Wall clock time and date at job start Tue Mar 31 2020 14:02:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 N 1.40004 * 126.08498 * 2 1 4 4 C 1.31113 * 108.47249 * 180.02562 * 3 2 1 5 5 C 1.39670 * 108.34451 * 0.02562 * 4 3 2 6 6 C 1.35791 * 126.09632 * 180.02562 * 2 1 3 7 7 N 1.39199 * 126.25742 * 359.96431 * 6 2 1 8 8 C 1.34781 * 119.99618 * 206.19423 * 7 6 2 9 9 O 1.21394 * 119.99730 * 5.37628 * 8 7 6 10 10 C 1.49299 * 120.00083 * 185.37308 * 8 7 6 11 11 O 1.21371 * 120.00075 * 0.02562 * 10 8 7 12 12 N 1.34776 * 120.00389 * 180.02562 * 10 8 7 13 13 C 1.46498 * 120.00225 * 180.02562 * 12 10 8 14 14 C 1.53001 * 109.46801 * 179.97438 * 13 12 10 15 15 C 1.53001 * 109.46937 * 179.97438 * 14 13 12 16 16 C 1.50695 * 109.47493 * 180.02562 * 15 14 13 17 17 H 1.08005 * 119.99820 * 0.02562 * 16 15 14 18 18 C 1.37877 * 120.00583 * 179.97438 * 16 15 14 19 19 N 1.31517 * 119.99843 * 359.97438 * 18 16 15 20 20 Si 1.86798 * 120.00268 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.47046 * 90.00101 * 20 18 16 22 22 H 1.48502 * 109.47324 * 209.99728 * 20 18 16 23 23 H 1.48493 * 109.47365 * 330.00160 * 20 18 16 24 24 C 1.51282 * 109.61174 * 179.97438 * 5 4 3 25 25 C 1.54336 * 105.19815 * 342.78939 * 24 5 4 26 26 C 1.51370 * 142.15001 * 180.02562 * 4 3 2 27 27 H 1.08998 * 109.47128 * 268.89340 * 1 2 3 28 28 H 1.08994 * 109.47599 * 28.89878 * 1 2 3 29 29 H 1.09005 * 109.47141 * 148.90251 * 1 2 3 30 30 H 0.96995 * 120.00669 * 26.18732 * 7 6 2 31 31 H 0.97006 * 119.99517 * 359.97438 * 12 10 8 32 32 H 1.08994 * 109.47225 * 299.99503 * 13 12 10 33 33 H 1.09001 * 109.47131 * 60.00147 * 13 12 10 34 34 H 1.08995 * 109.47407 * 299.99462 * 14 13 12 35 35 H 1.08997 * 109.47237 * 60.00652 * 14 13 12 36 36 H 1.09003 * 109.47258 * 300.00282 * 15 14 13 37 37 H 1.09004 * 109.47124 * 59.99988 * 15 14 13 38 38 H 0.96992 * 119.99990 * 179.97438 * 19 18 16 39 39 H 1.08999 * 110.29425 * 223.85681 * 24 5 4 40 40 H 1.09006 * 110.37497 * 101.76936 * 24 5 4 41 41 H 1.09006 * 110.77517 * 144.80203 * 25 24 5 42 42 H 1.08999 * 110.77682 * 268.22052 * 25 24 5 43 43 H 1.08999 * 110.29881 * 78.28226 * 26 4 3 44 44 H 1.08997 * 110.29357 * 316.15242 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2896 1.1314 0.0000 4 6 3.5392 0.7347 -0.0006 5 6 3.5571 -0.6619 -0.0015 6 6 2.2650 -1.0972 -0.0005 7 7 1.8430 -2.4237 -0.0004 8 6 2.6371 -3.3834 0.5144 9 8 3.6757 -3.0809 1.0653 10 6 2.2394 -4.8184 0.4072 11 8 1.2013 -5.1209 -0.1440 12 7 3.0332 -5.7781 0.9223 13 6 2.6432 -7.1862 0.8166 14 6 3.7106 -8.0619 1.4761 15 6 3.3030 -9.5325 1.3662 16 6 4.3539 -10.3950 2.0163 17 1 5.2252 -9.9398 2.4635 18 6 4.2027 -11.7652 2.0411 19 7 3.1409 -12.3196 1.4979 20 14 5.5057 -12.8344 2.8463 21 1 5.1751 -13.0209 4.2820 22 1 5.5470 -14.1568 2.1721 23 1 6.8309 -12.1754 2.7252 24 6 4.9885 -1.1514 -0.0028 25 6 5.8314 0.0641 -0.4432 26 6 4.9595 1.2583 -0.0005 27 1 -0.3633 -0.0198 1.0275 28 1 -0.3634 0.8996 -0.4966 29 1 -0.3634 -0.8800 -0.5308 30 1 0.9775 -2.6575 -0.3706 31 1 3.8632 -5.5364 1.3625 32 1 1.6877 -7.3373 1.3188 33 1 2.5485 -7.4591 -0.2345 34 1 4.6659 -7.9108 0.9735 35 1 3.8057 -7.7892 2.5271 36 1 2.3477 -9.6833 1.8690 37 1 3.2075 -9.8055 0.3153 38 1 3.0347 -13.2835 1.5150 39 1 5.1072 -1.9708 -0.7118 40 1 5.2808 -1.4721 0.9971 41 1 6.7922 0.0753 0.0715 42 1 5.9707 0.0668 -1.5243 43 1 5.2427 1.5832 1.0006 44 1 5.0590 2.0813 -0.7082 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001336162227.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:02:30 Heat of formation + Delta-G solvation = 9.310013 kcal Electronic energy + Delta-G solvation = -26003.077090 eV Core-core repulsion = 22150.283350 eV Total energy + Delta-G solvation = -3852.793741 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.10894 -40.63227 -38.68842 -36.96446 -35.94653 -34.99077 -33.39241 -32.32104 -31.33732 -30.01013 -27.51929 -26.98344 -26.54523 -25.05029 -23.00712 -21.91431 -21.18586 -20.80990 -20.24108 -19.46773 -18.44427 -17.62797 -16.68603 -16.53355 -16.40534 -15.97017 -15.57218 -15.18151 -15.10983 -14.80305 -14.48967 -14.15767 -14.01607 -13.68954 -13.14343 -13.07984 -12.97115 -12.74180 -12.35902 -12.12016 -11.95613 -11.89388 -11.82201 -11.40511 -11.21944 -10.99438 -10.94711 -10.82682 -10.63928 -10.53842 -9.96666 -9.96384 -9.48149 -9.18468 -9.13827 -9.07449 -8.41612 -8.26174 -6.06396 -4.09565 0.91421 1.51260 1.73974 2.35378 2.47358 3.04400 3.28665 3.34517 3.35671 3.38775 3.65688 4.24096 4.41341 4.47903 4.58446 4.73268 4.84067 4.97833 5.00261 5.01382 5.23121 5.29738 5.40000 5.48969 5.56398 5.60304 5.61938 5.74351 5.87274 5.96365 5.99346 6.10698 6.13934 6.35846 6.46499 6.49986 6.60292 6.67361 6.88491 7.17986 7.45032 7.47607 7.56933 7.67942 7.83649 7.91791 8.32483 8.96875 9.55071 11.04860 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.023285 B = 0.002127 C = 0.001974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1202.211034 B =13162.607431 C =14181.351028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.102 3.898 2 N -0.386 5.386 3 N -0.268 5.268 4 C 0.063 3.937 5 C -0.243 4.243 6 C 0.314 3.686 7 N -0.629 5.629 8 C 0.514 3.486 9 O -0.477 6.477 10 C 0.508 3.492 11 O -0.522 6.522 12 N -0.685 5.685 13 C 0.113 3.887 14 C -0.123 4.123 15 C 0.024 3.976 16 C -0.523 4.523 17 H 0.056 0.944 18 C 0.057 3.943 19 N -0.894 5.894 20 Si 0.894 3.106 21 H -0.280 1.280 22 H -0.286 1.286 23 H -0.274 1.274 24 C -0.025 4.025 25 C -0.120 4.120 26 C -0.030 4.030 27 H 0.077 0.923 28 H 0.095 0.905 29 H 0.083 0.917 30 H 0.422 0.578 31 H 0.413 0.587 32 H 0.073 0.927 33 H 0.073 0.927 34 H 0.058 0.942 35 H 0.058 0.942 36 H 0.020 0.980 37 H 0.020 0.980 38 H 0.261 0.739 39 H 0.062 0.938 40 H 0.084 0.916 41 H 0.082 0.918 42 H 0.072 0.928 43 H 0.088 0.912 44 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.382 27.319 -4.355 27.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.039 4.039 2 N -0.173 5.173 3 N -0.090 5.090 4 C -0.104 4.104 5 C -0.257 4.257 6 C 0.096 3.904 7 N -0.280 5.280 8 C 0.295 3.705 9 O -0.347 6.347 10 C 0.287 3.713 11 O -0.399 6.399 12 N -0.337 5.337 13 C -0.008 4.008 14 C -0.161 4.161 15 C -0.013 4.013 16 C -0.561 4.561 17 H 0.074 0.926 18 C -0.145 4.145 19 N -0.533 5.533 20 Si 0.722 3.278 21 H -0.206 1.206 22 H -0.212 1.212 23 H -0.198 1.198 24 C -0.063 4.063 25 C -0.158 4.158 26 C -0.069 4.069 27 H 0.095 0.905 28 H 0.114 0.886 29 H 0.102 0.898 30 H 0.260 0.740 31 H 0.249 0.751 32 H 0.091 0.909 33 H 0.091 0.909 34 H 0.077 0.923 35 H 0.076 0.924 36 H 0.038 0.962 37 H 0.038 0.962 38 H 0.071 0.929 39 H 0.081 0.919 40 H 0.102 0.898 41 H 0.101 0.899 42 H 0.091 0.909 43 H 0.107 0.893 44 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -2.402 28.025 -4.376 28.466 hybrid contribution 0.638 -1.438 0.466 1.640 sum -1.764 26.587 -3.910 26.931 Atomic orbital electron populations 1.21855 0.73761 1.04661 1.03646 1.48682 1.06270 1.01495 1.60877 1.77177 1.00444 1.04475 1.26923 1.23107 0.94015 0.94666 0.98633 1.20256 0.93483 0.94798 1.17124 1.16935 0.89781 0.79976 1.03739 1.42381 1.22885 1.02851 1.59903 1.20482 0.84148 0.86892 0.78945 1.90825 1.22701 1.82693 1.38522 1.19571 0.85087 0.85629 0.81060 1.90791 1.23744 1.82832 1.42568 1.46058 1.24484 1.07299 1.55861 1.21909 1.00107 0.76581 1.02247 1.21937 0.96580 0.98121 0.99446 1.19033 0.97137 0.87466 0.97686 1.21188 1.06449 0.91426 1.37085 0.92551 1.25029 0.95692 0.98238 0.95501 1.69957 1.27660 1.10943 1.44720 0.86567 0.81994 0.79842 0.79442 1.20640 1.21198 1.19843 1.20316 0.87169 0.96535 1.02255 1.22418 0.98195 0.93686 1.01531 1.20552 0.85083 0.98496 1.02807 0.90490 0.88600 0.89809 0.74041 0.75120 0.90892 0.90865 0.92315 0.92359 0.96199 0.96168 0.92889 0.91929 0.89769 0.89927 0.90927 0.89325 0.90133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.63 11.40 59.84 0.68 1.31 16 2 N -0.39 -4.13 4.04 -67.06 -0.27 -4.41 16 3 N -0.27 -3.31 12.57 33.84 0.43 -2.89 16 4 C 0.06 0.73 8.08 -82.04 -0.66 0.06 16 5 C -0.24 -2.95 5.84 -104.48 -0.61 -3.57 16 6 C 0.31 3.69 7.46 -152.87 -1.14 2.55 16 7 N -0.63 -6.70 5.33 -11.78 -0.06 -6.76 16 8 C 0.51 6.32 7.78 -11.65 -0.09 6.23 16 9 O -0.48 -6.42 12.68 5.46 0.07 -6.36 16 10 C 0.51 6.87 7.88 -11.66 -0.09 6.78 16 11 O -0.52 -8.08 16.48 5.48 0.09 -7.99 16 12 N -0.69 -9.30 5.55 -60.78 -0.34 -9.63 16 13 C 0.11 1.81 5.67 -4.04 -0.02 1.78 16 14 C -0.12 -2.26 5.27 -26.73 -0.14 -2.41 16 15 C 0.02 0.59 4.97 -27.88 -0.14 0.46 16 16 C -0.52 -14.25 9.11 -34.44 -0.31 -14.56 16 17 H 0.06 1.48 7.74 -52.48 -0.41 1.08 16 18 C 0.06 1.59 5.46 -17.82 -0.10 1.50 16 19 N -0.89 -26.27 13.29 55.43 0.74 -25.53 16 20 Si 0.89 21.17 29.54 -169.99 -5.02 16.15 16 21 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 22 H -0.29 -6.74 7.11 56.52 0.40 -6.33 16 23 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 24 C -0.02 -0.26 4.93 -26.90 -0.13 -0.39 16 25 C -0.12 -0.90 7.06 -25.33 -0.18 -1.07 16 26 C -0.03 -0.24 6.77 -26.85 -0.18 -0.42 16 27 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.10 0.48 8.14 -51.93 -0.42 0.05 16 29 H 0.08 0.34 7.53 -51.93 -0.39 -0.05 16 30 H 0.42 3.63 7.66 -40.82 -0.31 3.32 16 31 H 0.41 5.01 7.94 -40.82 -0.32 4.68 16 32 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 33 H 0.07 1.21 8.14 -51.93 -0.42 0.78 16 34 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 35 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 36 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 38 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 39 H 0.06 0.69 8.07 -51.93 -0.42 0.27 16 40 H 0.08 0.96 7.29 -51.93 -0.38 0.58 16 41 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 42 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 43 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 44 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 LS Contribution 370.71 15.07 5.59 5.59 Total: -1.00 -33.44 370.71 -8.35 -41.79 By element: Atomic # 1 Polarization: 8.24 SS G_CDS: -6.44 Total: 1.80 kcal Atomic # 6 Polarization: 1.36 SS G_CDS: -3.12 Total: -1.76 kcal Atomic # 7 Polarization: -49.71 SS G_CDS: 0.49 Total: -49.22 kcal Atomic # 8 Polarization: -14.51 SS G_CDS: 0.16 Total: -14.35 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -33.44 -8.35 -41.79 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001336162227.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.099 kcal (2) G-P(sol) polarization free energy of solvation -33.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.789 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds