Wall clock time and date at job start Tue Mar 31 2020 12:37:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09003 * 109.47328 * 2 1 4 4 C 1.50705 * 109.47186 * 119.99409 * 2 1 3 5 5 H 1.07997 * 120.00070 * 115.48022 * 4 2 1 6 6 C 1.37873 * 119.99944 * 295.49132 * 4 2 1 7 7 N 1.31514 * 120.00047 * 357.98416 * 6 4 2 8 8 Si 1.86799 * 119.99961 * 178.26669 * 6 4 2 9 9 H 1.48500 * 109.47452 * 264.73901 * 8 6 4 10 10 H 1.48503 * 109.47002 * 24.74272 * 8 6 4 11 11 H 1.48503 * 109.47235 * 144.73876 * 8 6 4 12 12 N 1.46503 * 109.47411 * 239.99362 * 2 1 3 13 13 C 1.46495 * 120.00160 * 300.00365 * 12 2 1 14 14 C 1.34774 * 119.99799 * 120.00148 * 12 2 1 15 15 O 1.21367 * 120.00350 * 5.62477 * 14 12 2 16 16 C 1.49327 * 120.00078 * 185.62841 * 14 12 2 17 17 O 1.21407 * 119.99832 * 5.58344 * 16 14 12 18 18 N 1.34777 * 120.00288 * 185.58591 * 16 14 12 19 19 C 1.40475 * 119.99908 * 179.97438 * 18 16 14 20 20 C 1.40332 * 126.11784 * 359.68623 * 19 18 16 21 21 N 1.30827 * 108.21255 * 179.85470 * 20 19 18 22 22 N 1.40059 * 108.36427 * 0.40767 * 21 20 19 23 23 C 1.46500 * 125.99610 * 179.75862 * 22 21 20 24 24 C 1.53780 * 113.61344 * 194.11077 * 23 22 21 25 25 C 1.53955 * 87.01709 * 220.04717 * 24 23 22 26 26 C 1.53782 * 113.61331 * 96.50083 * 23 22 21 27 27 C 1.35224 * 108.00887 * 359.73859 * 22 21 20 28 28 H 1.08999 * 109.46788 * 297.99356 * 1 2 3 29 29 H 1.09000 * 109.46509 * 57.99201 * 1 2 3 30 30 H 1.08996 * 109.46559 * 177.99180 * 1 2 3 31 31 H 0.96999 * 119.99623 * 180.27533 * 7 6 4 32 32 H 1.08995 * 109.47409 * 95.29217 * 13 12 2 33 33 H 1.08995 * 109.47079 * 215.29586 * 13 12 2 34 34 H 1.09002 * 109.46996 * 335.29369 * 13 12 2 35 35 H 0.96998 * 119.99765 * 359.97438 * 18 16 14 36 36 H 1.08005 * 125.89831 * 359.97438 * 20 19 18 37 37 H 1.09003 * 112.84716 * 325.30763 * 23 22 21 38 38 H 1.08991 * 113.61565 * 334.57022 * 24 23 22 39 39 H 1.09000 * 113.61301 * 105.47564 * 24 23 22 40 40 H 1.08999 * 113.53901 * 270.81144 * 25 24 23 41 41 H 1.09006 * 113.73891 * 139.94538 * 25 24 23 42 42 H 1.08995 * 113.61700 * 254.53253 * 26 23 22 43 43 H 1.09007 * 113.61360 * 25.43893 * 26 23 22 44 44 H 1.08003 * 126.17911 * 180.02562 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7103 1.2306 5 1 2.5917 -1.6290 1.1333 6 6 1.7777 -0.1874 2.4806 7 7 1.1308 0.9517 2.5976 8 14 2.3584 -1.0928 4.0078 9 1 1.2552 -1.9375 4.5320 10 1 3.5189 -1.9526 3.6623 11 1 2.7628 -0.1082 5.0433 12 7 2.0184 -0.6907 -1.1961 13 6 1.6645 -2.0933 -1.4279 14 6 2.7933 -0.0358 -2.0832 15 8 3.1709 1.0923 -1.8426 16 6 3.1873 -0.6981 -3.3623 17 8 2.7285 -1.7847 -3.6497 18 7 4.0523 -0.0895 -4.1978 19 6 4.4232 -0.7128 -5.4008 20 6 3.9792 -1.9640 -5.8553 21 7 4.5406 -2.2013 -7.0130 22 7 5.3677 -1.1171 -7.3328 23 6 6.1835 -0.9840 -8.5423 24 6 7.2336 0.1362 -8.4567 25 6 6.8881 0.4620 -9.9212 26 6 5.5085 -0.1623 -9.6532 27 6 5.2807 -0.2147 -6.3294 28 1 -0.3633 0.4824 0.9074 29 1 -0.3632 0.5447 -0.8715 30 1 -0.3632 -1.0270 -0.0360 31 1 0.9551 1.3215 3.4770 32 1 0.7910 -2.1450 -2.0777 33 1 2.5014 -2.6055 -1.9025 34 1 1.4378 -2.5729 -0.4756 35 1 4.4186 0.7789 -3.9683 36 1 3.2911 -2.6175 -5.3395 37 1 6.5874 -1.9358 -8.8873 38 1 6.9691 0.9303 -7.7586 39 1 8.2512 -0.2290 -8.3181 40 1 7.4860 -0.0938 -10.6435 41 1 6.8499 1.5300 -10.1359 42 1 5.1354 -0.7680 -10.4790 43 1 4.7714 0.5503 -9.2827 44 1 5.7989 0.7313 -6.2762 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001354246172.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:37:13 Heat of formation + Delta-G solvation = 49.969348 kcal Electronic energy + Delta-G solvation = -26577.384426 eV Core-core repulsion = 22726.353806 eV Total energy + Delta-G solvation = -3851.030619 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.66096 -40.21505 -38.87989 -37.88398 -35.82042 -34.50570 -32.72511 -31.55209 -29.64921 -29.36567 -26.35402 -26.22339 -25.67485 -25.24591 -24.22493 -21.99697 -21.61862 -20.32229 -19.79385 -18.85892 -17.97769 -17.11578 -16.42547 -16.39762 -16.13318 -15.66232 -15.42340 -15.04021 -14.89569 -14.49502 -14.26728 -13.69860 -13.41441 -13.30844 -13.13014 -12.78191 -12.64603 -12.50484 -12.33700 -11.89277 -11.67998 -11.61588 -11.26231 -11.15686 -11.07701 -10.89974 -10.79951 -10.78992 -10.75429 -10.58403 -10.32636 -10.19909 -9.49149 -9.22350 -8.79184 -8.47128 -7.84785 -7.67665 -6.11898 -4.19059 1.49071 1.98021 2.18388 2.85848 2.86835 3.26157 3.33497 3.37073 3.77484 3.80085 3.96472 4.11256 4.23523 4.27225 4.38431 4.54524 4.79572 4.86902 5.04412 5.11623 5.15456 5.21249 5.32192 5.33451 5.39293 5.49279 5.56686 5.78997 6.00782 6.11976 6.26105 6.56954 6.66453 6.73602 6.76221 6.86636 6.94668 7.15475 7.31496 7.40632 7.61204 7.64323 7.85561 8.04121 8.10101 8.36242 8.63661 8.86950 9.46804 10.94946 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.030532 B = 0.002380 C = 0.002352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 916.837901 B =11760.793871 C =11899.545749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.254 3.746 3 H 0.070 0.930 4 C -0.527 4.527 5 H 0.062 0.938 6 C 0.066 3.934 7 N -0.887 5.887 8 Si 0.900 3.100 9 H -0.280 1.280 10 H -0.273 1.273 11 H -0.285 1.285 12 N -0.553 5.553 13 C 0.082 3.918 14 C 0.496 3.504 15 O -0.536 6.536 16 C 0.509 3.491 17 O -0.510 6.510 18 N -0.621 5.621 19 C 0.004 3.996 20 C 0.053 3.947 21 N -0.289 5.289 22 N -0.360 5.360 23 C 0.142 3.858 24 C -0.146 4.146 25 C -0.138 4.138 26 C -0.149 4.149 27 C 0.019 3.981 28 H 0.087 0.913 29 H 0.015 0.985 30 H 0.034 0.966 31 H 0.264 0.736 32 H 0.050 0.950 33 H 0.075 0.925 34 H 0.076 0.924 35 H 0.421 0.579 36 H 0.208 0.792 37 H 0.122 0.878 38 H 0.094 0.906 39 H 0.083 0.917 40 H 0.088 0.912 41 H 0.080 0.920 42 H 0.079 0.921 43 H 0.089 0.911 44 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.794 -1.462 -22.307 24.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.154 3.846 3 H 0.088 0.912 4 C -0.566 4.566 5 H 0.081 0.919 6 C -0.137 4.137 7 N -0.524 5.524 8 Si 0.728 3.272 9 H -0.206 1.206 10 H -0.198 1.198 11 H -0.211 1.211 12 N -0.283 5.283 13 C -0.061 4.061 14 C 0.277 3.723 15 O -0.415 6.415 16 C 0.292 3.708 17 O -0.385 6.385 18 N -0.268 5.268 19 C -0.101 4.101 20 C -0.134 4.134 21 N -0.110 5.110 22 N -0.144 5.144 23 C 0.040 3.960 24 C -0.185 4.185 25 C -0.176 4.176 26 C -0.187 4.187 27 C -0.129 4.129 28 H 0.106 0.894 29 H 0.034 0.966 30 H 0.053 0.947 31 H 0.074 0.926 32 H 0.068 0.932 33 H 0.094 0.906 34 H 0.095 0.905 35 H 0.258 0.742 36 H 0.224 0.776 37 H 0.140 0.860 38 H 0.112 0.888 39 H 0.102 0.898 40 H 0.106 0.894 41 H 0.099 0.901 42 H 0.098 0.902 43 H 0.108 0.892 44 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges 9.715 -2.337 -23.217 25.276 hybrid contribution 0.349 0.548 1.694 1.815 sum 10.064 -1.789 -21.522 23.826 Atomic orbital electron populations 1.22049 0.97767 0.99484 1.00877 1.19167 0.91022 0.94855 0.79515 0.91240 1.21275 1.35675 1.09554 0.90100 0.91946 1.24896 0.94939 0.94860 0.99011 1.69919 1.40406 1.18038 1.24063 0.86452 0.79002 0.79428 0.82367 1.20581 1.19826 1.21077 1.48232 1.45702 1.12447 1.21934 1.21944 1.00908 0.81644 1.01636 1.19582 0.81774 0.86643 0.84347 1.90722 1.54784 1.18841 1.77200 1.20765 0.78996 0.85427 0.85594 1.90579 1.53044 1.20155 1.74685 1.42530 1.44298 1.22769 1.17159 1.17769 1.05059 0.96617 0.90617 1.24573 1.00472 0.95850 0.92475 1.77385 1.08818 1.08461 1.16323 1.48238 1.35647 1.14067 1.16408 1.22947 0.91009 0.99908 0.82121 1.23454 0.99100 0.97724 0.98211 1.22737 0.96656 1.02088 0.96076 1.23463 0.97629 0.99393 0.98260 1.21654 1.03072 0.97867 0.90310 0.89416 0.96597 0.94683 0.92600 0.93158 0.90643 0.90522 0.74232 0.77615 0.86041 0.88800 0.89826 0.89357 0.90139 0.90225 0.89209 0.80747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.36 9.07 37.16 0.34 -3.03 16 2 C 0.25 6.40 2.53 -69.08 -0.17 6.23 16 3 H 0.07 1.99 6.91 -51.93 -0.36 1.64 16 4 C -0.53 -14.10 7.98 -34.44 -0.27 -14.37 16 5 H 0.06 1.65 7.26 -52.49 -0.38 1.27 16 6 C 0.07 1.78 5.29 -17.82 -0.09 1.68 16 7 N -0.89 -24.79 11.74 55.43 0.65 -24.14 16 8 Si 0.90 20.87 29.54 -169.99 -5.02 15.85 16 9 H -0.28 -6.38 7.11 56.52 0.40 -5.97 16 10 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 11 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 12 N -0.55 -12.09 2.75 -175.82 -0.48 -12.57 16 13 C 0.08 1.53 8.12 59.84 0.49 2.02 16 14 C 0.50 10.31 7.72 -11.64 -0.09 10.22 16 15 O -0.54 -12.30 15.83 5.48 0.09 -12.22 16 16 C 0.51 8.83 7.67 -11.64 -0.09 8.74 16 17 O -0.51 -8.96 10.53 5.45 0.06 -8.90 16 18 N -0.62 -8.90 5.45 -10.48 -0.06 -8.96 16 19 C 0.00 0.06 6.90 -83.96 -0.58 -0.52 16 20 C 0.05 0.78 10.84 -17.19 -0.19 0.59 16 21 N -0.29 -4.03 12.56 30.72 0.39 -3.64 16 22 N -0.36 -3.93 3.81 -53.86 -0.21 -4.14 16 23 C 0.14 1.04 5.02 -67.12 -0.34 0.70 16 24 C -0.15 -0.72 7.46 -25.83 -0.19 -0.91 16 25 C -0.14 -0.55 8.09 -25.83 -0.21 -0.76 16 26 C -0.15 -0.90 7.88 -25.92 -0.20 -1.10 16 27 C 0.02 0.20 10.73 -16.91 -0.18 0.02 16 28 H 0.09 2.23 6.47 -51.93 -0.34 1.90 16 29 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.03 0.76 7.60 -51.93 -0.39 0.36 16 31 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 32 H 0.05 0.88 8.10 -51.93 -0.42 0.46 16 33 H 0.08 1.34 5.96 -51.93 -0.31 1.03 16 34 H 0.08 1.46 7.02 -51.93 -0.36 1.09 16 35 H 0.42 5.34 8.31 -40.82 -0.34 5.00 16 36 H 0.21 3.12 5.92 -52.48 -0.31 2.81 16 37 H 0.12 0.82 8.14 -51.93 -0.42 0.39 16 38 H 0.09 0.44 6.31 -51.93 -0.33 0.11 16 39 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 40 H 0.09 0.27 8.14 -51.93 -0.42 -0.16 16 41 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 42 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 43 H 0.09 0.63 8.14 -51.92 -0.42 0.21 16 44 H 0.18 1.24 6.70 -52.48 -0.35 0.89 16 LS Contribution 360.72 15.07 5.44 5.44 Total: -1.00 -31.54 360.72 -6.93 -38.47 By element: Atomic # 1 Polarization: 11.31 SS G_CDS: -5.99 Total: 5.32 kcal Atomic # 6 Polarization: 11.29 SS G_CDS: -1.79 Total: 9.50 kcal Atomic # 7 Polarization: -53.73 SS G_CDS: 0.29 Total: -53.44 kcal Atomic # 8 Polarization: -21.27 SS G_CDS: 0.14 Total: -21.12 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.85 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -31.54 -6.93 -38.47 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001354246172.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.439 kcal (2) G-P(sol) polarization free energy of solvation -31.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.469 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds