Wall clock time and date at job start Tue Mar 31 2020 13:54:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.45199 * 109.46995 * 2 1 4 4 C 1.34822 * 117.00014 * 180.02562 * 3 2 1 5 5 O 1.21546 * 119.99795 * 0.02562 * 4 3 2 6 6 C 1.47008 * 119.99948 * 180.02562 * 4 3 2 7 7 C 1.38478 * 126.89374 * 180.29248 * 6 4 3 8 8 C 1.39639 * 105.35686 * 180.12718 * 7 6 4 9 9 C 1.50699 * 126.06357 * 179.88519 * 8 7 6 10 10 N 1.46900 * 109.47393 * 94.71357 * 9 8 7 11 11 C 1.46896 * 110.99892 * 190.00129 * 10 9 8 12 12 C 1.50704 * 109.47266 * 71.90816 * 11 10 9 13 13 H 1.08006 * 120.00025 * 355.41329 * 12 11 10 14 14 C 1.37875 * 120.00097 * 175.42039 * 12 11 10 15 15 N 1.31509 * 120.00218 * 359.97438 * 14 12 11 16 16 Si 1.86803 * 119.99855 * 179.97438 * 14 12 11 17 17 H 1.48494 * 109.47318 * 89.99766 * 16 14 12 18 18 H 1.48503 * 109.46966 * 209.99845 * 16 14 12 19 19 H 1.48498 * 109.47142 * 329.99643 * 16 14 12 20 20 C 1.46893 * 110.99930 * 66.04858 * 10 9 8 21 21 C 1.53009 * 109.47160 * 199.91238 * 20 10 9 22 22 C 1.47193 * 109.47000 * 181.78645 * 21 20 10 23 23 N 9.81025 * 105.19246 * 331.71611 * 2 1 3 24 24 N 1.30879 * 107.88087 * 359.62012 * 8 7 6 25 25 N 1.28443 * 110.93837 * 0.24218 * 24 8 7 26 26 C 1.46500 * 125.19147 * 179.97438 * 25 24 8 27 27 H 1.09002 * 109.46971 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47072 * 299.99541 * 1 2 3 29 29 H 1.08991 * 109.47452 * 60.00072 * 1 2 3 30 30 H 1.09000 * 109.47072 * 240.00459 * 2 1 3 31 31 H 1.08999 * 109.47741 * 120.00111 * 2 1 3 32 32 H 1.08001 * 127.32586 * 0.02562 * 7 6 4 33 33 H 1.09003 * 109.46995 * 334.71240 * 9 8 7 34 34 H 1.09006 * 109.47107 * 214.71604 * 9 8 7 35 35 H 1.09006 * 109.46814 * 191.90050 * 11 10 9 36 36 H 1.08996 * 109.47584 * 311.90604 * 11 10 9 37 37 H 0.97001 * 120.00649 * 180.02562 * 15 14 12 38 38 H 1.09005 * 109.47154 * 319.90896 * 20 10 9 39 39 H 1.09004 * 109.47608 * 79.91183 * 20 10 9 40 40 H 1.08998 * 109.46510 * 301.78763 * 21 20 10 41 41 H 1.09006 * 109.46755 * 61.78767 * 21 20 10 42 42 H 1.09003 * 109.46891 * 90.03042 * 26 25 24 43 43 H 1.09001 * 109.47380 * 210.02119 * 26 25 24 44 44 H 1.08997 * 109.47524 * 330.02924 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3505 1.5456 -0.0005 5 8 4.0909 0.5817 -0.0015 6 6 3.9124 2.9041 0.0000 7 6 5.2535 3.2491 -0.0061 8 6 5.2762 4.6453 0.0003 9 6 6.5087 5.5125 -0.0003 10 7 6.8386 5.8938 -1.3800 11 6 8.1576 6.5368 -1.4474 12 6 9.2322 5.5029 -1.2294 13 1 8.9618 4.4863 -0.9845 14 6 10.5605 5.8548 -1.3423 15 7 10.8898 7.0925 -1.6408 16 14 11.8925 4.5734 -1.0712 17 1 12.2144 3.9134 -2.3619 18 1 13.1106 5.2315 -0.5344 19 1 11.4112 3.5566 -0.1019 20 6 5.7997 6.7628 -1.9487 21 6 5.8939 6.7383 -3.4757 22 6 4.8808 7.6421 -4.0443 23 7 4.1009 8.3371 -4.4860 24 7 4.0374 5.0674 0.0012 25 7 3.2160 4.0799 0.0010 26 6 1.7557 4.1964 0.0023 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8899 32 1 6.1016 2.5805 -0.0126 33 1 7.3422 4.9596 0.4331 34 1 6.3220 6.4097 0.5899 35 1 8.2885 6.9956 -2.4275 36 1 8.2284 7.3028 -0.6753 37 1 11.8243 7.3400 -1.7206 38 1 4.8175 6.4051 -1.6395 39 1 5.9438 7.7827 -1.5921 40 1 6.8869 7.0658 -3.7836 41 1 5.7182 5.7240 -3.8343 42 1 1.3926 4.2256 -1.0251 43 1 1.3231 3.3379 0.5161 44 1 1.4646 5.1122 0.5167 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001250548071.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:54:14 Heat of formation + Delta-G solvation = 26.149791 kcal Electronic energy + Delta-G solvation = -26546.590017 eV Core-core repulsion = 22694.526504 eV Total energy + Delta-G solvation = -3852.063513 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 1.53 seconds Orbital eigenvalues (eV) -42.53758 -40.35058 -37.47912 -36.87670 -36.11078 -33.65460 -32.64768 -32.20159 -31.00164 -30.83878 -28.44119 -26.61802 -25.05784 -24.54748 -23.07262 -22.73878 -21.20443 -20.44736 -19.82538 -17.82016 -17.17770 -17.06590 -16.99108 -16.51139 -16.01307 -15.63141 -15.08358 -14.57417 -14.33682 -14.28337 -14.14981 -13.86291 -13.76711 -13.52380 -13.13021 -12.79414 -12.75442 -12.69363 -12.39559 -12.32322 -12.05309 -12.03881 -11.92895 -11.41784 -11.30013 -11.18019 -10.90557 -10.89714 -10.83041 -10.62839 -10.47944 -10.32498 -9.80941 -9.31596 -9.10798 -8.79617 -8.43944 -7.39161 -6.04193 -4.05629 0.98689 2.19318 2.47087 2.55532 2.91216 3.04035 3.07446 3.33813 3.40649 3.43726 4.23845 4.26540 4.45215 4.47992 4.53579 4.58920 4.87227 4.96318 4.99486 5.13699 5.21860 5.25850 5.33361 5.33930 5.35627 5.47609 5.50958 5.58992 5.63275 5.87863 5.96052 6.04506 6.16566 6.27380 6.33995 6.40294 6.57042 6.79728 7.13424 7.26360 7.44467 7.76327 7.82477 7.99326 8.08656 8.13055 8.45871 9.01933 9.59264 11.06277 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.010901 B = 0.003503 C = 0.002833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2568.048768 B = 7991.746871 C = 9882.672555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.062 3.938 3 O -0.362 6.362 4 C 0.546 3.454 5 O -0.491 6.491 6 C -0.048 4.048 7 C -0.115 4.115 8 C 0.045 3.955 9 C 0.145 3.855 10 N -0.529 5.529 11 C 0.190 3.810 12 C -0.508 4.508 13 H 0.066 0.934 14 C 0.057 3.943 15 N -0.898 5.898 16 Si 0.896 3.104 17 H -0.281 1.281 18 H -0.289 1.289 19 H -0.273 1.273 20 C 0.056 3.944 21 C -0.026 4.026 22 C 0.222 3.778 23 N -0.462 5.462 24 N -0.262 5.262 25 N -0.270 5.270 26 C 0.088 3.912 27 H 0.081 0.919 28 H 0.066 0.934 29 H 0.067 0.933 30 H 0.073 0.927 31 H 0.072 0.928 32 H 0.169 0.831 33 H 0.108 0.892 34 H 0.042 0.958 35 H 0.040 0.960 36 H -0.006 1.006 37 H 0.261 0.739 38 H 0.077 0.923 39 H 0.035 0.965 40 H 0.116 0.884 41 H 0.111 0.889 42 H 0.083 0.917 43 H 0.102 0.898 44 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.585 -10.733 4.627 22.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.011 4.011 3 O -0.279 6.279 4 C 0.389 3.611 5 O -0.377 6.377 6 C -0.172 4.172 7 C -0.144 4.144 8 C -0.111 4.111 9 C 0.016 3.984 10 N -0.254 5.254 11 C 0.066 3.934 12 C -0.546 4.546 13 H 0.084 0.916 14 C -0.144 4.144 15 N -0.537 5.537 16 Si 0.724 3.276 17 H -0.207 1.207 18 H -0.215 1.215 19 H -0.197 1.197 20 C -0.075 4.075 21 C -0.067 4.067 22 C -0.095 4.095 23 N -0.140 5.140 24 N -0.097 5.097 25 N -0.060 5.060 26 C -0.052 4.052 27 H 0.099 0.901 28 H 0.085 0.915 29 H 0.086 0.914 30 H 0.091 0.909 31 H 0.091 0.909 32 H 0.186 0.814 33 H 0.126 0.874 34 H 0.060 0.940 35 H 0.058 0.942 36 H 0.012 0.988 37 H 0.071 0.929 38 H 0.095 0.905 39 H 0.053 0.947 40 H 0.134 0.866 41 H 0.129 0.871 42 H 0.102 0.898 43 H 0.121 0.879 44 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -21.190 -9.403 3.663 23.470 hybrid contribution 1.503 -1.054 0.641 1.944 sum -19.687 -10.457 4.304 22.704 Atomic orbital electron populations 1.21821 0.92435 1.03197 1.03525 1.23080 0.95322 0.79687 1.03029 1.86560 1.23750 1.32884 1.84751 1.19669 0.80517 0.87785 0.73174 1.90908 1.60286 1.40836 1.45628 1.20482 0.92529 0.84967 1.19185 1.22160 0.93973 0.95817 1.02480 1.22253 0.92258 0.92922 1.03623 1.20351 0.90916 0.96077 0.91053 1.62015 1.03448 1.42645 1.17255 1.19857 0.82659 0.93696 0.97213 1.21149 0.89898 0.96358 1.47205 0.91570 1.24960 0.98760 0.95316 0.95393 1.69941 1.17787 1.17193 1.48828 0.86533 0.81161 0.81462 0.78471 1.20694 1.21500 1.19734 1.21970 0.97393 0.96328 0.91770 1.19366 0.94500 0.96529 0.96302 1.29405 0.93767 0.93517 0.92842 1.81061 1.11678 1.11087 1.10142 1.73166 1.01308 1.16094 1.19156 1.45680 1.07474 1.02070 1.50825 1.22262 0.73096 1.05327 1.04557 0.90057 0.91457 0.91374 0.90870 0.90938 0.81350 0.87400 0.94035 0.94244 0.98822 0.92899 0.90457 0.94662 0.86608 0.87115 0.89833 0.87937 0.88684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.69 10.29 37.16 0.38 -0.31 16 2 C 0.06 0.46 6.20 37.16 0.23 0.69 16 3 O -0.36 -3.54 7.69 -40.83 -0.31 -3.86 16 4 C 0.55 7.04 7.93 34.28 0.27 7.31 16 5 O -0.49 -7.50 16.71 -19.30 -0.32 -7.82 16 6 C -0.05 -0.66 6.96 -82.08 -0.57 -1.23 16 7 C -0.12 -1.74 10.78 -38.97 -0.42 -2.16 16 8 C 0.05 0.72 6.03 -82.48 -0.50 0.22 16 9 C 0.15 2.52 5.37 -4.98 -0.03 2.49 16 10 N -0.53 -9.91 4.37 -237.51 -1.04 -10.94 16 11 C 0.19 4.36 4.55 -4.98 -0.02 4.34 16 12 C -0.51 -12.89 8.53 -34.44 -0.29 -13.18 16 13 H 0.07 1.65 7.42 -52.48 -0.39 1.26 16 14 C 0.06 1.52 5.46 -17.82 -0.10 1.42 16 15 N -0.90 -25.13 13.29 55.43 0.74 -24.40 16 16 Si 0.90 20.57 29.54 -169.99 -5.02 15.55 16 17 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 18 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 19 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 20 C 0.06 0.91 4.80 -3.82 -0.02 0.89 16 21 C -0.03 -0.39 5.84 -29.52 -0.17 -0.56 16 22 C 0.22 3.45 15.43 -20.82 -0.32 3.13 16 23 N -0.46 -8.08 18.53 42.08 0.78 -7.30 16 24 N -0.26 -3.90 10.45 33.63 0.35 -3.55 16 25 N -0.27 -3.45 3.75 -63.90 -0.24 -3.69 16 26 C 0.09 0.72 10.81 59.85 0.65 1.37 16 27 H 0.08 0.25 8.14 -51.93 -0.42 -0.17 16 28 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 29 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.17 2.46 8.06 -52.49 -0.42 2.04 16 33 H 0.11 1.95 7.01 -51.93 -0.36 1.59 16 34 H 0.04 0.71 8.12 -51.93 -0.42 0.29 16 35 H 0.04 0.95 6.53 -51.93 -0.34 0.61 16 36 H -0.01 -0.15 8.05 -51.93 -0.42 -0.57 16 37 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 38 H 0.08 1.24 5.78 -51.93 -0.30 0.94 16 39 H 0.04 0.59 8.00 -51.93 -0.42 0.18 16 40 H 0.12 1.76 6.72 -51.93 -0.35 1.41 16 41 H 0.11 1.49 8.14 -51.93 -0.42 1.06 16 42 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 43 H 0.10 0.70 6.15 -51.93 -0.32 0.38 16 44 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 LS Contribution 379.89 15.07 5.72 5.72 Total: -1.00 -31.34 379.89 -6.51 -37.85 By element: Atomic # 1 Polarization: 4.28 SS G_CDS: -6.26 Total: -1.98 kcal Atomic # 6 Polarization: 5.32 SS G_CDS: -0.91 Total: 4.41 kcal Atomic # 7 Polarization: -50.47 SS G_CDS: 0.59 Total: -49.88 kcal Atomic # 8 Polarization: -11.05 SS G_CDS: -0.64 Total: -11.68 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.02 Total: 15.55 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -31.34 -6.51 -37.85 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250548071.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.997 kcal (2) G-P(sol) polarization free energy of solvation -31.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.847 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.53 seconds