Wall clock time and date at job start Tue Mar 31 2020 12:37:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08997 * 109.47287 * 2 1 4 4 C 1.50700 * 109.46700 * 240.00327 * 2 1 3 5 5 H 1.08004 * 119.99838 * 239.99684 * 4 2 1 6 6 C 1.37877 * 120.00313 * 60.00053 * 4 2 1 7 7 N 1.31508 * 120.00071 * 359.97438 * 6 4 2 8 8 Si 1.86802 * 120.00015 * 179.97438 * 6 4 2 9 9 H 1.48495 * 109.47325 * 59.99864 * 8 6 4 10 10 H 1.48494 * 109.47038 * 179.97438 * 8 6 4 11 11 H 1.48499 * 109.46834 * 300.00047 * 8 6 4 12 12 N 1.46500 * 109.46994 * 120.00210 * 2 1 3 13 13 C 1.46493 * 119.99988 * 60.00323 * 12 2 1 14 14 C 1.34778 * 119.99867 * 239.99626 * 12 2 1 15 15 O 1.21369 * 119.99976 * 3.63369 * 14 12 2 16 16 C 1.49327 * 119.99949 * 183.63612 * 14 12 2 17 17 O 1.21398 * 120.00050 * 354.16225 * 16 14 12 18 18 N 1.34778 * 119.99771 * 174.44719 * 16 14 12 19 19 C 1.40482 * 119.99787 * 179.72370 * 18 16 14 20 20 C 1.40343 * 126.11380 * 359.68235 * 19 18 16 21 21 N 1.30823 * 108.20816 * 179.88068 * 20 19 18 22 22 N 1.40063 * 108.36588 * 0.37985 * 21 20 19 23 23 C 1.46494 * 125.99216 * 179.78952 * 22 21 20 24 24 C 1.53785 * 113.61323 * 194.09974 * 23 22 21 25 25 C 1.53953 * 87.01861 * 220.04806 * 24 23 22 26 26 C 1.53778 * 87.11290 * 25.36197 * 25 24 23 27 27 C 1.35226 * 108.00886 * 359.75889 * 22 21 20 28 28 H 1.08997 * 109.47462 * 59.99501 * 1 2 3 29 29 H 1.08997 * 109.47287 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.46913 * 300.00232 * 1 2 3 31 31 H 0.96994 * 120.00676 * 179.97438 * 7 6 4 32 32 H 1.09006 * 109.46828 * 263.98784 * 13 12 2 33 33 H 1.09001 * 109.47811 * 23.98398 * 13 12 2 34 34 H 1.09002 * 109.47520 * 143.99058 * 13 12 2 35 35 H 0.96994 * 120.00055 * 359.71604 * 18 16 14 36 36 H 1.07995 * 125.89355 * 0.02562 * 20 19 18 37 37 H 1.09004 * 112.85173 * 325.29017 * 23 22 21 38 38 H 1.09006 * 113.61253 * 334.56844 * 24 23 22 39 39 H 1.09001 * 113.61824 * 105.46813 * 24 23 22 40 40 H 1.08999 * 113.53625 * 270.80896 * 25 24 23 41 41 H 1.09004 * 113.74267 * 139.94328 * 25 24 23 42 42 H 1.09003 * 113.61200 * 220.09225 * 26 25 24 43 43 H 1.08994 * 113.61766 * 89.18775 * 26 25 24 44 44 H 1.08003 * 126.17878 * 180.02562 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0322 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1315 6 6 1.6991 -0.2393 -2.4828 7 7 0.9427 0.8297 -2.6034 8 14 2.3223 -1.1194 -4.0080 9 1 1.8279 -2.5197 -4.0083 10 1 1.8267 -0.4198 -5.2205 11 1 3.8073 -1.1189 -4.0078 12 7 2.0183 -0.6907 1.1962 13 6 1.6644 -2.0932 1.4279 14 6 2.7932 -0.0357 2.0833 15 8 3.0322 1.1438 1.9257 16 6 3.3578 -0.7612 3.2601 17 8 3.0344 -1.9111 3.4765 18 7 4.2219 -0.1374 4.0851 19 6 4.7485 -0.8181 5.1955 20 6 4.4599 -2.1398 5.5687 21 7 5.1409 -2.4171 6.6507 22 7 5.8794 -1.2826 7.0102 23 6 6.7727 -1.1673 8.1655 24 6 7.1712 0.2813 8.4939 25 6 8.5842 -0.2577 8.7819 26 6 8.2520 -1.4171 7.8278 27 6 5.6237 -0.3126 6.1033 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 0.7086 1.1614 -3.4843 32 1 0.7986 -2.1451 2.0880 33 1 1.4254 -2.5696 0.4771 34 1 2.5059 -2.6085 1.8911 35 1 4.4802 0.7813 3.9122 36 1 3.7926 -2.8127 5.0506 37 1 6.4211 -1.7301 9.0303 38 1 7.1261 0.9518 7.6357 39 1 6.6687 0.6837 9.3735 40 1 8.7283 -0.5708 9.8159 41 1 9.3831 0.3899 8.4205 42 1 8.6209 -2.3839 8.1705 43 1 8.5030 -1.2119 6.7872 44 1 6.0403 0.6838 6.1009 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001354246362.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:37:16 Heat of formation + Delta-G solvation = 53.788845 kcal Electronic energy + Delta-G solvation = -26593.592524 eV Core-core repulsion = 22742.727530 eV Total energy + Delta-G solvation = -3850.864994 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.66327 -40.23194 -38.87948 -37.88923 -35.83166 -34.51735 -32.74327 -31.55298 -29.61105 -29.34689 -26.35042 -26.21421 -25.66342 -25.25983 -24.21303 -22.00228 -21.61324 -20.32324 -19.79893 -18.89652 -17.97830 -17.10730 -16.43409 -16.33501 -16.12017 -15.71752 -15.39036 -15.05991 -14.91563 -14.49320 -14.30476 -13.69033 -13.42066 -13.33593 -13.15366 -12.79236 -12.65402 -12.48992 -12.32284 -11.86753 -11.68754 -11.60841 -11.26737 -11.14892 -11.10129 -10.87999 -10.79523 -10.76328 -10.74664 -10.49655 -10.29114 -10.19805 -9.49207 -9.23169 -8.75826 -8.45799 -7.84938 -7.66016 -6.11463 -4.19922 1.48775 1.97733 2.18356 2.84171 2.88086 3.27774 3.32387 3.35071 3.78403 3.79322 3.96617 4.11375 4.23852 4.27250 4.37985 4.54478 4.79454 4.86695 5.04365 5.11886 5.15497 5.20153 5.32390 5.33390 5.39791 5.49103 5.56723 5.79238 5.99193 6.17145 6.27040 6.62622 6.70263 6.76559 6.78213 6.88385 6.98671 7.17383 7.32134 7.41651 7.61450 7.65969 7.90562 8.06895 8.10446 8.37106 8.62592 8.86027 9.46200 10.93932 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.026766 B = 0.002420 C = 0.002400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1045.871237 B =11566.554612 C =11663.410367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.255 3.745 3 H 0.066 0.934 4 C -0.529 4.529 5 H 0.062 0.938 6 C 0.066 3.934 7 N -0.887 5.887 8 Si 0.901 3.099 9 H -0.276 1.276 10 H -0.286 1.286 11 H -0.276 1.276 12 N -0.551 5.551 13 C 0.068 3.932 14 C 0.496 3.504 15 O -0.540 6.540 16 C 0.510 3.490 17 O -0.509 6.509 18 N -0.620 5.620 19 C 0.004 3.996 20 C 0.053 3.947 21 N -0.289 5.289 22 N -0.360 5.360 23 C 0.142 3.858 24 C -0.146 4.146 25 C -0.138 4.138 26 C -0.149 4.149 27 C 0.019 3.981 28 H 0.096 0.904 29 H 0.033 0.967 30 H 0.013 0.987 31 H 0.265 0.735 32 H 0.047 0.953 33 H 0.076 0.924 34 H 0.091 0.909 35 H 0.421 0.579 36 H 0.208 0.792 37 H 0.122 0.878 38 H 0.094 0.906 39 H 0.083 0.917 40 H 0.088 0.912 41 H 0.080 0.920 42 H 0.079 0.921 43 H 0.089 0.911 44 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.713 -1.790 21.223 24.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.155 3.845 3 H 0.084 0.916 4 C -0.568 4.568 5 H 0.080 0.920 6 C -0.137 4.137 7 N -0.525 5.525 8 Si 0.729 3.271 9 H -0.201 1.201 10 H -0.211 1.211 11 H -0.202 1.202 12 N -0.281 5.281 13 C -0.074 4.074 14 C 0.277 3.723 15 O -0.419 6.419 16 C 0.294 3.706 17 O -0.384 6.384 18 N -0.267 5.267 19 C -0.101 4.101 20 C -0.134 4.134 21 N -0.110 5.110 22 N -0.144 5.144 23 C 0.040 3.960 24 C -0.185 4.185 25 C -0.176 4.176 26 C -0.188 4.188 27 C -0.129 4.129 28 H 0.114 0.886 29 H 0.052 0.948 30 H 0.032 0.968 31 H 0.075 0.925 32 H 0.065 0.935 33 H 0.095 0.905 34 H 0.109 0.891 35 H 0.258 0.742 36 H 0.224 0.776 37 H 0.140 0.860 38 H 0.112 0.888 39 H 0.102 0.898 40 H 0.106 0.894 41 H 0.099 0.901 42 H 0.098 0.902 43 H 0.108 0.892 44 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges 11.790 -2.752 22.032 25.139 hybrid contribution 0.193 0.621 -1.598 1.725 sum 11.982 -2.131 20.433 23.783 Atomic orbital electron populations 1.22086 0.97568 0.99810 1.01021 1.19161 0.91388 0.94563 0.79360 0.91605 1.21251 1.32250 1.13237 0.90013 0.92011 1.24883 0.94836 0.94964 0.98981 1.69860 1.36064 1.22502 1.24036 0.86503 0.79241 0.79624 0.81739 1.20118 1.21141 1.20193 1.48251 1.45281 1.12693 1.21844 1.22188 1.01481 0.81867 1.01905 1.19553 0.81842 0.87155 0.83797 1.90715 1.60582 1.15119 1.75479 1.20786 0.79147 0.86632 0.84072 1.90523 1.58829 1.17164 1.71934 1.42542 1.43750 1.16863 1.23544 1.17772 1.04229 0.94458 0.93632 1.24577 0.99603 0.95161 0.94017 1.77385 1.09931 1.07284 1.16370 1.48239 1.35863 1.08919 1.21343 1.22947 0.87628 0.98835 0.86576 1.23456 0.96957 0.95015 1.03055 1.22735 0.96726 0.97910 1.00186 1.23462 0.94265 0.99971 1.01056 1.21652 1.02158 0.96423 0.92645 0.88551 0.94819 0.96811 0.92512 0.93471 0.90535 0.89134 0.74234 0.77605 0.86043 0.88804 0.89837 0.89360 0.90135 0.90219 0.89193 0.80746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.49 8.97 37.16 0.33 -3.16 16 2 C 0.25 6.45 2.63 -69.08 -0.18 6.27 16 3 H 0.07 1.89 6.90 -51.93 -0.36 1.53 16 4 C -0.53 -14.15 7.95 -34.44 -0.27 -14.42 16 5 H 0.06 1.63 7.44 -52.48 -0.39 1.24 16 6 C 0.07 1.78 5.30 -17.82 -0.09 1.68 16 7 N -0.89 -24.64 11.32 55.43 0.63 -24.01 16 8 Si 0.90 20.85 29.54 -169.99 -5.02 15.83 16 9 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 10 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 11 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 12 N -0.55 -12.09 2.75 -175.82 -0.48 -12.57 16 13 C 0.07 1.29 8.49 59.84 0.51 1.80 16 14 C 0.50 10.31 7.73 -11.64 -0.09 10.22 16 15 O -0.54 -12.31 15.82 5.48 0.09 -12.22 16 16 C 0.51 8.85 7.74 -11.64 -0.09 8.76 16 17 O -0.51 -8.95 10.29 5.45 0.06 -8.89 16 18 N -0.62 -8.89 5.45 -10.48 -0.06 -8.95 16 19 C 0.00 0.05 6.90 -83.96 -0.58 -0.53 16 20 C 0.05 0.78 10.84 -17.19 -0.19 0.59 16 21 N -0.29 -4.02 12.56 30.72 0.39 -3.64 16 22 N -0.36 -3.93 3.81 -53.86 -0.21 -4.14 16 23 C 0.14 1.04 5.02 -67.12 -0.34 0.70 16 24 C -0.15 -0.71 7.46 -25.83 -0.19 -0.91 16 25 C -0.14 -0.56 8.09 -25.83 -0.21 -0.77 16 26 C -0.15 -0.91 7.88 -25.92 -0.20 -1.11 16 27 C 0.02 0.20 10.73 -16.91 -0.18 0.02 16 28 H 0.10 2.49 6.07 -51.93 -0.32 2.18 16 29 H 0.03 0.75 7.67 -51.93 -0.40 0.35 16 30 H 0.01 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 32 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.08 1.48 7.12 -51.93 -0.37 1.11 16 34 H 0.09 1.63 5.35 -51.94 -0.28 1.35 16 35 H 0.42 5.33 8.31 -40.82 -0.34 4.99 16 36 H 0.21 3.12 5.92 -52.49 -0.31 2.80 16 37 H 0.12 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.09 0.44 6.32 -51.93 -0.33 0.11 16 39 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 40 H 0.09 0.27 8.14 -51.93 -0.42 -0.16 16 41 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 42 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 43 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 44 H 0.18 1.24 6.70 -52.48 -0.35 0.89 16 LS Contribution 359.83 15.07 5.42 5.42 Total: -1.00 -31.32 359.83 -6.92 -38.25 By element: Atomic # 1 Polarization: 11.72 SS G_CDS: -5.96 Total: 5.77 kcal Atomic # 6 Polarization: 10.93 SS G_CDS: -1.78 Total: 9.15 kcal Atomic # 7 Polarization: -53.57 SS G_CDS: 0.27 Total: -53.31 kcal Atomic # 8 Polarization: -21.25 SS G_CDS: 0.14 Total: -21.11 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.83 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -31.32 -6.92 -38.25 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001354246362.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.036 kcal (2) G-P(sol) polarization free energy of solvation -31.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.247 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds