Wall clock time and date at job start Tue Mar 31 2020 12:42:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08993 * 109.47404 * 2 1 4 4 C 1.53004 * 109.47250 * 120.00782 * 2 1 3 5 5 N 1.46497 * 109.47022 * 185.00119 * 4 2 1 6 6 C 1.36886 * 126.39364 * 269.70886 * 5 4 2 7 7 C 1.34662 * 106.81589 * 179.84152 * 6 5 4 8 8 N 1.34128 * 108.02252 * 0.42217 * 7 6 5 9 9 C 1.30495 * 109.25256 * 359.73447 * 8 7 6 10 10 N 1.46505 * 109.46859 * 240.00416 * 2 1 3 11 11 C 1.34768 * 120.00082 * 84.99762 * 10 2 1 12 12 O 1.21345 * 120.00101 * 0.02562 * 11 10 2 13 13 C 1.49453 * 120.00060 * 179.97438 * 11 10 2 14 14 O 1.21347 * 119.99738 * 5.09600 * 13 11 10 15 15 N 1.34782 * 120.00141 * 185.08842 * 13 11 10 16 16 C 1.46497 * 119.99894 * 185.03768 * 15 13 11 17 17 C 1.53005 * 109.46780 * 184.77988 * 16 15 13 18 18 C 1.50694 * 115.55017 * 294.81935 * 17 16 15 19 19 H 1.08003 * 119.99667 * 95.20821 * 18 17 16 20 20 C 1.37878 * 120.00569 * 274.92361 * 18 17 16 21 21 N 1.31513 * 119.99163 * 355.42361 * 20 18 17 22 22 Si 1.86794 * 120.00501 * 175.42139 * 20 18 17 23 23 H 1.48506 * 109.47138 * 59.99993 * 22 20 18 24 24 H 1.48497 * 109.47408 * 180.02562 * 22 20 18 25 25 H 1.48504 * 109.47174 * 300.00591 * 22 20 18 26 26 C 1.53002 * 117.49623 * 80.49302 * 17 16 15 27 27 C 1.53002 * 117.49534 * 149.14978 * 17 16 15 28 28 H 1.09000 * 109.47045 * 59.99552 * 1 2 3 29 29 H 1.08998 * 109.47016 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.46526 * 299.99768 * 1 2 3 31 31 H 1.08999 * 109.46598 * 304.99301 * 4 2 1 32 32 H 1.08996 * 109.47456 * 64.99287 * 4 2 1 33 33 H 1.08007 * 126.59116 * 359.97438 * 6 5 4 34 34 H 1.08008 * 125.98940 * 180.11565 * 7 6 5 35 35 H 1.08002 * 125.64586 * 180.02562 * 9 8 7 36 36 H 0.97003 * 120.00007 * 265.00293 * 10 2 1 37 37 H 0.97004 * 119.99403 * 5.04265 * 15 13 11 38 38 H 1.09003 * 109.46616 * 64.78885 * 16 15 13 39 39 H 1.08993 * 109.47729 * 304.78355 * 16 15 13 40 40 H 0.97009 * 119.99393 * 184.99658 * 21 20 18 41 41 H 1.08995 * 117.49715 * 214.99983 * 26 17 16 42 42 H 1.09003 * 117.49834 * 0.02562 * 26 17 16 43 43 H 1.09005 * 117.49794 * 359.97438 * 27 17 16 44 44 H 1.08999 * 117.49412 * 144.97246 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7214 1.2492 5 7 3.5001 -0.6180 1.3108 6 6 4.4001 -1.4981 0.7731 7 6 5.6275 -1.0228 1.0577 8 7 5.4810 0.1115 1.7583 9 6 4.2095 0.3601 1.9138 10 7 2.0183 -0.6906 -1.1963 11 6 2.1470 -0.0182 -2.3572 12 8 1.8588 1.1593 -2.4115 13 6 2.6456 -0.7225 -3.5774 14 8 2.8467 -1.9188 -3.5477 15 7 2.8719 -0.0290 -4.7107 16 6 3.2542 -0.7337 -5.9367 17 6 3.5653 0.2853 -7.0348 18 6 2.3990 1.1213 -7.4950 19 1 2.2327 2.0986 -7.0664 20 6 1.5476 0.6411 -8.4674 21 7 1.8037 -0.5060 -9.0573 22 14 0.0305 1.6198 -8.9468 23 1 0.4418 2.9526 -9.4565 24 1 -0.7137 0.8922 -10.0061 25 1 -0.8432 1.7925 -7.7584 26 6 4.9445 0.9474 -7.0140 27 6 4.6141 -0.1004 -8.0799 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3632 0.5138 0.8900 31 1 1.6055 -0.2619 2.1369 32 1 1.7517 -1.7716 1.2055 33 1 4.1700 -2.3993 0.2241 34 1 6.5655 -1.4781 0.7759 35 1 3.7933 1.2081 2.4375 36 1 2.2490 -1.6318 -1.1528 37 1 2.7816 0.9369 -4.7144 38 1 2.4335 -1.3750 -6.2581 39 1 4.1377 -1.3427 -5.7454 40 1 1.2461 -0.8093 -9.7909 41 1 5.0083 1.9876 -7.3332 42 1 5.6304 0.6566 -6.2183 43 1 5.0827 -1.0799 -7.9850 44 1 4.4601 0.2503 -9.1005 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001323298429.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:42:41 Heat of formation + Delta-G solvation = 16.517429 kcal Electronic energy + Delta-G solvation = -26821.187556 eV Core-core repulsion = 22968.706353 eV Total energy + Delta-G solvation = -3852.481204 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.25454 -40.41259 -38.48932 -36.75316 -36.69322 -33.82232 -33.18534 -31.99599 -31.21172 -29.57396 -27.15145 -26.89174 -25.51252 -23.99703 -21.86206 -21.52863 -21.18760 -21.00471 -20.05539 -19.57370 -18.25578 -17.64341 -16.93455 -16.19491 -15.99326 -15.44552 -15.31954 -14.73574 -14.66298 -14.64801 -14.21499 -13.98249 -13.88910 -13.69142 -13.41100 -13.21242 -12.89566 -12.86450 -12.67771 -12.43480 -11.92345 -11.68555 -11.65514 -11.36510 -11.00972 -10.97365 -10.56663 -10.26757 -10.15454 -9.90236 -9.66025 -9.44928 -9.30521 -9.11287 -8.67719 -8.56132 -8.43216 -8.21047 -6.11177 -4.21022 1.68277 1.85554 2.43145 2.54921 3.04463 3.26344 3.31469 3.34497 3.50667 3.85881 4.07752 4.23819 4.33507 4.51589 4.57238 4.64864 4.79425 4.90893 4.97768 5.16256 5.22787 5.30452 5.32174 5.46770 5.55065 5.81205 5.93234 5.99423 6.10362 6.26209 6.37259 6.44916 6.56152 6.64057 6.72471 6.90736 6.95030 7.06373 7.08669 7.29772 7.47642 7.73784 7.78773 7.90516 8.06258 8.29113 8.45050 8.80980 9.46662 10.95801 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.016892 B = 0.003119 C = 0.002825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1657.169860 B = 8973.899624 C = 9909.547121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.126 3.874 3 H 0.099 0.901 4 C 0.097 3.903 5 N -0.459 5.459 6 C -0.050 4.050 7 C -0.029 4.029 8 N -0.495 5.495 9 C 0.180 3.820 10 N -0.704 5.704 11 C 0.513 3.487 12 O -0.515 6.515 13 C 0.496 3.504 14 O -0.541 6.541 15 N -0.664 5.664 16 C 0.159 3.841 17 C 0.021 3.979 18 C -0.502 4.502 19 H 0.061 0.939 20 C 0.074 3.926 21 N -0.876 5.876 22 Si 0.891 3.109 23 H -0.276 1.276 24 H -0.287 1.287 25 H -0.275 1.275 26 C -0.210 4.210 27 C -0.139 4.139 28 H 0.073 0.927 29 H 0.064 0.936 30 H 0.071 0.929 31 H 0.112 0.888 32 H 0.100 0.900 33 H 0.173 0.827 34 H 0.168 0.832 35 H 0.203 0.797 36 H 0.409 0.591 37 H 0.414 0.586 38 H 0.074 0.926 39 H 0.048 0.952 40 H 0.262 0.738 41 H 0.079 0.921 42 H 0.065 0.935 43 H 0.064 0.936 44 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.056 -2.390 20.615 20.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.020 3.980 3 H 0.117 0.883 4 C -0.026 4.026 5 N -0.143 5.143 6 C -0.182 4.182 7 C -0.177 4.177 8 N -0.213 5.213 9 C -0.102 4.102 10 N -0.359 5.359 11 C 0.294 3.706 12 O -0.389 6.389 13 C 0.275 3.725 14 O -0.420 6.420 15 N -0.314 5.314 16 C 0.037 3.963 17 C 0.020 3.980 18 C -0.539 4.539 19 H 0.079 0.921 20 C -0.130 4.130 21 N -0.511 5.511 22 Si 0.719 3.281 23 H -0.202 1.202 24 H -0.213 1.213 25 H -0.201 1.201 26 C -0.247 4.247 27 C -0.177 4.177 28 H 0.092 0.908 29 H 0.083 0.917 30 H 0.090 0.910 31 H 0.130 0.870 32 H 0.119 0.881 33 H 0.191 0.809 34 H 0.186 0.814 35 H 0.219 0.781 36 H 0.246 0.754 37 H 0.250 0.750 38 H 0.092 0.908 39 H 0.066 0.934 40 H 0.072 0.928 41 H 0.098 0.902 42 H 0.084 0.916 43 H 0.083 0.917 44 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -0.741 -2.067 20.732 20.848 hybrid contribution -1.525 -0.072 -0.779 1.714 sum -2.265 -2.139 19.952 20.194 Atomic orbital electron populations 1.22157 0.93351 1.03049 1.03727 1.21427 0.95174 0.98201 0.83175 0.88275 1.22282 0.77404 1.03655 0.99303 1.45512 1.06868 1.20254 1.41622 1.22762 0.89897 0.99069 1.06514 1.22312 0.97371 0.95052 1.02945 1.70289 1.16423 1.16160 1.18378 1.24993 0.87360 0.95741 1.02147 1.45737 1.66779 1.14715 1.08664 1.20520 0.78399 0.86943 0.84713 1.90760 1.48095 1.15366 1.84664 1.19869 0.80609 0.87386 0.84658 1.90706 1.52430 1.14419 1.84464 1.45902 1.64257 1.12327 1.08899 1.21225 0.99058 0.94476 0.81537 1.19020 0.88454 0.96123 0.94398 1.20345 1.08907 1.01997 1.22675 0.92077 1.24985 0.97489 0.94663 0.95897 1.69981 1.39042 1.19758 1.22369 0.86672 0.83161 0.80058 0.78236 1.20174 1.21255 1.20082 1.23038 1.01368 0.97947 1.02361 1.22476 1.03171 0.96337 0.95700 0.90804 0.91741 0.90962 0.86971 0.88146 0.80942 0.81426 0.78071 0.75430 0.75012 0.90784 0.93359 0.92782 0.90200 0.91631 0.91725 0.89372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.13 9.48 37.16 0.35 -0.78 16 2 C 0.13 1.00 2.81 -67.92 -0.19 0.81 16 3 H 0.10 0.98 7.58 -51.93 -0.39 0.58 16 4 C 0.10 0.50 5.65 -4.04 -0.02 0.47 16 5 N -0.46 -3.80 2.69 -118.58 -0.32 -4.12 16 6 C -0.05 -0.48 11.30 -16.56 -0.19 -0.67 16 7 C -0.03 -0.34 11.87 -17.81 -0.21 -0.55 16 8 N -0.49 -6.32 11.25 -14.67 -0.17 -6.49 16 9 C 0.18 1.74 12.56 -90.39 -1.14 0.60 16 10 N -0.70 -7.78 4.76 -54.23 -0.26 -8.04 16 11 C 0.51 7.97 7.85 -11.59 -0.09 7.88 16 12 O -0.51 -9.08 16.16 5.50 0.09 -8.99 16 13 C 0.50 9.04 7.88 -11.58 -0.09 8.95 16 14 O -0.54 -10.54 16.47 5.50 0.09 -10.45 16 15 N -0.66 -13.16 5.46 -60.73 -0.33 -13.50 16 16 C 0.16 3.51 5.53 -4.04 -0.02 3.49 16 17 C 0.02 0.49 1.47 -155.66 -0.23 0.26 16 18 C -0.50 -12.94 8.59 -34.44 -0.30 -13.23 16 19 H 0.06 1.57 7.82 -52.48 -0.41 1.16 16 20 C 0.07 1.95 5.43 -17.82 -0.10 1.85 16 21 N -0.88 -23.88 12.65 55.43 0.70 -23.18 16 22 Si 0.89 20.61 29.54 -169.99 -5.02 15.59 16 23 H -0.28 -6.34 7.11 56.52 0.40 -5.93 16 24 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 25 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 26 C -0.21 -4.39 9.96 -26.69 -0.27 -4.66 16 27 C -0.14 -3.13 9.14 -26.69 -0.24 -3.38 16 28 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.07 0.33 8.14 -51.93 -0.42 -0.10 16 31 H 0.11 0.27 8.14 -51.93 -0.42 -0.15 16 32 H 0.10 0.37 8.14 -51.93 -0.42 -0.06 16 33 H 0.17 1.30 8.06 -52.48 -0.42 0.88 16 34 H 0.17 1.65 8.06 -52.48 -0.42 1.23 16 35 H 0.20 1.24 8.06 -52.49 -0.42 0.82 16 36 H 0.41 4.09 8.04 -40.82 -0.33 3.76 16 37 H 0.41 8.19 7.84 -40.82 -0.32 7.87 16 38 H 0.07 1.82 8.14 -51.93 -0.42 1.39 16 39 H 0.05 1.03 8.05 -51.93 -0.42 0.61 16 40 H 0.26 6.91 8.32 -40.82 -0.34 6.57 16 41 H 0.08 1.66 8.14 -51.93 -0.42 1.24 16 42 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 43 H 0.06 1.37 8.14 -51.93 -0.42 0.95 16 44 H 0.09 2.14 8.14 -51.93 -0.42 1.71 16 LS Contribution 383.07 15.07 5.77 5.77 Total: -1.00 -32.25 383.07 -8.68 -40.93 By element: Atomic # 1 Polarization: 17.92 SS G_CDS: -6.50 Total: 11.42 kcal Atomic # 6 Polarization: 3.78 SS G_CDS: -2.73 Total: 1.05 kcal Atomic # 7 Polarization: -54.95 SS G_CDS: -0.37 Total: -55.32 kcal Atomic # 8 Polarization: -19.62 SS G_CDS: 0.18 Total: -19.44 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.02 Total: 15.59 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -32.25 -8.68 -40.93 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001323298429.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.447 kcal (2) G-P(sol) polarization free energy of solvation -32.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.676 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.930 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds