Wall clock time and date at job start Tue Mar 31 2020 14:02:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46492 * 1 3 3 N 1.40291 * 126.09416 * 2 1 4 4 C 1.31068 * 108.27188 * 179.90879 * 3 2 1 5 5 C 1.39296 * 108.07924 * 359.97438 * 4 3 2 6 6 C 1.34326 * 126.09091 * 179.97438 * 2 1 3 7 7 C 1.50825 * 128.03309 * 0.24361 * 6 2 1 8 8 C 1.53364 * 108.38091 * 163.36379 * 7 6 2 9 9 C 1.53104 * 109.51145 * 49.93411 * 8 7 6 10 10 C 1.50840 * 127.90166 * 180.09373 * 5 4 3 11 11 H 1.09004 * 109.67744 * 283.17364 * 10 5 4 12 12 N 1.46498 * 109.68410 * 43.72288 * 10 5 4 13 13 C 1.34774 * 120.00212 * 273.92520 * 12 10 5 14 14 O 1.21352 * 119.99951 * 359.97438 * 13 12 10 15 15 C 1.49452 * 120.00144 * 179.97438 * 13 12 10 16 16 O 1.21352 * 119.99904 * 0.02562 * 15 13 12 17 17 N 1.34774 * 120.00144 * 179.97438 * 15 13 12 18 18 C 1.46498 * 120.00212 * 180.02562 * 17 15 13 19 19 C 1.52996 * 109.47291 * 180.02562 * 18 17 15 20 20 C 1.50705 * 109.47193 * 180.02562 * 19 18 17 21 21 H 1.08004 * 119.99851 * 359.97438 * 20 19 18 22 22 C 1.37876 * 120.00166 * 180.02562 * 20 19 18 23 23 N 1.31519 * 119.99968 * 359.97438 * 22 20 19 24 24 Si 1.86802 * 120.00003 * 179.97438 * 22 20 19 25 25 H 1.48503 * 109.47066 * 59.99743 * 24 22 20 26 26 H 1.48500 * 109.46678 * 179.97438 * 24 22 20 27 27 H 1.48498 * 109.47096 * 299.99761 * 24 22 20 28 28 H 1.09002 * 109.47304 * 89.97381 * 1 2 3 29 29 H 1.09000 * 109.47787 * 209.97091 * 1 2 3 30 30 H 1.09005 * 109.47258 * 329.97365 * 1 2 3 31 31 H 1.08008 * 125.96155 * 180.02562 * 4 3 2 32 32 H 1.08996 * 109.68765 * 283.07342 * 7 6 2 33 33 H 1.09006 * 109.67956 * 43.59095 * 7 6 2 34 34 H 1.09004 * 109.46095 * 289.91661 * 8 7 6 35 35 H 1.09000 * 109.46358 * 169.94704 * 8 7 6 36 36 H 1.09002 * 109.46575 * 169.70674 * 9 8 7 37 37 H 1.08998 * 109.46170 * 49.72227 * 9 8 7 38 38 H 0.97002 * 119.99620 * 93.92590 * 12 10 5 39 39 H 0.97002 * 120.00168 * 0.02562 * 17 15 13 40 40 H 1.09007 * 109.47070 * 300.00236 * 18 17 15 41 41 H 1.09003 * 109.46924 * 59.99658 * 18 17 15 42 42 H 1.09000 * 109.46923 * 299.99690 * 19 18 17 43 43 H 1.08998 * 109.47296 * 60.00297 * 19 18 17 44 44 H 0.96999 * 119.99697 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 7 2.2914 1.1336 0.0000 4 6 3.5392 0.7325 0.0020 5 6 3.5454 -0.6605 0.0039 6 6 2.2562 -1.0855 0.0005 7 6 1.8436 -2.5362 -0.0039 8 6 3.0540 -3.3820 -0.4182 9 6 4.2695 -2.9814 0.4222 10 6 4.7398 -1.5818 0.0085 11 1 5.1761 -1.6221 -0.9896 12 7 5.7367 -1.0925 0.9640 13 6 6.6414 -0.1700 0.5809 14 8 6.6306 0.2551 -0.5557 15 6 7.6581 0.3295 1.5558 16 8 7.6692 -0.0959 2.6923 17 7 8.5632 1.2517 1.1726 18 6 9.5601 1.7409 2.1281 19 6 10.4585 2.7733 1.4441 20 6 11.4844 3.2761 2.4269 21 1 11.4943 2.8975 3.4384 22 6 12.4098 4.2202 2.0351 23 7 12.3974 4.6816 0.8036 24 14 13.6809 4.8439 3.2536 25 1 14.5084 3.7070 3.7311 26 1 14.5530 5.8458 2.5896 27 1 12.9922 5.4743 4.4083 28 1 -0.3634 0.0005 -1.0277 29 1 -0.3635 -0.8902 0.5134 30 1 -0.3634 0.8898 0.5143 31 1 4.4106 1.3706 0.0029 32 1 1.5165 -2.8279 0.9940 33 1 1.0306 -2.6844 -0.7147 34 1 3.2705 -3.2139 -1.4732 35 1 2.8324 -4.4369 -0.2565 36 1 5.0749 -3.6979 0.2607 37 1 3.9953 -2.9748 1.4772 38 1 5.7456 -1.4326 1.8724 39 1 8.5545 1.5915 0.2641 40 1 9.0545 2.2044 2.9754 41 1 10.1669 0.9064 2.4793 42 1 10.9641 2.3102 0.5967 43 1 9.8514 3.6078 1.0934 44 1 13.0486 5.3455 0.5279 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001345149073.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:02:27 Heat of formation + Delta-G solvation = -6.628508 kcal Electronic energy + Delta-G solvation = -26311.435260 eV Core-core repulsion = 22457.950373 eV Total energy + Delta-G solvation = -3853.484887 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.86463 -40.27776 -38.35981 -37.06768 -35.21996 -34.46041 -33.29806 -32.78756 -29.96978 -29.79705 -29.38021 -26.90465 -25.72951 -24.19355 -22.76394 -22.33253 -21.07774 -20.92303 -20.08580 -19.15001 -18.13815 -17.21137 -16.75206 -16.34580 -15.98480 -15.65951 -15.24528 -14.94987 -14.75701 -14.46940 -14.42354 -14.33769 -13.94911 -13.59003 -13.43594 -13.32338 -13.15500 -12.87939 -12.74957 -12.29647 -12.25651 -11.74158 -11.40018 -11.39056 -11.20465 -11.15197 -11.02383 -10.78211 -10.66361 -10.35781 -9.76431 -9.47711 -9.42219 -9.34364 -9.15602 -8.65215 -8.50876 -8.38696 -6.07547 -4.11214 1.58839 1.67623 2.24867 2.42989 2.82022 3.32477 3.36583 3.39401 3.49064 3.91950 4.10744 4.18762 4.35549 4.42354 4.53355 4.59378 4.75493 4.79597 4.82524 4.95931 5.03977 5.07390 5.14612 5.21821 5.29158 5.36863 5.47291 5.60159 5.76547 5.79163 5.90963 6.21854 6.25932 6.27483 6.47603 6.63976 6.73529 6.76815 7.14014 7.50333 7.52463 7.61217 7.73448 7.89866 7.99698 8.24975 8.38923 8.94189 9.53483 11.03897 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.025529 B = 0.002253 C = 0.002156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1096.510936 B =12422.951253 C =12984.520621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.101 3.899 2 N -0.371 5.371 3 N -0.301 5.301 4 C 0.077 3.923 5 C -0.253 4.253 6 C 0.090 3.910 7 C -0.057 4.057 8 C -0.108 4.108 9 C -0.127 4.127 10 C 0.225 3.775 11 H 0.099 0.901 12 N -0.697 5.697 13 C 0.509 3.491 14 O -0.517 6.517 15 C 0.496 3.504 16 O -0.534 6.534 17 N -0.686 5.686 18 C 0.119 3.881 19 C 0.011 3.989 20 C -0.524 4.524 21 H 0.059 0.941 22 C 0.059 3.941 23 N -0.892 5.892 24 Si 0.898 3.102 25 H -0.276 1.276 26 H -0.287 1.287 27 H -0.276 1.276 28 H 0.074 0.926 29 H 0.085 0.915 30 H 0.089 0.911 31 H 0.180 0.820 32 H 0.085 0.915 33 H 0.080 0.920 34 H 0.073 0.927 35 H 0.080 0.920 36 H 0.079 0.921 37 H 0.074 0.926 38 H 0.412 0.588 39 H 0.410 0.590 40 H 0.062 0.938 41 H 0.063 0.937 42 H 0.025 0.975 43 H 0.025 0.975 44 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.316 -18.114 -3.375 31.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.041 4.041 2 N -0.152 5.152 3 N -0.121 5.121 4 C -0.108 4.108 5 C -0.265 4.265 6 C -0.039 4.039 7 C -0.096 4.096 8 C -0.146 4.146 9 C -0.165 4.165 10 C 0.119 3.881 11 H 0.117 0.883 12 N -0.349 5.349 13 C 0.290 3.710 14 O -0.392 6.392 15 C 0.276 3.724 16 O -0.412 6.412 17 N -0.337 5.337 18 C -0.003 4.003 19 C -0.026 4.026 20 C -0.562 4.562 21 H 0.078 0.922 22 C -0.143 4.143 23 N -0.531 5.531 24 Si 0.726 3.274 25 H -0.201 1.201 26 H -0.212 1.212 27 H -0.201 1.201 28 H 0.092 0.908 29 H 0.103 0.897 30 H 0.108 0.892 31 H 0.197 0.803 32 H 0.104 0.896 33 H 0.099 0.901 34 H 0.092 0.908 35 H 0.098 0.902 36 H 0.098 0.902 37 H 0.092 0.908 38 H 0.248 0.752 39 H 0.246 0.754 40 H 0.081 0.919 41 H 0.081 0.919 42 H 0.043 0.957 43 H 0.043 0.957 44 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -26.144 -16.919 -3.506 31.338 hybrid contribution 1.176 -0.033 0.590 1.316 sum -24.968 -16.952 -2.917 30.320 Atomic orbital electron populations 1.21828 0.74503 1.04417 1.03314 1.48253 1.06418 1.03600 1.56884 1.77620 1.01555 1.07022 1.25931 1.23606 0.95001 0.94552 0.97630 1.20146 0.93740 0.94215 1.18436 1.20868 0.90817 0.90650 1.01590 1.20381 0.99100 0.87292 1.02788 1.21487 0.93139 0.99320 1.00696 1.21884 0.98462 0.95275 1.00929 1.19278 0.84677 0.90386 0.93744 0.88318 1.45795 1.31065 1.41958 1.16131 1.20458 0.82256 0.80103 0.88191 1.90766 1.72338 1.56398 1.19736 1.20020 0.82992 0.81595 0.87821 1.90727 1.72715 1.57960 1.19804 1.46227 1.30857 1.39573 1.17056 1.21922 0.88652 0.98222 0.91483 1.19350 0.93815 0.92876 0.96590 1.20980 1.14304 1.23444 0.97501 0.92233 1.25003 0.97691 0.96232 0.95354 1.69952 1.36239 1.30015 1.16874 0.86558 0.81166 0.78617 0.81094 1.20111 1.21248 1.20110 0.90767 0.89666 0.89194 0.80293 0.89630 0.90114 0.90813 0.90163 0.90212 0.90771 0.75201 0.75382 0.91918 0.91899 0.95664 0.95654 0.92727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.57 11.32 59.84 0.68 1.25 16 2 N -0.37 -3.83 4.00 -63.88 -0.26 -4.09 16 3 N -0.30 -4.18 12.59 30.55 0.38 -3.79 16 4 C 0.08 1.07 11.40 -17.48 -0.20 0.87 16 5 C -0.25 -2.88 5.60 -105.05 -0.59 -3.47 16 6 C 0.09 0.85 6.73 -82.33 -0.55 0.29 16 7 C -0.06 -0.29 5.83 -27.63 -0.16 -0.45 16 8 C -0.11 -0.50 5.90 -26.49 -0.16 -0.66 16 9 C -0.13 -0.80 5.39 -26.50 -0.14 -0.94 16 10 C 0.22 2.22 2.82 -68.84 -0.19 2.03 16 11 H 0.10 1.09 7.57 -51.93 -0.39 0.69 16 12 N -0.70 -8.06 5.00 -55.12 -0.28 -8.33 16 13 C 0.51 7.52 7.15 -11.59 -0.08 7.44 16 14 O -0.52 -8.49 15.40 5.49 0.08 -8.41 16 15 C 0.50 8.55 7.89 -11.59 -0.09 8.46 16 16 O -0.53 -10.14 16.48 5.49 0.09 -10.05 16 17 N -0.69 -12.57 5.55 -60.73 -0.34 -12.90 16 18 C 0.12 2.50 5.61 -4.04 -0.02 2.48 16 19 C 0.01 0.28 5.09 -27.88 -0.14 0.14 16 20 C -0.52 -14.49 9.11 -34.44 -0.31 -14.81 16 21 H 0.06 1.60 7.74 -52.48 -0.41 1.19 16 22 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 23 N -0.89 -26.30 13.29 55.43 0.74 -25.56 16 24 Si 0.90 21.42 29.54 -169.99 -5.02 16.40 16 25 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 26 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 27 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 28 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.08 0.25 7.90 -51.93 -0.41 -0.16 16 30 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.18 2.61 7.05 -52.48 -0.37 2.24 16 32 H 0.09 0.34 8.14 -51.93 -0.42 -0.08 16 33 H 0.08 0.29 8.14 -51.93 -0.42 -0.14 16 34 H 0.07 0.38 8.11 -51.93 -0.42 -0.04 16 35 H 0.08 0.22 8.14 -51.93 -0.42 -0.20 16 36 H 0.08 0.44 8.14 -51.93 -0.42 0.01 16 37 H 0.07 0.44 8.10 -51.93 -0.42 0.02 16 38 H 0.41 4.34 8.08 -40.82 -0.33 4.01 16 39 H 0.41 7.17 7.94 -40.82 -0.32 6.84 16 40 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 41 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 42 H 0.03 0.66 8.14 -51.93 -0.42 0.23 16 43 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 44 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 LS Contribution 370.68 15.07 5.59 5.59 Total: -1.00 -34.26 370.68 -7.51 -41.78 By element: Atomic # 1 Polarization: 11.62 SS G_CDS: -6.44 Total: 5.18 kcal Atomic # 6 Polarization: 6.27 SS G_CDS: -2.07 Total: 4.20 kcal Atomic # 7 Polarization: -54.94 SS G_CDS: 0.25 Total: -54.68 kcal Atomic # 8 Polarization: -18.64 SS G_CDS: 0.18 Total: -18.46 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -34.26 -7.51 -41.78 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001345149073.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.149 kcal (2) G-P(sol) polarization free energy of solvation -34.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.778 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds