -9.97449 -9.88847 -9.37925 -8.83506 -8.53802 -7.55543 -7.50798 -7.22831 -4.82859 2.01199 2.26189 2.31892 2.72546 3.08508 3.18109 3.30410 3.69502 3.85662 4.04196 4.40196 4.40791 4.55194 4.62188 4.76496 4.89755 4.90626 4.96814 5.10317 5.29789 5.32748 5.35196 5.38261 5.40450 5.48723 5.57148 5.61177 5.77823 5.82173 5.97395 5.99385 6.10493 6.15703 6.18143 6.29455 6.56212 6.70772 6.72607 6.84482 7.26520 7.29569 7.50249 7.59335 7.68771 7.79437 8.28448 8.51119 9.05941 9.52736 9.79079 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.038405 B = 0.002319 C = 0.002238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 728.903100 B =12073.535527 C =12507.299123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.062 3.938 3 O -0.364 6.364 4 C 0.459 3.541 5 O -0.485 6.485 6 C 0.065 3.935 7 N -0.528 5.528 8 C 0.054 3.946 9 C 0.063 3.937 10 N -0.478 5.478 11 C 0.300 3.700 12 C -0.151 4.151 13 N -0.410 5.410 14 C -0.069 4.069 15 C 0.227 3.773 16 C -0.472 4.472 17 H 0.089 0.911 18 C 0.038 3.962 19 N -0.777 5.777 20 Si 1.076 2.924 21 H -0.271 1.271 22 H -0.271 1.271 23 H -0.272 1.272 24 N -0.541 5.541 25 C 0.072 3.928 26 C 0.061 3.939 27 H 0.066 0.934 28 H 0.066 0.934 29 H 0.079 0.921 30 H 0.069 0.931 31 H 0.070 0.930 32 H 0.118 0.882 33 H 0.077 0.923 34 H 0.043 0.957 35 H 0.090 0.910 36 H 0.087 0.913 37 H 0.056 0.944 38 H 0.133 0.867 39 H 0.145 0.855 40 H 0.300 0.700 41 H 0.045 0.955 42 H 0.099 0.901 43 H 0.049 0.951 44 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.993 -2.657 1.698 21.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.011 4.011 3 O -0.281 6.281 4 C 0.301 3.699 5 O -0.370 6.370 6 C -0.064 4.064 7 N -0.255 5.255 8 C -0.074 4.074 9 C -0.065 4.065 10 N -0.197 5.197 11 C 0.060 3.940 12 C -0.311 4.311 13 N -0.122 5.122 14 C -0.240 4.240 15 C 0.100 3.900 16 C -0.505 4.505 17 H 0.107 0.893 18 C -0.186 4.186 19 N -0.400 5.400 20 Si 0.898 3.102 21 H -0.195 1.195 22 H -0.196 1.196 23 H -0.198 1.198 24 N -0.264 5.264 25 C -0.055 4.055 26 C -0.066 4.066 27 H 0.085 0.915 28 H 0.085 0.915 29 H 0.098 0.902 30 H 0.088 0.912 31 H 0.088 0.912 32 H 0.136 0.864 33 H 0.094 0.906 34 H 0.061 0.939 35 H 0.108 0.892 36 H 0.105 0.895 37 H 0.074 0.926 38 H 0.151 0.849 39 H 0.162 0.838 40 H 0.114 0.886 41 H 0.064 0.936 42 H 0.117 0.883 43 H 0.067 0.933 44 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -19.254 -2.665 1.840 19.524 hybrid contribution -1.779 -0.693 -0.201 1.920 sum -21.033 -3.357 1.639 21.362 Atomic orbital electron populations 1.21808 0.92617 1.02997 1.03509 1.23009 0.95287 0.80134 1.02705 1.86482 1.24692 1.32544 1.84416 1.23628 0.80427 0.92853 0.73042 1.90685 1.60082 1.42750 1.43517 1.21546 0.89455 0.90539 1.04896 1.61847 1.05685 1.26326 1.31598 1.22358 0.96133 1.00674 0.88198 1.22206 0.92470 0.89475 1.02317 1.58601 1.06842 1.24834 1.29443 1.20395 0.88177 0.91185 0.94283 1.22686 0.91935 0.96296 1.20186 1.67672 1.05511 1.31341 1.07656 1.23398 1.00041 0.90520 1.10016 1.19227 0.87883 0.93806 0.89123 1.20410 0.95934 0.94467 1.39686 0.89317 1.27311 0.98538 1.00782 0.92001 1.70436 1.41105 1.07879 1.20618 0.83480 0.75076 0.73781 0.77889 1.19532 1.19609 1.19756 1.68586 1.06455 1.27541 1.23836 1.22105 0.93545 1.01797 0.88057 1.22263 0.94598 0.88293 1.01476 0.91464 0.91483 0.90221 0.91223 0.91171 0.86408 0.90559 0.93888 0.89192 0.89460 0.92577 0.84944 0.83762 0.88619 0.93617 0.88319 0.93269 0.89700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.79 10.29 37.16 0.38 -0.40 16 2 C 0.06 0.49 6.19 37.16 0.23 0.72 16 3 O -0.36 -3.54 10.22 -39.26 -0.40 -3.94 16 4 C 0.46 5.17 7.52 36.00 0.27 5.44 16 5 O -0.49 -7.01 14.41 -18.75 -0.27 -7.28 16 6 C 0.06 0.62 5.56 -4.98 -0.03 0.59 16 7 N -0.53 -6.74 4.41 -235.92 -1.04 -7.78 16 8 C 0.05 0.74 5.26 -3.77 -0.02 0.72 16 9 C 0.06 1.04 4.28 -3.77 -0.02 1.03 16 10 N -0.48 -9.21 4.78 -172.88 -0.83 -10.04 16 11 C 0.30 7.09 6.45 -155.02 -1.00 6.09 16 12 C -0.15 -3.62 10.00 -16.78 -0.17 -3.79 16 13 N -0.41 -10.73 10.47 -12.11 -0.13 -10.86 16 14 C -0.07 -1.86 9.11 -16.59 -0.15 -2.01 16 15 C 0.23 6.19 6.13 -84.83 -0.52 5.67 16 16 C -0.47 -12.38 9.22 -37.75 -0.35 -12.73 16 17 H 0.09 2.29 7.96 -52.49 -0.42 1.87 16 18 C 0.04 0.93 4.95 -17.34 -0.09 0.84 16 19 N -0.78 -19.94 12.30 55.55 0.68 -19.26 16 20 Si 1.08 20.44 30.00 -169.99 -5.10 15.34 16 21 H -0.27 -5.09 7.11 56.52 0.40 -4.69 16 22 H -0.27 -4.97 7.11 56.52 0.40 -4.57 16 23 H -0.27 -4.90 7.11 56.52 0.40 -4.49 16 24 N -0.54 -14.22 9.81 -10.14 -0.10 -14.32 16 25 C 0.07 1.22 5.47 -3.77 -0.02 1.20 16 26 C 0.06 0.77 5.61 -3.77 -0.02 0.75 16 27 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 28 H 0.07 0.34 8.14 -51.92 -0.42 -0.09 16 29 H 0.08 0.29 8.14 -51.93 -0.42 -0.14 16 30 H 0.07 0.55 8.13 -51.93 -0.42 0.13 16 31 H 0.07 0.56 8.13 -51.93 -0.42 0.14 16 32 H 0.12 0.87 8.03 -51.93 -0.42 0.45 16 33 H 0.08 0.61 8.12 -51.93 -0.42 0.19 16 34 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.09 1.22 6.07 -51.93 -0.32 0.91 16 36 H 0.09 1.40 7.15 -51.93 -0.37 1.03 16 37 H 0.06 0.99 7.56 -51.93 -0.39 0.59 16 38 H 0.13 2.81 5.79 -52.48 -0.30 2.51 16 39 H 0.15 3.88 6.48 -52.49 -0.34 3.54 16 40 H 0.30 8.07 6.65 -40.82 -0.27 7.79 16 41 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 42 H 0.10 1.82 7.68 -51.93 -0.40 1.42 16 43 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 44 H 0.08 0.87 8.07 -51.93 -0.42 0.45 16 LS Contribution 358.46 15.07 5.40 5.40 Total: -1.00 -31.42 358.46 -9.52 -40.94 By element: Atomic # 1 Polarization: 13.94 SS G_CDS: -6.25 Total: 7.69 kcal Atomic # 6 Polarization: 5.60 SS G_CDS: -1.49 Total: 4.10 kcal Atomic # 7 Polarization: -60.84 SS G_CDS: -1.41 Total: -62.25 kcal Atomic # 8 Polarization: -10.56 SS G_CDS: -0.67 Total: -11.23 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -5.10 Total: 15.34 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -31.42 -9.52 -40.94 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163800708.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.600 kcal (2) G-P(sol) polarization free energy of solvation -31.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.818 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.937 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds