Wall clock time and date at job start Tue Mar 31 2020 13:54:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.45203 * 109.46857 * 2 1 4 4 C 1.34636 * 116.99599 * 180.02562 * 3 2 1 5 5 O 1.21391 * 120.00347 * 0.02562 * 4 3 2 6 6 C 1.48362 * 120.00086 * 180.02562 * 4 3 2 7 7 C 1.39112 * 120.51346 * 180.30088 * 6 4 3 8 8 C 1.39866 * 118.18186 * 180.23252 * 7 6 4 9 9 N 1.38505 * 120.51288 * 179.73628 * 8 7 6 10 10 C 1.46959 * 111.00047 * 179.72540 * 9 8 7 11 11 C 1.53058 * 109.36419 * 183.18960 * 10 9 8 12 12 N 1.46955 * 109.36051 * 301.59955 * 11 10 9 13 13 C 1.46906 * 110.99744 * 183.18754 * 12 11 10 14 14 C 1.50703 * 109.47109 * 169.99905 * 13 12 11 15 15 H 1.08005 * 119.99876 * 0.02562 * 14 13 12 16 16 C 1.37875 * 119.99989 * 180.02562 * 14 13 12 17 17 N 1.31518 * 119.99944 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 119.99979 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.47454 * 59.99696 * 18 16 14 20 20 H 1.48506 * 109.47297 * 179.97438 * 18 16 14 21 21 H 1.48503 * 109.46926 * 299.99488 * 18 16 14 22 22 C 1.46959 * 110.88319 * 59.32174 * 12 11 10 23 23 C 1.46959 * 111.00018 * 303.52642 * 9 8 7 24 24 N 1.32834 * 118.97521 * 359.46849 * 8 7 6 25 25 C 1.31854 * 120.91680 * 0.26872 * 24 8 7 26 26 N 1.31538 * 122.01486 * 0.02562 * 25 24 8 27 27 H 1.09000 * 109.47135 * 179.97438 * 1 2 3 28 28 H 1.08993 * 109.47385 * 299.99970 * 1 2 3 29 29 H 1.09002 * 109.46910 * 59.99913 * 1 2 3 30 30 H 1.09000 * 109.46662 * 240.00425 * 2 1 3 31 31 H 1.08989 * 109.47112 * 120.00383 * 2 1 3 32 32 H 1.08001 * 120.91038 * 359.97438 * 7 6 4 33 33 H 1.08995 * 109.48972 * 63.22134 * 10 9 8 34 34 H 1.08993 * 109.50763 * 303.16843 * 10 9 8 35 35 H 1.08994 * 109.48935 * 181.63483 * 11 10 9 36 36 H 1.08999 * 109.48934 * 61.56553 * 11 10 9 37 37 H 1.08992 * 109.47459 * 289.99824 * 13 12 11 38 38 H 1.09004 * 109.47040 * 49.99975 * 13 12 11 39 39 H 0.96997 * 119.99752 * 180.02562 * 17 16 14 40 40 H 1.08995 * 109.48972 * 60.64434 * 22 12 11 41 41 H 1.08998 * 109.48999 * 180.71033 * 22 12 11 42 42 H 1.08999 * 109.48803 * 296.77722 * 23 9 8 43 43 H 1.09000 * 109.48812 * 56.82359 * 23 9 8 44 44 H 1.08002 * 118.98874 * 179.97438 * 25 24 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3487 1.5454 -0.0005 5 8 4.0882 0.5827 -0.0015 6 6 3.9159 2.9163 0.0000 7 6 5.2933 3.1109 -0.0068 8 6 5.7749 4.4240 -0.0010 9 7 7.1374 4.6733 -0.0019 10 6 7.4085 6.1177 -0.0016 11 6 8.9190 6.3505 -0.0830 12 7 9.5752 5.6942 1.0564 13 6 11.0203 5.9586 1.0555 14 6 11.6185 5.4846 2.3549 15 1 10.9883 5.0318 3.1061 16 6 12.9703 5.6289 2.5847 17 7 13.7377 6.1798 1.6697 18 14 13.7120 5.0407 4.1951 19 1 13.4763 3.5823 4.3452 20 1 15.1728 5.3081 4.1942 21 1 13.0767 5.7638 5.3259 22 6 9.3041 4.2498 1.0562 23 6 7.7936 4.0170 1.1375 24 7 4.9055 5.4283 0.0000 25 6 3.6069 5.2002 0.0009 26 7 3.1131 3.9810 0.0013 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8899 32 1 5.9722 2.2710 -0.0122 33 1 7.0212 6.5602 0.9161 34 1 6.9226 6.5794 -0.8611 35 1 9.1241 7.4206 -0.0536 36 1 9.3019 5.9319 -1.0137 37 1 11.4863 5.4272 0.2258 38 1 11.1937 7.0290 0.9447 39 1 14.6888 6.2810 1.8312 40 1 9.6913 3.8073 0.1384 41 1 9.7899 3.7885 1.9159 42 1 7.4107 4.4356 2.0682 43 1 7.5882 2.9469 1.1084 44 1 2.9279 6.0400 0.0021 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001165056064.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:54:02 Heat of formation + Delta-G solvation = -9.594695 kcal Electronic energy + Delta-G solvation = -26325.306244 eV Core-core repulsion = 22471.692734 eV Total energy + Delta-G solvation = -3853.613510 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.67921 -40.51021 -38.90863 -37.04376 -35.76794 -33.61676 -32.70720 -32.01218 -31.48643 -30.70123 -28.11712 -26.43490 -25.28267 -24.28962 -23.28563 -22.87350 -21.88698 -21.28774 -19.55781 -18.89121 -18.00179 -17.09472 -16.99963 -16.39528 -16.06003 -15.80310 -15.43592 -15.15370 -14.67384 -14.61304 -14.40695 -14.25363 -13.98200 -13.83432 -13.58897 -13.30257 -13.16776 -12.37718 -12.26586 -12.01216 -11.89442 -11.45880 -11.28572 -11.22779 -11.10648 -11.05003 -10.91937 -10.90078 -10.74227 -10.55354 -10.52623 -10.22805 -9.85116 -9.62988 -9.26568 -8.61265 -8.47673 -7.37891 -6.07551 -4.09743 0.10008 0.70992 2.02972 2.09286 3.20580 3.30388 3.34969 3.37337 3.54887 3.63983 3.95171 4.37377 4.38826 4.53283 4.56096 4.57210 4.78404 4.84483 4.86556 5.09324 5.18309 5.27394 5.28763 5.31159 5.37886 5.48172 5.56415 5.58755 5.66539 5.75957 5.84647 5.95321 6.02253 6.27225 6.36546 6.40966 6.50012 6.80040 6.86847 7.19735 7.26205 7.28640 7.71503 7.80002 7.98227 8.09037 8.44808 8.96873 9.54808 11.03114 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.022128 B = 0.002408 C = 0.002237 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1265.039962 B =11625.065378 C =12511.169251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.058 3.942 3 O -0.331 6.331 4 C 0.527 3.473 5 O -0.488 6.488 6 C 0.155 3.845 7 C -0.178 4.178 8 C 0.371 3.629 9 N -0.470 5.470 10 C 0.071 3.929 11 C 0.051 3.949 12 N -0.539 5.539 13 C 0.194 3.806 14 C -0.511 4.511 15 H 0.062 0.938 16 C 0.056 3.944 17 N -0.897 5.897 18 Si 0.899 3.101 19 H -0.277 1.277 20 H -0.288 1.288 21 H -0.276 1.276 22 C 0.065 3.935 23 C 0.061 3.939 24 N -0.538 5.538 25 C 0.322 3.678 26 N -0.506 5.506 27 H 0.081 0.919 28 H 0.068 0.932 29 H 0.068 0.932 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.162 0.838 33 H 0.063 0.937 34 H 0.085 0.915 35 H 0.081 0.919 36 H 0.033 0.967 37 H -0.006 1.006 38 H 0.032 0.968 39 H 0.262 0.738 40 H 0.035 0.965 41 H 0.098 0.902 42 H 0.059 0.941 43 H 0.084 0.916 44 H 0.205 0.795 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.244 -7.725 -4.670 25.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.015 4.015 3 O -0.246 6.246 4 C 0.368 3.632 5 O -0.374 6.374 6 C 0.012 3.988 7 C -0.204 4.204 8 C 0.128 3.872 9 N -0.187 5.187 10 C -0.055 4.055 11 C -0.078 4.078 12 N -0.264 5.264 13 C 0.069 3.931 14 C -0.550 4.550 15 H 0.081 0.919 16 C -0.146 4.146 17 N -0.536 5.536 18 Si 0.727 3.273 19 H -0.203 1.203 20 H -0.213 1.213 21 H -0.202 1.202 22 C -0.064 4.064 23 C -0.064 4.064 24 N -0.259 5.259 25 C 0.033 3.967 26 N -0.225 5.225 27 H 0.099 0.901 28 H 0.087 0.913 29 H 0.087 0.913 30 H 0.091 0.909 31 H 0.091 0.909 32 H 0.180 0.820 33 H 0.082 0.918 34 H 0.103 0.897 35 H 0.100 0.900 36 H 0.051 0.949 37 H 0.011 0.989 38 H 0.050 0.950 39 H 0.072 0.928 40 H 0.053 0.947 41 H 0.116 0.884 42 H 0.078 0.922 43 H 0.102 0.898 44 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges -24.378 -7.279 -4.689 25.870 hybrid contribution 1.177 -1.101 0.510 1.690 sum -23.200 -8.379 -4.179 25.019 Atomic orbital electron populations 1.21801 0.92206 1.03041 1.03839 1.23168 0.95758 0.79690 1.02901 1.86665 1.22530 1.32364 1.83047 1.20649 0.81300 0.88082 0.73119 1.90878 1.60722 1.41101 1.44702 1.20091 0.89827 0.91167 0.97689 1.22371 0.95579 0.98737 1.03760 1.20229 0.90515 0.88629 0.87875 1.59008 1.03196 1.15501 1.40975 1.22214 0.96992 0.83527 1.02799 1.22190 0.91909 1.00220 0.93495 1.62342 1.15709 1.08678 1.39679 1.19718 0.79563 0.97031 0.96771 1.21089 0.92539 1.39737 1.01589 0.91939 1.24991 0.97165 0.95402 0.96994 1.69945 1.05562 1.44100 1.34013 0.86552 0.77895 0.79174 0.83729 1.20257 1.21348 1.20163 1.22052 0.91188 0.90939 1.02177 1.22583 0.96268 0.98472 0.89101 1.68427 1.04494 1.35909 1.17079 1.24862 0.89120 0.93298 0.89466 1.68418 1.39832 0.99286 1.14935 0.90062 0.91263 0.91293 0.90905 0.90873 0.82014 0.91832 0.89666 0.90030 0.94880 0.98858 0.94960 0.92796 0.94652 0.88416 0.92216 0.89772 0.77870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.79 10.29 37.16 0.38 -0.41 16 2 C 0.06 0.45 6.19 37.16 0.23 0.68 16 3 O -0.33 -3.60 10.07 -40.32 -0.41 -4.00 16 4 C 0.53 6.47 7.97 34.90 0.28 6.75 16 5 O -0.49 -6.67 16.20 -19.18 -0.31 -6.98 16 6 C 0.16 1.94 6.78 -82.72 -0.56 1.37 16 7 C -0.18 -2.23 8.85 -38.65 -0.34 -2.58 16 8 C 0.37 4.98 6.40 -154.86 -0.99 3.98 16 9 N -0.47 -6.81 4.73 -172.84 -0.82 -7.63 16 10 C 0.07 1.05 4.80 -3.76 -0.02 1.03 16 11 C 0.05 0.88 5.61 -3.76 -0.02 0.86 16 12 N -0.54 -11.04 4.70 -235.91 -1.11 -12.14 16 13 C 0.19 4.87 4.72 -4.97 -0.02 4.85 16 14 C -0.51 -13.85 8.47 -34.44 -0.29 -14.15 16 15 H 0.06 1.66 7.13 -52.48 -0.37 1.29 16 16 C 0.06 1.56 5.46 -17.82 -0.10 1.46 16 17 N -0.90 -26.13 13.29 55.43 0.74 -25.39 16 18 Si 0.90 21.19 29.54 -169.99 -5.02 16.17 16 19 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 20 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 21 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 22 C 0.07 1.18 5.43 -3.77 -0.02 1.16 16 23 C 0.06 0.89 5.38 -3.77 -0.02 0.87 16 24 N -0.54 -6.82 8.85 -13.83 -0.12 -6.94 16 25 C 0.32 3.45 12.27 -92.32 -1.13 2.32 16 26 N -0.51 -6.05 10.25 -11.23 -0.12 -6.16 16 27 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 28 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.07 0.53 8.14 -51.94 -0.42 0.11 16 32 H 0.16 1.91 6.95 -52.49 -0.36 1.55 16 33 H 0.06 0.98 8.06 -51.93 -0.42 0.56 16 34 H 0.08 1.16 7.84 -51.93 -0.41 0.76 16 35 H 0.08 1.37 8.07 -51.93 -0.42 0.95 16 36 H 0.03 0.59 8.14 -51.93 -0.42 0.16 16 37 H -0.01 -0.17 8.12 -51.93 -0.42 -0.59 16 38 H 0.03 0.87 8.03 -51.93 -0.42 0.45 16 39 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 40 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.10 1.88 6.79 -51.93 -0.35 1.53 16 42 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 43 H 0.08 1.05 6.88 -51.93 -0.36 0.69 16 44 H 0.20 1.39 8.06 -52.49 -0.42 0.97 16 LS Contribution 366.94 15.07 5.53 5.53 Total: -1.00 -31.12 366.94 -10.74 -41.86 By element: Atomic # 1 Polarization: 3.97 SS G_CDS: -6.47 Total: -2.50 kcal Atomic # 6 Polarization: 10.83 SS G_CDS: -2.63 Total: 8.20 kcal Atomic # 7 Polarization: -56.84 SS G_CDS: -1.43 Total: -58.27 kcal Atomic # 8 Polarization: -10.27 SS G_CDS: -0.72 Total: -10.98 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -31.12 -10.74 -41.86 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001165056064.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.265 kcal (2) G-P(sol) polarization free energy of solvation -31.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.860 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds