Wall clock time and date at job start Tue Mar 31 2020 12:37:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09005 * 109.47204 * 2 1 4 4 C 1.50697 * 109.47486 * 239.99779 * 2 1 3 5 5 H 1.07997 * 119.99884 * 245.65996 * 4 2 1 6 6 C 1.37883 * 119.99801 * 65.65534 * 4 2 1 7 7 N 1.31509 * 119.99915 * 197.82666 * 6 4 2 8 8 Si 1.86794 * 119.99860 * 18.10195 * 6 4 2 9 9 H 1.48504 * 109.46909 * 179.72582 * 8 6 4 10 10 H 1.48506 * 109.47153 * 299.72231 * 8 6 4 11 11 H 1.48496 * 109.47306 * 59.72549 * 8 6 4 12 12 N 1.46503 * 109.47141 * 119.99354 * 2 1 3 13 13 C 1.46502 * 119.99843 * 60.00429 * 12 2 1 14 14 C 1.34773 * 120.00174 * 240.00220 * 12 2 1 15 15 O 1.21363 * 120.00161 * 5.67759 * 14 12 2 16 16 C 1.49311 * 120.00024 * 185.68328 * 14 12 2 17 17 O 1.21396 * 119.99620 * 5.78021 * 16 14 12 18 18 N 1.34774 * 120.00288 * 185.78806 * 16 14 12 19 19 C 1.39194 * 120.00238 * 180.02562 * 18 16 14 20 20 C 1.36212 * 126.27322 * 0.02562 * 19 18 16 21 21 C 1.39690 * 107.86315 * 179.97438 * 20 19 18 22 22 N 1.30859 * 108.45608 * 0.02562 * 21 20 19 23 23 N 1.35851 * 126.27102 * 179.71208 * 19 18 16 24 24 C 1.46501 * 126.10093 * 0.02901 * 23 19 18 25 25 C 1.53784 * 113.61624 * 219.13949 * 24 23 19 26 26 C 1.53952 * 87.01843 * 220.04819 * 25 24 23 27 27 C 1.53779 * 113.61437 * 121.53135 * 24 23 19 28 28 H 1.09000 * 109.47154 * 294.27454 * 1 2 3 29 29 H 1.08996 * 109.47400 * 54.27751 * 1 2 3 30 30 H 1.09004 * 109.47024 * 174.27808 * 1 2 3 31 31 H 0.97003 * 120.00099 * 355.23535 * 7 6 4 32 32 H 1.08995 * 109.47144 * 95.61100 * 13 12 2 33 33 H 1.08996 * 109.46873 * 215.61496 * 13 12 2 34 34 H 1.08997 * 109.47040 * 335.61767 * 13 12 2 35 35 H 0.97004 * 119.99754 * 359.97438 * 18 16 14 36 36 H 1.07999 * 126.07044 * 359.95148 * 20 19 18 37 37 H 1.07998 * 125.77414 * 180.02562 * 21 20 19 38 38 H 1.09000 * 112.84636 * 350.33548 * 24 23 19 39 39 H 1.09000 * 113.60925 * 334.56176 * 25 24 23 40 40 H 1.08993 * 113.61617 * 105.46698 * 25 24 23 41 41 H 1.09005 * 113.54031 * 270.81101 * 26 25 24 42 42 H 1.09000 * 113.74586 * 139.94096 * 26 25 24 43 43 H 1.09003 * 113.61236 * 254.53251 * 27 24 23 44 44 H 1.08997 * 113.61806 * 25.43090 * 27 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.5758 -1.6387 -1.1338 6 6 1.7981 -0.1753 -2.4794 7 7 1.9106 -0.9307 -3.5500 8 14 1.3284 1.6244 -2.6512 9 1 1.1390 1.9516 -4.0873 10 1 0.0642 1.8786 -1.9147 11 1 2.4086 2.4739 -2.0883 12 7 2.0183 -0.6905 1.1963 13 6 1.6644 -2.0931 1.4282 14 6 2.7931 -0.0354 2.0834 15 8 3.0016 1.1522 1.9462 16 6 3.3950 -0.7709 3.2350 17 8 3.2742 -1.9762 3.3152 18 7 4.0722 -0.0967 4.1854 19 6 4.6338 -0.7824 5.2586 20 6 4.5780 -2.1262 5.4745 21 6 5.2662 -2.3989 6.6591 22 7 5.7205 -1.2712 7.1432 23 7 5.3431 -0.2348 6.2797 24 6 5.6544 1.1866 6.4496 25 6 7.0734 1.4471 6.9819 26 6 6.4563 2.5566 7.8528 27 6 5.1328 1.7780 7.7698 28 1 -0.3633 0.4225 0.9368 29 1 -0.3634 0.6000 -0.8343 30 1 -0.3633 -1.0226 -0.1025 31 1 2.2251 -1.8446 -3.4679 32 1 2.4644 -2.7353 1.0600 33 1 1.5261 -2.2610 2.4962 34 1 0.7395 -2.3264 0.9008 35 1 4.1689 0.8663 4.1210 36 1 4.0882 -2.8520 4.8422 37 1 5.4008 -3.3752 7.1006 38 1 5.4004 1.7831 5.5734 39 1 7.4829 0.6172 7.5577 40 1 7.7628 1.8185 6.2238 41 1 6.4227 3.5285 7.3604 42 1 6.8712 2.6062 8.8595 43 1 4.2577 2.4161 7.6468 44 1 5.0107 1.0387 8.5614 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001348280547.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:37:04 Heat of formation + Delta-G solvation = 54.642772 kcal Electronic energy + Delta-G solvation = -27157.906201 eV Core-core repulsion = 23307.078237 eV Total energy + Delta-G solvation = -3850.827965 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.75817 -40.40204 -38.75505 -38.23548 -36.17330 -34.89258 -32.83772 -31.67448 -30.38333 -29.25617 -26.53425 -26.09803 -25.60828 -25.20007 -24.56486 -22.24020 -21.50678 -20.15067 -19.75698 -19.05472 -18.34507 -17.64684 -16.98774 -16.52204 -16.13184 -15.83687 -15.60054 -15.15449 -15.12411 -14.10502 -14.07520 -13.95198 -13.45078 -13.31948 -13.13890 -12.90629 -12.89315 -12.69136 -12.58200 -12.14347 -11.86590 -11.79246 -11.55194 -11.42840 -11.24223 -11.08689 -11.00684 -10.94083 -10.60177 -10.55926 -10.02576 -9.85963 -9.21661 -9.12192 -9.04523 -8.44577 -8.23505 -8.00679 -6.60089 -4.24819 1.23056 1.83141 2.02375 2.66705 2.83844 3.29005 3.40264 3.44842 3.52754 3.70820 3.97638 4.10757 4.26586 4.36727 4.38528 4.47722 4.74371 4.90951 5.12283 5.20706 5.32091 5.36976 5.42016 5.49815 5.52910 5.58968 5.72430 5.79183 5.90438 6.05987 6.07770 6.19262 6.29759 6.37917 6.45095 6.63442 6.76245 6.78332 6.85659 7.03175 7.15523 7.56053 7.64922 7.70694 8.00419 8.22574 8.30839 8.76042 9.44107 10.78710 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.020295 B = 0.003063 C = 0.002811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1379.289148 B = 9139.929867 C = 9957.881437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.233 3.767 3 H 0.058 0.942 4 C -0.617 4.617 5 H 0.064 0.936 6 C 0.039 3.961 7 N -0.895 5.895 8 Si 1.039 2.961 9 H -0.282 1.282 10 H -0.271 1.271 11 H -0.278 1.278 12 N -0.543 5.543 13 C 0.085 3.915 14 C 0.500 3.500 15 O -0.538 6.538 16 C 0.516 3.484 17 O -0.480 6.480 18 N -0.629 5.629 19 C 0.306 3.694 20 C -0.279 4.279 21 C 0.058 3.942 22 N -0.289 5.289 23 N -0.376 5.376 24 C 0.127 3.873 25 C -0.137 4.137 26 C -0.139 4.139 27 C -0.142 4.142 28 H 0.029 0.971 29 H 0.069 0.931 30 H 0.053 0.947 31 H 0.270 0.730 32 H 0.059 0.941 33 H 0.075 0.925 34 H 0.073 0.927 35 H 0.420 0.580 36 H 0.173 0.827 37 H 0.186 0.814 38 H 0.118 0.882 39 H 0.100 0.900 40 H 0.075 0.925 41 H 0.086 0.914 42 H 0.078 0.922 43 H 0.076 0.924 44 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.171 3.274 21.435 22.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.132 3.868 3 H 0.075 0.925 4 C -0.655 4.655 5 H 0.082 0.918 6 C -0.168 4.168 7 N -0.528 5.528 8 Si 0.867 3.133 9 H -0.208 1.208 10 H -0.198 1.198 11 H -0.204 1.204 12 N -0.273 5.273 13 C -0.058 4.058 14 C 0.280 3.720 15 O -0.417 6.417 16 C 0.298 3.702 17 O -0.350 6.350 18 N -0.278 5.278 19 C 0.087 3.913 20 C -0.311 4.311 21 C -0.128 4.128 22 N -0.111 5.111 23 N -0.165 5.165 24 C 0.025 3.975 25 C -0.175 4.175 26 C -0.177 4.177 27 C -0.181 4.181 28 H 0.048 0.952 29 H 0.087 0.913 30 H 0.073 0.927 31 H 0.080 0.920 32 H 0.077 0.923 33 H 0.093 0.907 34 H 0.091 0.909 35 H 0.257 0.743 36 H 0.190 0.810 37 H 0.203 0.797 38 H 0.136 0.864 39 H 0.118 0.882 40 H 0.094 0.906 41 H 0.105 0.895 42 H 0.097 0.903 43 H 0.094 0.906 44 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 5.348 4.829 21.112 22.308 hybrid contribution 0.151 -1.216 0.307 1.263 sum 5.500 3.613 21.419 22.407 Atomic orbital electron populations 1.22544 0.97930 1.01731 0.99991 1.19444 0.91037 0.94680 0.81656 0.92464 1.22138 1.41860 1.10775 0.90678 0.91800 1.25688 0.94295 1.05102 0.91701 1.70867 1.40914 1.09707 1.31346 0.84134 0.77452 0.75282 0.76433 1.20765 1.19789 1.20423 1.47992 1.45138 1.12881 1.21244 1.21951 1.01394 0.80977 1.01462 1.19408 0.81928 0.87113 0.83509 1.90719 1.61319 1.14377 1.75282 1.20740 0.78830 0.87686 0.82925 1.90674 1.55412 1.13838 1.75112 1.42559 1.52308 1.12221 1.20732 1.18184 0.95769 0.91556 0.85802 1.21704 1.13391 0.93231 1.02747 1.23748 0.96744 0.97331 0.94955 1.77319 1.24324 0.94487 1.14930 1.48851 1.43297 1.06907 1.17401 1.23008 0.98760 0.76272 0.99472 1.23321 0.94849 0.99568 0.99765 1.22750 0.96244 0.97622 1.01077 1.23378 0.98222 0.99634 0.96830 0.95183 0.91277 0.92748 0.92000 0.92259 0.90673 0.90857 0.74276 0.80950 0.79731 0.86428 0.88159 0.90581 0.89543 0.90304 0.90574 0.88646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.39 8.74 37.15 0.32 -3.07 16 2 C 0.23 5.41 2.21 -69.09 -0.15 5.26 16 3 H 0.06 1.42 5.56 -51.93 -0.29 1.13 16 4 C -0.62 -16.53 8.67 -34.44 -0.30 -16.83 16 5 H 0.06 1.85 7.80 -52.49 -0.41 1.44 16 6 C 0.04 1.08 5.34 -17.82 -0.10 0.98 16 7 N -0.90 -26.38 13.70 55.43 0.76 -25.62 16 8 Si 1.04 24.23 26.45 -169.99 -4.50 19.73 16 9 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 10 H -0.27 -5.74 5.51 56.52 0.31 -5.43 16 11 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 12 N -0.54 -11.19 2.75 -175.83 -0.48 -11.67 16 13 C 0.08 1.52 8.36 59.85 0.50 2.02 16 14 C 0.50 9.69 7.72 -11.65 -0.09 9.60 16 15 O -0.54 -11.25 15.83 5.49 0.09 -11.16 16 16 C 0.52 8.49 7.66 -11.65 -0.09 8.40 16 17 O -0.48 -8.14 10.51 5.46 0.06 -8.09 16 18 N -0.63 -8.72 5.40 -11.80 -0.06 -8.78 16 19 C 0.31 4.22 7.68 -152.86 -1.17 3.05 16 20 C -0.28 -3.87 9.65 -39.77 -0.38 -4.25 16 21 C 0.06 0.69 12.00 -17.42 -0.21 0.48 16 22 N -0.29 -3.67 12.02 30.59 0.37 -3.30 16 23 N -0.38 -4.60 3.71 -53.02 -0.20 -4.79 16 24 C 0.13 1.17 4.63 -67.12 -0.31 0.86 16 25 C -0.14 -1.09 7.78 -25.83 -0.20 -1.29 16 26 C -0.14 -0.87 8.09 -25.83 -0.21 -1.08 16 27 C -0.14 -1.11 7.88 -25.92 -0.20 -1.32 16 28 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.07 1.46 4.85 -51.93 -0.25 1.21 16 30 H 0.05 1.09 6.90 -51.93 -0.36 0.73 16 31 H 0.27 7.92 8.73 -40.82 -0.36 7.56 16 32 H 0.06 1.10 8.09 -51.93 -0.42 0.68 16 33 H 0.07 1.20 6.00 -51.93 -0.31 0.89 16 34 H 0.07 1.28 6.55 -51.93 -0.34 0.94 16 35 H 0.42 5.07 7.23 -40.82 -0.29 4.78 16 36 H 0.17 2.53 5.83 -52.49 -0.31 2.22 16 37 H 0.19 1.54 8.06 -52.49 -0.42 1.11 16 38 H 0.12 0.93 7.15 -51.93 -0.37 0.56 16 39 H 0.10 0.93 7.74 -51.93 -0.40 0.53 16 40 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.09 0.45 8.14 -51.93 -0.42 0.02 16 42 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 43 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 44 H 0.10 0.87 8.14 -51.93 -0.42 0.44 16 LS Contribution 355.81 15.07 5.36 5.36 Total: -1.00 -31.31 355.81 -7.15 -38.46 By element: Atomic # 1 Polarization: 12.99 SS G_CDS: -5.95 Total: 7.04 kcal Atomic # 6 Polarization: 5.41 SS G_CDS: -2.59 Total: 2.82 kcal Atomic # 7 Polarization: -54.54 SS G_CDS: 0.38 Total: -54.16 kcal Atomic # 8 Polarization: -19.40 SS G_CDS: 0.14 Total: -19.25 kcal Atomic # 14 Polarization: 24.23 SS G_CDS: -4.50 Total: 19.73 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -31.31 -7.15 -38.46 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001348280547.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.102 kcal (2) G-P(sol) polarization free energy of solvation -31.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.459 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds