Wall clock time and date at job start Tue Mar 31 2020 13:53:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.45196 * 109.47252 * 2 1 4 4 C 1.34723 * 117.00510 * 179.97438 * 3 2 1 5 5 O 1.21474 * 119.99933 * 359.97438 * 4 3 2 6 6 C 1.47741 * 120.00271 * 180.27123 * 4 3 2 7 7 C 1.40118 * 120.09667 * 179.44743 * 6 4 3 8 8 C 1.38273 * 117.98681 * 179.73700 * 7 6 4 9 9 C 1.39611 * 118.03554 * 0.53051 * 8 7 6 10 10 N 1.38467 * 120.04358 * 179.70010 * 9 8 7 11 11 C 1.46958 * 111.00295 * 303.82540 * 10 9 8 12 12 C 1.53044 * 109.36561 * 176.80828 * 11 10 9 13 13 N 1.46958 * 109.36517 * 58.40238 * 12 11 10 14 14 C 1.46899 * 111.00502 * 176.80908 * 13 12 11 15 15 C 1.50707 * 109.46757 * 58.97844 * 14 13 12 16 16 H 1.07997 * 119.99861 * 5.00920 * 15 14 13 17 17 C 1.37876 * 119.99792 * 185.01098 * 15 14 13 18 18 N 1.31522 * 120.00248 * 0.02562 * 17 15 14 19 19 Si 1.86801 * 120.00129 * 179.97438 * 17 15 14 20 20 H 1.48504 * 109.46784 * 0.02562 * 19 17 15 21 21 H 1.48494 * 109.47211 * 120.00063 * 19 17 15 22 22 H 1.48494 * 109.47189 * 240.00124 * 19 17 15 23 23 C 1.46958 * 110.87853 * 300.68010 * 13 12 11 24 24 C 1.46948 * 111.00146 * 180.02562 * 10 9 8 25 25 N 1.32875 * 119.91078 * 359.73045 * 9 8 7 26 26 N 1.28360 * 122.16517 * 359.97438 * 25 9 8 27 27 H 1.09002 * 109.46844 * 180.02562 * 1 2 3 28 28 H 1.08992 * 109.47373 * 300.00031 * 1 2 3 29 29 H 1.08998 * 109.47039 * 60.00298 * 1 2 3 30 30 H 1.08999 * 109.47583 * 239.99635 * 2 1 3 31 31 H 1.09003 * 109.47295 * 120.00121 * 2 1 3 32 32 H 1.07998 * 121.00184 * 359.97438 * 7 6 4 33 33 H 1.08000 * 120.98016 * 180.27566 * 8 7 6 34 34 H 1.08998 * 109.48824 * 296.77965 * 11 10 9 35 35 H 1.09006 * 109.48699 * 56.84500 * 11 10 9 36 36 H 1.08997 * 109.49605 * 298.43490 * 12 11 10 37 37 H 1.09001 * 109.49228 * 178.36429 * 12 11 10 38 38 H 1.09000 * 109.47570 * 178.97559 * 14 13 12 39 39 H 1.08996 * 109.47187 * 298.98139 * 14 13 12 40 40 H 0.96995 * 119.99819 * 179.97438 * 18 17 15 41 41 H 1.08998 * 109.48824 * 299.34879 * 23 13 12 42 42 H 1.09006 * 109.48699 * 179.28344 * 23 13 12 43 43 H 1.09002 * 109.48877 * 303.15922 * 24 10 9 44 44 H 1.08999 * 109.49010 * 63.19895 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3496 1.5455 0.0005 5 8 4.0896 0.5822 0.0015 6 6 3.9142 2.9107 0.0066 7 6 5.3030 3.0967 0.0189 8 6 5.7841 4.3930 0.0186 9 6 4.8572 5.4370 0.0175 10 7 5.2932 6.7512 0.0234 11 6 6.1787 7.0072 1.1680 12 6 6.7008 8.4439 1.0943 13 7 5.5645 9.3759 1.0925 14 6 6.0270 10.7701 1.0988 15 6 6.8852 11.0201 -0.1146 16 1 7.0029 10.2485 -0.8610 17 6 7.5202 12.2338 -0.2717 18 7 7.3773 13.1733 0.6376 19 14 8.5845 12.5435 -1.7753 20 1 8.5821 11.3366 -2.6404 21 1 8.0429 13.6982 -2.5358 22 1 9.9741 12.8420 -1.3451 23 6 4.6790 9.1199 -0.0521 24 6 4.1569 7.6831 0.0217 25 7 3.5560 5.1677 0.0114 26 7 3.1070 3.9652 0.0058 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5139 0.8900 32 1 5.9771 2.2530 0.0245 33 1 6.8456 4.5920 0.0233 34 1 5.6231 6.8693 2.0956 35 1 7.0188 6.3131 1.1402 36 1 7.2794 8.5743 0.1797 37 1 7.3348 8.6453 1.9578 38 1 5.1663 11.4386 1.0789 39 1 6.6103 10.9554 2.0007 40 1 7.8243 14.0270 0.5272 41 1 5.2346 9.2578 -0.9796 42 1 3.8389 9.8139 -0.0243 43 1 3.5229 7.4818 -0.8418 44 1 3.5782 7.5525 0.9360 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001165056434.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:53:55 Heat of formation + Delta-G solvation = -2.828039 kcal Electronic energy + Delta-G solvation = -26334.129635 eV Core-core repulsion = 22480.809549 eV Total energy + Delta-G solvation = -3853.320086 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 2.20 seconds Orbital eigenvalues (eV) -41.62250 -40.47974 -38.89851 -36.99248 -35.75889 -33.51896 -32.79565 -32.18002 -31.26403 -30.68560 -28.06613 -25.93893 -25.38163 -24.34650 -23.23469 -22.91147 -21.91051 -21.58999 -19.52308 -18.84123 -17.70443 -17.44512 -16.98800 -16.96419 -16.40107 -15.55792 -15.09247 -14.72240 -14.64308 -14.39777 -14.36915 -14.15855 -13.97848 -13.70561 -13.27418 -13.27364 -13.11289 -12.32286 -12.31902 -12.05917 -11.99689 -11.82649 -11.24863 -11.11385 -11.01918 -10.90280 -10.88193 -10.79067 -10.71735 -10.55509 -10.47209 -10.29826 -9.94076 -9.87801 -9.65962 -8.52809 -8.50271 -7.33135 -6.10035 -4.19378 0.12002 0.54062 2.02478 2.14771 3.13601 3.22091 3.30941 3.34049 3.39934 3.77867 4.13560 4.34979 4.38198 4.45881 4.56834 4.59526 4.62571 4.84223 4.88910 4.98247 5.19499 5.20451 5.26109 5.35206 5.42423 5.45236 5.51814 5.59091 5.62774 5.65640 5.83483 5.92156 6.00810 6.08865 6.41775 6.56832 6.63575 6.71048 6.87786 7.15487 7.30917 7.44309 7.81351 7.89942 8.12013 8.19516 8.37423 8.90604 9.48132 10.95283 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.032597 B = 0.002258 C = 0.002210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 858.779518 B =12396.062116 C =12667.328222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.060 3.940 3 O -0.333 6.333 4 C 0.539 3.461 5 O -0.503 6.503 6 C -0.013 4.013 7 C -0.039 4.039 8 C -0.143 4.143 9 C 0.292 3.708 10 N -0.463 5.463 11 C 0.061 3.939 12 C 0.063 3.937 13 N -0.544 5.544 14 C 0.187 3.813 15 C -0.551 4.551 16 H 0.059 0.941 17 C 0.065 3.935 18 N -0.889 5.889 19 Si 0.889 3.111 20 H -0.274 1.274 21 H -0.283 1.283 22 H -0.283 1.283 23 C 0.058 3.942 24 C 0.063 3.937 25 N -0.280 5.280 26 N -0.151 5.151 27 H 0.080 0.920 28 H 0.069 0.931 29 H 0.069 0.931 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.163 0.837 33 H 0.163 0.837 34 H 0.056 0.944 35 H 0.082 0.918 36 H 0.056 0.944 37 H 0.080 0.920 38 H 0.030 0.970 39 H 0.036 0.964 40 H 0.262 0.738 41 H 0.050 0.950 42 H 0.079 0.921 43 H 0.086 0.914 44 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.417 -23.453 0.042 24.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.013 4.013 3 O -0.249 6.249 4 C 0.381 3.619 5 O -0.389 6.389 6 C -0.160 4.160 7 C -0.067 4.067 8 C -0.175 4.175 9 C 0.055 3.945 10 N -0.179 5.179 11 C -0.064 4.064 12 C -0.067 4.067 13 N -0.268 5.268 14 C 0.062 3.938 15 C -0.590 4.590 16 H 0.077 0.923 17 C -0.138 4.138 18 N -0.528 5.528 19 Si 0.717 3.283 20 H -0.198 1.198 21 H -0.209 1.209 22 H -0.209 1.209 23 C -0.071 4.071 24 C -0.063 4.063 25 N -0.132 5.132 26 N 0.000 5.000 27 H 0.099 0.901 28 H 0.088 0.912 29 H 0.088 0.912 30 H 0.090 0.910 31 H 0.090 0.910 32 H 0.181 0.819 33 H 0.180 0.820 34 H 0.075 0.925 35 H 0.101 0.899 36 H 0.074 0.926 37 H 0.099 0.901 38 H 0.048 0.952 39 H 0.055 0.945 40 H 0.072 0.928 41 H 0.068 0.932 42 H 0.097 0.903 43 H 0.104 0.896 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -8.661 -22.908 0.117 24.491 hybrid contribution 2.296 -0.299 -1.157 2.588 sum -6.365 -23.207 -1.040 24.086 Atomic orbital electron populations 1.21808 0.92244 1.02980 1.03975 1.23134 0.95751 0.79723 1.02728 1.86687 1.22666 1.32331 1.83169 1.20265 0.81175 0.87875 0.72593 1.90860 1.60691 1.41271 1.46119 1.21400 0.92197 0.92894 1.09519 1.22165 0.94301 0.98532 0.91696 1.21980 1.02182 0.91055 1.02260 1.21898 0.91055 0.92383 0.89150 1.58875 1.19737 0.99075 1.40210 1.22585 0.95088 0.99855 0.88864 1.21977 0.93875 0.88322 1.02480 1.62745 1.17061 1.06977 1.40035 1.19759 0.95300 0.81984 0.96806 1.21766 1.30064 0.99713 1.07477 0.92281 1.24967 0.96415 0.96120 0.96273 1.69951 1.43377 1.05280 1.34176 0.86582 0.80310 0.78277 0.83116 1.19827 1.20931 1.20949 1.22055 0.97533 0.92843 0.94620 1.22358 0.89878 0.91280 1.02763 1.73597 1.12198 1.11514 1.15934 1.73238 1.30820 0.93854 1.02079 0.90123 0.91214 0.91220 0.91003 0.90992 0.81936 0.81989 0.92519 0.89945 0.92622 0.90146 0.95181 0.94541 0.92794 0.93170 0.90292 0.89562 0.92013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.87 10.29 37.16 0.38 -0.49 16 2 C 0.06 0.48 6.19 37.16 0.23 0.71 16 3 O -0.33 -3.78 10.05 -40.55 -0.41 -4.19 16 4 C 0.54 6.53 7.94 34.61 0.27 6.81 16 5 O -0.50 -6.47 16.17 -19.25 -0.31 -6.78 16 6 C -0.01 -0.16 6.83 -82.86 -0.57 -0.73 16 7 C -0.04 -0.40 9.71 -38.86 -0.38 -0.77 16 8 C -0.14 -1.51 9.29 -39.06 -0.36 -1.87 16 9 C 0.29 3.95 6.47 -154.95 -1.00 2.94 16 10 N -0.46 -6.74 4.73 -172.93 -0.82 -7.55 16 11 C 0.06 0.84 5.37 -3.77 -0.02 0.82 16 12 C 0.06 1.09 5.24 -3.77 -0.02 1.07 16 13 N -0.54 -10.82 4.92 -235.91 -1.16 -11.98 16 14 C 0.19 4.55 5.14 -4.97 -0.03 4.52 16 15 C -0.55 -14.41 7.66 -34.44 -0.26 -14.67 16 16 H 0.06 1.54 5.82 -52.49 -0.31 1.24 16 17 C 0.07 1.77 5.46 -17.82 -0.10 1.67 16 18 N -0.89 -25.36 13.29 55.43 0.74 -24.63 16 19 Si 0.89 20.84 29.54 -169.99 -5.02 15.82 16 20 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 21 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 22 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 23 C 0.06 1.07 5.32 -3.77 -0.02 1.05 16 24 C 0.06 0.99 4.79 -3.77 -0.02 0.97 16 25 N -0.28 -4.18 9.89 31.21 0.31 -3.87 16 26 N -0.15 -2.18 11.30 33.31 0.38 -1.81 16 27 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 28 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.16 1.26 7.71 -52.49 -0.40 0.86 16 33 H 0.16 1.29 7.23 -52.49 -0.38 0.91 16 34 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.08 0.89 6.82 -51.93 -0.35 0.53 16 36 H 0.06 1.08 6.61 -51.93 -0.34 0.74 16 37 H 0.08 1.38 8.14 -51.93 -0.42 0.95 16 38 H 0.03 0.79 8.12 -51.93 -0.42 0.36 16 39 H 0.04 0.96 8.14 -51.93 -0.42 0.53 16 40 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 41 H 0.05 1.01 6.78 -51.93 -0.35 0.66 16 42 H 0.08 1.43 8.12 -51.93 -0.42 1.00 16 43 H 0.09 1.30 7.83 -51.93 -0.41 0.89 16 44 H 0.06 0.98 8.05 -51.93 -0.42 0.56 16 LS Contribution 363.42 15.07 5.48 5.48 Total: -1.00 -30.47 363.42 -9.03 -39.49 By element: Atomic # 1 Polarization: 4.34 SS G_CDS: -6.32 Total: -1.99 kcal Atomic # 6 Polarization: 3.90 SS G_CDS: -1.89 Total: 2.01 kcal Atomic # 7 Polarization: -49.29 SS G_CDS: -0.56 Total: -49.85 kcal Atomic # 8 Polarization: -10.25 SS G_CDS: -0.72 Total: -10.97 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.82 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -30.47 -9.03 -39.49 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001165056434.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.667 kcal (2) G-P(sol) polarization free energy of solvation -30.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.495 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.20 seconds