Wall clock time and date at job start Tue Mar 31 2020 12:37:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08997 * 109.47207 * 2 1 4 4 C 1.50701 * 109.47000 * 119.99680 * 2 1 3 5 5 H 1.08005 * 119.99803 * 119.99241 * 4 2 1 6 6 C 1.37869 * 120.00059 * 300.00265 * 4 2 1 7 7 N 1.31512 * 120.00435 * 359.97438 * 6 4 2 8 8 Si 1.86809 * 120.00035 * 179.97438 * 6 4 2 9 9 H 1.48497 * 109.47087 * 179.97438 * 8 6 4 10 10 H 1.48500 * 109.46940 * 299.99740 * 8 6 4 11 11 H 1.48495 * 109.47038 * 59.99277 * 8 6 4 12 12 N 1.46503 * 109.46825 * 239.99921 * 2 1 3 13 13 C 1.46503 * 119.99952 * 299.99705 * 12 2 1 14 14 C 1.34778 * 119.99605 * 120.00560 * 12 2 1 15 15 O 1.21352 * 120.00388 * 5.35178 * 14 12 2 16 16 C 1.49313 * 119.99536 * 185.35191 * 14 12 2 17 17 O 1.21392 * 119.99752 * 5.97087 * 16 14 12 18 18 N 1.34771 * 119.99724 * 185.97435 * 16 14 12 19 19 C 1.39204 * 119.99637 * 180.02562 * 18 16 14 20 20 C 1.36213 * 126.27244 * 0.02562 * 19 18 16 21 21 C 1.39696 * 107.85870 * 180.02562 * 20 19 18 22 22 N 1.30846 * 108.45637 * 0.02562 * 21 20 19 23 23 N 1.35850 * 126.26936 * 179.71353 * 19 18 16 24 24 C 1.46503 * 126.09787 * 359.97438 * 23 19 18 25 25 C 1.53778 * 113.61539 * 219.13373 * 24 23 19 26 26 C 1.53952 * 87.02230 * 220.05050 * 25 24 23 27 27 C 1.53778 * 87.11066 * 25.36571 * 26 25 24 28 28 H 1.09003 * 109.46976 * 300.00758 * 1 2 3 29 29 H 1.09004 * 109.46894 * 60.00278 * 1 2 3 30 30 H 1.08997 * 109.47207 * 180.02562 * 1 2 3 31 31 H 0.96996 * 120.00652 * 179.97438 * 7 6 4 32 32 H 1.09000 * 109.46824 * 95.25284 * 13 12 2 33 33 H 1.08996 * 109.46959 * 215.25445 * 13 12 2 34 34 H 1.09004 * 109.47135 * 335.25684 * 13 12 2 35 35 H 0.96994 * 120.00610 * 359.97438 * 18 16 14 36 36 H 1.07994 * 126.07190 * 0.02562 * 20 19 18 37 37 H 1.07994 * 125.77026 * 180.02562 * 21 20 19 38 38 H 1.08993 * 112.85478 * 350.33801 * 24 23 19 39 39 H 1.09000 * 113.61770 * 334.57234 * 25 24 23 40 40 H 1.08996 * 113.61407 * 105.46955 * 25 24 23 41 41 H 1.08998 * 113.54001 * 270.81274 * 26 25 24 42 42 H 1.09006 * 113.74235 * 139.94485 * 26 25 24 43 43 H 1.08997 * 113.61459 * 220.09094 * 27 26 25 44 44 H 1.09003 * 113.61756 * 89.18896 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.6532 -1.5886 1.1314 6 6 1.6992 -0.2393 2.4827 7 7 0.9435 0.8302 2.6034 8 14 2.3213 -1.1203 4.0080 9 1 1.8268 -0.4198 5.2204 10 1 1.8257 -2.5201 4.0078 11 1 3.8062 -1.1210 4.0082 12 7 2.0183 -0.6906 -1.1962 13 6 1.6644 -2.0933 -1.4280 14 6 2.7932 -0.0356 -2.0833 15 8 3.1668 1.0941 -1.8448 16 6 3.1921 -0.7001 -3.3596 17 8 2.7318 -1.7856 -3.6483 18 7 4.0631 -0.0946 -4.1909 19 6 4.4345 -0.7138 -5.3810 20 6 3.9988 -1.9237 -5.8301 21 6 4.6144 -2.1715 -7.0594 22 7 5.3907 -1.1578 -7.3456 23 7 5.2934 -0.2194 -6.3102 24 6 5.9961 1.0641 -6.2397 25 6 6.0858 1.7925 -7.5911 26 6 7.5231 2.1781 -7.1969 27 6 7.5273 0.9320 -6.2958 28 1 -0.3633 0.5140 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 0.7088 1.1615 3.4843 32 1 0.7903 -2.1449 -2.0772 33 1 2.5009 -2.6052 -1.9034 34 1 1.4385 -2.5731 -0.4757 35 1 4.4306 0.7729 -3.9604 36 1 3.3014 -2.5757 -5.3254 37 1 4.4734 -3.0509 -7.6701 38 1 5.6421 1.6964 -5.4255 39 1 6.0330 1.1250 -8.4512 40 1 5.4111 2.6446 -7.6734 41 1 7.5865 3.1161 -6.6453 42 1 8.2341 2.1230 -8.0214 43 1 8.0147 1.0905 -5.3338 44 1 7.8695 0.0288 -6.8010 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001348280533.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:37:01 Heat of formation + Delta-G solvation = 52.963205 kcal Electronic energy + Delta-G solvation = -27078.089250 eV Core-core repulsion = 23227.188454 eV Total energy + Delta-G solvation = -3850.900796 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.70156 -40.29547 -38.68886 -38.10878 -36.02135 -34.79446 -32.85126 -31.62732 -29.70494 -29.12776 -26.37947 -26.05722 -25.55163 -25.35387 -24.73206 -22.19546 -21.49327 -20.16543 -19.72875 -19.04011 -18.30599 -17.04649 -16.49431 -16.39774 -15.92595 -15.78338 -15.50817 -15.12185 -14.98632 -14.50049 -14.04839 -13.74722 -13.42899 -13.26636 -13.07192 -12.86286 -12.62765 -12.52115 -12.46413 -11.85568 -11.70654 -11.51138 -11.19190 -11.16347 -11.03871 -10.96604 -10.91132 -10.85414 -10.81610 -10.50312 -10.35220 -10.24927 -9.31549 -9.01851 -8.97489 -8.52739 -8.18280 -7.84670 -6.17317 -4.26137 1.31183 1.90021 2.09855 2.74664 2.88757 3.23929 3.28972 3.31064 3.57247 3.82103 4.01743 4.15071 4.30637 4.32273 4.42560 4.62198 4.78441 4.95259 5.14606 5.25275 5.36661 5.40998 5.47316 5.54167 5.56499 5.63423 5.79228 5.93163 5.98574 6.11935 6.15931 6.48171 6.60345 6.67130 6.70322 6.82957 6.89374 7.00824 7.16410 7.29843 7.58912 7.66542 7.73838 7.88427 8.01594 8.24501 8.47167 8.77986 9.40308 10.88168 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.020303 B = 0.002892 C = 0.002731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1378.799456 B = 9680.163687 C =10249.321445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.256 3.744 3 H 0.067 0.933 4 C -0.531 4.531 5 H 0.062 0.938 6 C 0.067 3.933 7 N -0.887 5.887 8 Si 0.902 3.098 9 H -0.285 1.285 10 H -0.275 1.275 11 H -0.276 1.276 12 N -0.548 5.548 13 C 0.079 3.921 14 C 0.498 3.502 15 O -0.534 6.534 16 C 0.515 3.485 17 O -0.482 6.482 18 N -0.630 5.630 19 C 0.307 3.693 20 C -0.281 4.281 21 C 0.058 3.942 22 N -0.290 5.290 23 N -0.377 5.377 24 C 0.127 3.873 25 C -0.137 4.137 26 C -0.139 4.139 27 C -0.143 4.143 28 H 0.097 0.903 29 H 0.013 0.987 30 H 0.034 0.966 31 H 0.266 0.734 32 H 0.052 0.948 33 H 0.075 0.925 34 H 0.080 0.920 35 H 0.420 0.580 36 H 0.173 0.827 37 H 0.185 0.815 38 H 0.118 0.882 39 H 0.100 0.900 40 H 0.075 0.925 41 H 0.086 0.914 42 H 0.078 0.922 43 H 0.076 0.924 44 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.294 -0.929 -17.605 19.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.157 3.843 3 H 0.085 0.915 4 C -0.569 4.569 5 H 0.080 0.920 6 C -0.136 4.136 7 N -0.524 5.524 8 Si 0.729 3.271 9 H -0.211 1.211 10 H -0.201 1.201 11 H -0.202 1.202 12 N -0.278 5.278 13 C -0.064 4.064 14 C 0.278 3.722 15 O -0.413 6.413 16 C 0.297 3.703 17 O -0.353 6.353 18 N -0.279 5.279 19 C 0.088 3.912 20 C -0.312 4.312 21 C -0.128 4.128 22 N -0.112 5.112 23 N -0.165 5.165 24 C 0.025 3.975 25 C -0.175 4.175 26 C -0.177 4.177 27 C -0.181 4.181 28 H 0.116 0.884 29 H 0.032 0.968 30 H 0.053 0.947 31 H 0.076 0.924 32 H 0.071 0.929 33 H 0.093 0.907 34 H 0.098 0.902 35 H 0.257 0.743 36 H 0.191 0.809 37 H 0.202 0.798 38 H 0.136 0.864 39 H 0.118 0.882 40 H 0.094 0.906 41 H 0.105 0.895 42 H 0.097 0.903 43 H 0.095 0.905 44 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 8.852 -0.391 -18.235 20.274 hybrid contribution -0.120 -0.364 1.600 1.646 sum 8.731 -0.755 -16.635 18.802 Atomic orbital electron populations 1.22112 0.97405 0.99973 1.01112 1.19200 0.91335 0.94545 0.79268 0.91542 1.21228 1.32420 1.13305 0.89973 0.91965 1.24876 0.94763 0.94925 0.99005 1.69854 1.35994 1.22446 1.24142 0.86497 0.79270 0.79628 0.81689 1.21093 1.20076 1.20157 1.48283 1.45244 1.12540 1.21758 1.21991 1.00927 0.81462 1.02007 1.19391 0.82085 0.86682 0.84039 1.90730 1.55060 1.18603 1.76957 1.20908 0.78464 0.85471 0.85418 1.90656 1.51526 1.19508 1.73639 1.42605 1.44612 1.23432 1.17235 1.18209 0.94490 0.93438 0.85065 1.21699 1.11731 0.98178 0.99580 1.23738 0.95031 0.97710 0.96344 1.77307 1.24627 1.00380 1.08854 1.48849 1.36018 1.16599 1.15021 1.23005 0.92839 0.81033 1.00620 1.23317 0.97263 1.00068 0.96828 1.22749 0.97016 0.97844 1.00092 1.23380 0.93858 0.99711 1.01158 0.88417 0.96782 0.94676 0.92436 0.92929 0.90675 0.90156 0.74265 0.80948 0.79784 0.86390 0.88190 0.90622 0.89538 0.90332 0.90521 0.88660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.40 8.97 37.16 0.33 -3.07 16 2 C 0.26 6.28 2.63 -69.08 -0.18 6.09 16 3 H 0.07 1.85 6.91 -51.93 -0.36 1.49 16 4 C -0.53 -13.86 7.95 -34.44 -0.27 -14.14 16 5 H 0.06 1.60 7.42 -52.48 -0.39 1.21 16 6 C 0.07 1.77 5.30 -17.82 -0.09 1.68 16 7 N -0.89 -24.18 11.32 55.43 0.63 -23.55 16 8 Si 0.90 20.46 29.54 -169.99 -5.02 15.44 16 9 H -0.29 -6.43 7.11 56.52 0.40 -6.03 16 10 H -0.28 -6.13 7.11 56.52 0.40 -5.72 16 11 H -0.28 -6.29 7.11 56.52 0.40 -5.88 16 12 N -0.55 -11.56 2.75 -175.82 -0.48 -12.05 16 13 C 0.08 1.42 8.18 59.85 0.49 1.91 16 14 C 0.50 9.95 7.72 -11.65 -0.09 9.86 16 15 O -0.53 -11.77 15.83 5.50 0.09 -11.68 16 16 C 0.51 8.62 7.66 -11.65 -0.09 8.53 16 17 O -0.48 -8.20 10.50 5.46 0.06 -8.14 16 18 N -0.63 -8.97 5.40 -11.80 -0.06 -9.03 16 19 C 0.31 4.32 7.68 -152.85 -1.17 3.14 16 20 C -0.28 -3.92 9.65 -39.77 -0.38 -4.30 16 21 C 0.06 0.69 12.00 -17.43 -0.21 0.49 16 22 N -0.29 -3.74 12.02 30.59 0.37 -3.37 16 23 N -0.38 -4.70 3.71 -53.01 -0.20 -4.90 16 24 C 0.13 1.22 4.63 -67.11 -0.31 0.91 16 25 C -0.14 -1.11 7.78 -25.83 -0.20 -1.31 16 26 C -0.14 -0.92 8.09 -25.83 -0.21 -1.13 16 27 C -0.14 -1.19 7.88 -25.92 -0.20 -1.39 16 28 H 0.10 2.46 6.07 -51.93 -0.32 2.15 16 29 H 0.01 0.29 8.14 -51.93 -0.42 -0.14 16 30 H 0.03 0.75 7.67 -51.93 -0.40 0.35 16 31 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 32 H 0.05 0.88 8.10 -51.93 -0.42 0.46 16 33 H 0.07 1.27 5.95 -51.93 -0.31 0.97 16 34 H 0.08 1.48 7.10 -51.93 -0.37 1.11 16 35 H 0.42 5.31 7.23 -40.82 -0.30 5.02 16 36 H 0.17 2.53 5.83 -52.49 -0.31 2.23 16 37 H 0.19 1.55 8.06 -52.49 -0.42 1.13 16 38 H 0.12 0.98 7.15 -51.93 -0.37 0.61 16 39 H 0.10 0.94 7.75 -51.93 -0.40 0.53 16 40 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 42 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 43 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 44 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 LS Contribution 360.92 15.07 5.44 5.44 Total: -1.00 -29.83 360.92 -7.81 -37.64 By element: Atomic # 1 Polarization: 12.96 SS G_CDS: -6.03 Total: 6.93 kcal Atomic # 6 Polarization: 9.87 SS G_CDS: -2.60 Total: 7.27 kcal Atomic # 7 Polarization: -53.15 SS G_CDS: 0.25 Total: -52.90 kcal Atomic # 8 Polarization: -19.96 SS G_CDS: 0.14 Total: -19.82 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -5.02 Total: 15.44 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -29.83 -7.81 -37.64 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001348280533.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.603 kcal (2) G-P(sol) polarization free energy of solvation -29.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.640 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds