Wall clock time and date at job start Tue Mar 31 2020 12:42:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.47137 * 2 1 4 4 C 1.53002 * 109.46937 * 240.00549 * 2 1 3 5 5 N 1.46501 * 109.47233 * 175.00026 * 4 2 1 6 6 C 1.36882 * 126.39479 * 269.71281 * 5 4 2 7 7 C 1.34671 * 106.81480 * 179.84220 * 6 5 4 8 8 N 1.34126 * 108.02099 * 0.42020 * 7 6 5 9 9 C 1.30498 * 109.25450 * 359.73338 * 8 7 6 10 10 N 1.46500 * 109.47332 * 120.00621 * 2 1 3 11 11 C 1.34771 * 119.99722 * 274.99478 * 10 2 1 12 12 O 1.21352 * 120.00160 * 0.02562 * 11 10 2 13 13 C 1.49452 * 120.00084 * 180.02562 * 11 10 2 14 14 O 1.21353 * 119.99947 * 5.09602 * 13 11 10 15 15 N 1.34774 * 120.00279 * 185.09780 * 13 11 10 16 16 C 1.46494 * 120.00151 * 184.56050 * 15 13 11 17 17 C 1.53003 * 109.47491 * 184.70074 * 16 15 13 18 18 C 1.50708 * 115.54705 * 294.79992 * 17 16 15 19 19 H 1.07999 * 119.99435 * 121.52691 * 18 17 16 20 20 C 1.37869 * 119.99831 * 301.24568 * 18 17 16 21 21 N 1.31521 * 120.00014 * 173.16061 * 20 18 17 22 22 Si 1.86803 * 120.00258 * 353.16421 * 20 18 17 23 23 H 1.48495 * 109.47128 * 94.23742 * 22 20 18 24 24 H 1.48501 * 109.46955 * 214.24149 * 22 20 18 25 25 H 1.48500 * 109.46890 * 334.23636 * 22 20 18 26 26 C 1.52999 * 117.49750 * 80.46199 * 17 16 15 27 27 C 1.52994 * 117.50267 * 149.12521 * 17 16 15 28 28 H 1.09000 * 109.46812 * 299.99337 * 1 2 3 29 29 H 1.08999 * 109.47420 * 59.99720 * 1 2 3 30 30 H 1.09000 * 109.47137 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47133 * 295.00277 * 4 2 1 32 32 H 1.09003 * 109.47310 * 54.99635 * 4 2 1 33 33 H 1.07998 * 126.59442 * 359.97438 * 6 5 4 34 34 H 1.08001 * 125.98572 * 180.11681 * 7 6 5 35 35 H 1.08000 * 125.64914 * 180.02562 * 9 8 7 36 36 H 0.96995 * 120.00213 * 95.00137 * 10 2 1 37 37 H 0.97001 * 120.00152 * 4.56189 * 15 13 11 38 38 H 1.09008 * 109.47462 * 64.70268 * 16 15 13 39 39 H 1.08995 * 109.47447 * 304.69904 * 16 15 13 40 40 H 0.97002 * 120.00052 * 180.02562 * 21 20 18 41 41 H 1.08999 * 117.50326 * 215.00155 * 26 17 16 42 42 H 1.08998 * 117.49933 * 0.03434 * 26 17 16 43 43 H 1.09006 * 117.49824 * 359.97438 * 27 17 16 44 44 H 1.08998 * 117.50086 * 144.97404 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7211 -1.2493 5 7 3.5000 -0.6178 -1.3111 6 6 4.2189 0.3712 -1.9265 7 6 5.5205 0.0810 -1.7389 8 7 5.5943 -1.0592 -1.0364 9 6 4.3879 -1.4835 -0.7766 10 7 2.0183 -0.6907 1.1961 11 6 2.1472 -0.0185 2.3570 12 8 1.8582 1.1589 2.4117 13 6 2.6459 -0.7229 3.5771 14 8 3.0222 -1.8741 3.5018 15 7 2.6777 -0.0796 4.7610 16 6 3.2588 -0.7349 5.9353 17 6 3.0652 0.1556 7.1644 18 6 3.7988 1.4717 7.1354 19 1 3.2494 2.3980 7.2170 20 6 5.1717 1.4931 7.0106 21 7 5.7997 2.6374 6.8500 22 14 6.1399 -0.1034 7.0694 23 1 6.3605 -0.5997 5.6874 24 1 7.4508 0.1367 7.7244 25 1 5.3779 -1.1161 7.8434 26 6 1.6987 0.1234 7.8518 27 6 2.9079 -0.5358 8.5201 28 1 -0.3633 0.5137 0.8901 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 1.7515 -1.7714 -1.2058 32 1 1.6052 -0.2616 -2.1370 33 1 3.8191 1.2220 -2.4582 34 1 6.3581 0.6617 -2.0962 35 1 4.1406 -2.3785 -0.2251 36 1 2.2491 -1.6318 1.1524 37 1 2.3159 0.8173 4.8356 38 1 4.3236 -0.8995 5.7700 39 1 2.7643 -1.6924 6.0990 40 1 6.7656 2.6524 6.7619 41 1 1.3303 1.0541 8.2833 42 1 0.9378 -0.5325 7.4289 43 1 2.9418 -1.6253 8.5364 44 1 3.3353 -0.0391 9.3910 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001323298428.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:42:38 Heat of formation + Delta-G solvation = 23.030075 kcal Electronic energy + Delta-G solvation = -27115.135398 eV Core-core repulsion = 23262.936604 eV Total energy + Delta-G solvation = -3852.198794 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.20329 -40.45868 -38.60733 -37.06091 -36.69914 -33.87674 -33.22981 -32.21401 -31.17165 -29.56835 -27.50916 -26.87164 -25.60906 -24.03992 -21.88102 -21.62519 -21.45566 -21.00135 -20.12290 -19.48637 -18.30865 -17.62605 -16.99250 -16.44253 -15.98908 -15.64979 -15.39205 -15.03528 -14.83167 -14.40825 -14.24116 -14.02327 -13.81037 -13.69971 -13.33622 -13.30190 -12.98690 -12.91343 -12.73931 -12.46338 -12.35017 -12.19194 -11.67857 -11.42244 -11.07471 -10.72619 -10.61692 -10.31314 -10.06875 -9.88617 -9.67253 -9.43675 -9.34341 -9.24628 -8.91579 -8.63522 -8.52595 -8.48087 -6.18966 -4.21258 1.64216 1.89523 2.41359 2.55487 3.12057 3.26391 3.37467 3.40289 3.45552 3.78832 4.08317 4.23879 4.35901 4.55433 4.62529 4.64625 4.70094 4.85213 4.95390 4.98232 5.18457 5.22194 5.31791 5.46654 5.57489 5.57912 5.77723 5.86879 6.00440 6.06229 6.08436 6.11895 6.33619 6.42496 6.61244 6.63176 6.74964 6.85857 6.99656 7.02012 7.07815 7.62928 7.67297 7.98520 7.98737 8.35068 8.40748 8.83561 9.43665 10.92067 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.014262 B = 0.003717 C = 0.003291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1962.826879 B = 7530.329991 C = 8506.470363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.125 3.875 3 H 0.100 0.900 4 C 0.098 3.902 5 N -0.461 5.461 6 C -0.058 4.058 7 C -0.028 4.028 8 N -0.493 5.493 9 C 0.188 3.812 10 N -0.705 5.705 11 C 0.514 3.486 12 O -0.509 6.509 13 C 0.497 3.503 14 O -0.540 6.540 15 N -0.663 5.663 16 C 0.149 3.851 17 C -0.018 4.018 18 C -0.493 4.493 19 H 0.080 0.920 20 C 0.084 3.916 21 N -0.887 5.887 22 Si 0.866 3.134 23 H -0.277 1.277 24 H -0.290 1.290 25 H -0.251 1.251 26 C -0.180 4.180 27 C -0.186 4.186 28 H 0.072 0.928 29 H 0.071 0.929 30 H 0.063 0.937 31 H 0.102 0.898 32 H 0.110 0.890 33 H 0.173 0.827 34 H 0.168 0.832 35 H 0.202 0.798 36 H 0.409 0.591 37 H 0.420 0.580 38 H 0.062 0.938 39 H 0.058 0.942 40 H 0.267 0.733 41 H 0.087 0.913 42 H 0.073 0.927 43 H 0.071 0.929 44 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.081 -7.662 -17.462 22.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.020 3.980 3 H 0.118 0.882 4 C -0.026 4.026 5 N -0.144 5.144 6 C -0.190 4.190 7 C -0.175 4.175 8 N -0.210 5.210 9 C -0.095 4.095 10 N -0.360 5.360 11 C 0.295 3.705 12 O -0.382 6.382 13 C 0.277 3.723 14 O -0.419 6.419 15 N -0.313 5.313 16 C 0.026 3.974 17 C -0.019 4.019 18 C -0.530 4.530 19 H 0.098 0.902 20 C -0.120 4.120 21 N -0.523 5.523 22 Si 0.694 3.306 23 H -0.204 1.204 24 H -0.217 1.217 25 H -0.175 1.175 26 C -0.217 4.217 27 C -0.224 4.224 28 H 0.092 0.908 29 H 0.090 0.910 30 H 0.082 0.918 31 H 0.120 0.880 32 H 0.128 0.872 33 H 0.191 0.809 34 H 0.186 0.814 35 H 0.218 0.782 36 H 0.245 0.755 37 H 0.257 0.743 38 H 0.080 0.920 39 H 0.077 0.923 40 H 0.077 0.923 41 H 0.105 0.895 42 H 0.092 0.908 43 H 0.089 0.911 44 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -10.227 -7.876 -17.221 21.521 hybrid contribution -0.072 -0.317 -0.170 0.367 sum -10.299 -8.193 -17.391 21.809 Atomic orbital electron populations 1.22142 0.93329 1.02955 1.03701 1.21434 0.95121 0.98370 0.83110 0.88207 1.22266 0.77554 1.03505 0.99268 1.45524 1.06997 1.20439 1.41455 1.22716 0.92941 0.96929 1.06439 1.22329 0.95552 0.96456 1.03188 1.70314 1.22192 1.12233 1.16271 1.25003 0.84088 0.98099 1.02295 1.45729 1.66877 1.14645 1.08782 1.20387 0.78297 0.87044 0.84763 1.90784 1.47399 1.15201 1.84858 1.19917 0.80938 0.86740 0.84735 1.90710 1.48831 1.16715 1.85619 1.45734 1.57454 1.20436 1.07688 1.21312 0.97465 0.94412 0.84205 1.19571 0.97105 0.96820 0.88425 1.20251 0.91357 0.89737 1.51615 0.90213 1.24925 0.97659 0.95974 0.93469 1.69890 1.09304 1.25453 1.47651 0.87065 0.79768 0.85025 0.78771 1.20352 1.21679 1.17489 1.22797 0.91025 1.01832 1.06039 1.23073 1.03008 0.97468 0.98857 0.90850 0.90973 0.91759 0.88010 0.87159 0.80929 0.81449 0.78180 0.75485 0.74290 0.91973 0.92336 0.92344 0.89466 0.90845 0.91067 0.89116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.05 9.48 37.16 0.35 -0.70 16 2 C 0.13 1.03 2.81 -67.93 -0.19 0.84 16 3 H 0.10 1.06 7.58 -51.93 -0.39 0.67 16 4 C 0.10 0.54 5.65 -4.04 -0.02 0.52 16 5 N -0.46 -4.26 2.70 -118.57 -0.32 -4.58 16 6 C -0.06 -0.58 11.58 -16.56 -0.19 -0.77 16 7 C -0.03 -0.34 11.87 -17.81 -0.21 -0.55 16 8 N -0.49 -7.26 11.25 -14.67 -0.17 -7.43 16 9 C 0.19 2.19 12.22 -90.38 -1.10 1.09 16 10 N -0.71 -7.91 4.73 -54.24 -0.26 -8.17 16 11 C 0.51 8.15 7.85 -11.59 -0.09 8.06 16 12 O -0.51 -9.22 16.16 5.49 0.09 -9.14 16 13 C 0.50 9.19 7.88 -11.59 -0.09 9.10 16 14 O -0.54 -10.54 16.47 5.49 0.09 -10.45 16 15 N -0.66 -13.23 5.46 -60.73 -0.33 -13.57 16 16 C 0.15 3.17 5.08 -4.04 -0.02 3.15 16 17 C -0.02 -0.40 0.85 -155.66 -0.13 -0.53 16 18 C -0.49 -13.10 9.19 -34.44 -0.32 -13.42 16 19 H 0.08 2.31 8.06 -52.49 -0.42 1.89 16 20 C 0.08 2.35 5.46 -17.82 -0.10 2.25 16 21 N -0.89 -26.56 13.96 55.43 0.77 -25.79 16 22 Si 0.87 21.47 24.69 -169.99 -4.20 17.27 16 23 H -0.28 -7.04 6.96 56.52 0.39 -6.65 16 24 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 25 H -0.25 -5.79 6.11 56.52 0.35 -5.45 16 26 C -0.18 -3.41 9.96 -26.69 -0.27 -3.68 16 27 C -0.19 -3.71 8.69 -26.70 -0.23 -3.95 16 28 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.10 0.36 8.14 -51.93 -0.42 -0.07 16 32 H 0.11 0.34 8.14 -51.93 -0.42 -0.08 16 33 H 0.17 1.16 8.06 -52.49 -0.42 0.73 16 34 H 0.17 1.74 8.06 -52.49 -0.42 1.31 16 35 H 0.20 1.84 8.06 -52.49 -0.42 1.42 16 36 H 0.41 4.04 8.01 -40.82 -0.33 3.72 16 37 H 0.42 8.46 7.83 -40.82 -0.32 8.14 16 38 H 0.06 1.46 4.27 -51.92 -0.22 1.24 16 39 H 0.06 1.15 8.06 -51.93 -0.42 0.73 16 40 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 41 H 0.09 1.65 8.14 -51.93 -0.42 1.23 16 42 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 43 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 44 H 0.09 1.85 8.14 -51.93 -0.42 1.43 16 LS Contribution 373.74 15.07 5.63 5.63 Total: -1.00 -34.71 373.74 -7.68 -42.39 By element: Atomic # 1 Polarization: 18.78 SS G_CDS: -6.38 Total: 12.40 kcal Atomic # 6 Polarization: 4.03 SS G_CDS: -2.61 Total: 1.41 kcal Atomic # 7 Polarization: -59.23 SS G_CDS: -0.30 Total: -59.53 kcal Atomic # 8 Polarization: -19.76 SS G_CDS: 0.18 Total: -19.58 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -4.20 Total: 17.27 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -34.71 -7.68 -42.39 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001323298428.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.422 kcal (2) G-P(sol) polarization free energy of solvation -34.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.707 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.392 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds