Wall clock time and date at job start Tue Mar 31 2020 12:39:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42891 * 114.00122 * 2 1 4 4 C 1.53005 * 109.47271 * 210.00126 * 3 2 1 5 5 C 1.52997 * 109.47380 * 179.97438 * 4 3 2 6 6 C 1.53005 * 109.47185 * 59.99656 * 5 4 3 7 7 N 1.46501 * 109.47172 * 59.99880 * 6 5 4 8 8 S 1.65598 * 120.00034 * 144.99882 * 7 6 5 9 9 O 1.42100 * 106.40183 * 311.46236 * 8 7 6 10 10 O 1.42101 * 106.40217 * 178.54484 * 8 7 6 11 11 N 1.65597 * 107.21541 * 65.00515 * 8 7 6 12 12 C 1.46503 * 119.99956 * 269.99520 * 11 8 7 13 13 C 1.46497 * 120.00227 * 89.99985 * 11 8 7 14 14 H 1.09003 * 109.46733 * 0.02562 * 13 11 8 15 15 C 1.53000 * 109.47145 * 119.99787 * 13 11 8 16 16 C 1.50694 * 109.47115 * 239.99861 * 13 11 8 17 17 H 1.08000 * 120.00563 * 359.97438 * 16 13 11 18 18 C 1.37885 * 119.99902 * 180.02562 * 16 13 11 19 19 N 1.31516 * 119.99913 * 359.97438 * 18 16 13 20 20 Si 1.86798 * 119.99766 * 179.97438 * 18 16 13 21 21 H 1.48506 * 109.46985 * 179.97438 * 20 18 16 22 22 H 1.48494 * 109.47276 * 299.99832 * 20 18 16 23 23 H 1.48498 * 109.47150 * 60.00043 * 20 18 16 24 24 C 1.53011 * 109.47016 * 300.00247 * 6 5 4 25 25 C 1.52997 * 109.47295 * 89.99800 * 3 2 1 26 26 H 1.09004 * 109.47174 * 60.00669 * 1 2 3 27 27 H 1.09009 * 109.46773 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47253 * 299.99952 * 1 2 3 29 29 H 1.09005 * 109.46837 * 329.99858 * 3 2 1 30 30 H 1.08999 * 109.46878 * 59.99475 * 4 3 2 31 31 H 1.08996 * 109.46769 * 299.99814 * 4 3 2 32 32 H 1.09005 * 109.47014 * 299.99906 * 5 4 3 33 33 H 1.08991 * 109.47342 * 179.97438 * 5 4 3 34 34 H 1.08997 * 109.47049 * 180.02562 * 6 5 4 35 35 H 0.96998 * 119.99681 * 325.00465 * 7 6 5 36 36 H 1.08994 * 109.47665 * 270.00896 * 12 11 8 37 37 H 1.09008 * 109.46786 * 30.00504 * 12 11 8 38 38 H 1.08997 * 109.47360 * 149.99945 * 12 11 8 39 39 H 1.09000 * 109.47156 * 59.99824 * 15 13 11 40 40 H 1.08997 * 109.47359 * 180.02562 * 15 13 11 41 41 H 1.09007 * 109.47356 * 300.00099 * 15 13 11 42 42 H 0.97001 * 119.99646 * 179.97438 * 19 18 16 43 43 H 1.08999 * 109.46652 * 179.97438 * 24 6 5 44 44 H 1.08996 * 109.47030 * 299.99616 * 24 6 5 45 45 H 1.09001 * 109.47082 * 299.99596 * 25 3 2 46 46 H 1.08994 * 109.47595 * 60.00108 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.3589 1.2632 -0.7213 5 6 3.9810 2.6610 -0.7219 6 6 4.1883 3.1276 0.7205 7 7 5.0826 2.1954 1.4115 8 16 6.1522 2.7590 2.5431 9 8 6.8141 3.8688 1.9519 10 8 6.8399 1.6220 3.0467 11 7 5.2613 3.3621 3.8020 12 6 4.8542 4.7695 3.8032 13 6 4.8804 2.4885 4.9145 14 1 5.2704 1.4859 4.7391 15 6 5.4610 3.0402 6.2182 16 6 3.3780 2.4327 5.0177 17 1 2.7678 2.9924 4.3243 18 6 2.7822 1.6679 5.9982 19 7 3.5252 0.9867 6.8430 20 14 0.9199 1.5994 6.1266 21 1 0.5337 0.7136 7.2543 22 1 0.3896 2.9656 6.3656 23 1 0.3560 1.0637 4.8616 24 6 2.8395 3.1698 1.4417 25 6 2.2176 1.7713 1.4425 26 1 -0.3634 0.5137 -0.8901 27 1 -0.3633 -1.0278 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.3449 1.9993 -0.5139 30 1 3.2111 0.9312 -1.7489 31 1 4.0241 0.5693 -0.2074 32 1 3.3156 3.3546 -1.2360 33 1 4.9419 2.6308 -1.2353 34 1 4.6311 4.1236 0.7200 35 1 5.0482 1.2480 1.2061 36 1 5.6194 5.3687 4.2965 37 1 4.7301 5.1126 2.7760 38 1 3.9100 4.8741 4.3377 39 1 5.0714 4.0429 6.3937 40 1 5.1779 2.3899 7.0459 41 1 6.5477 3.0806 6.1435 42 1 3.1060 0.4490 7.5330 43 1 2.9874 3.5017 2.4694 44 1 2.1742 3.8634 0.9277 45 1 1.2568 1.8015 1.9562 46 1 2.8829 1.0775 1.9564 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001363933488.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:39:09 Heat of formation + Delta-G solvation = -134.433613 kcal Electronic energy + Delta-G solvation = -28085.047193 eV Core-core repulsion = 24329.171461 eV Total energy + Delta-G solvation = -3755.875732 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.160 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -39.44536 -37.04467 -36.57481 -36.11362 -35.21337 -32.61110 -32.54601 -30.71602 -29.08220 -28.68147 -26.30378 -25.48451 -25.18740 -22.57133 -22.09899 -20.76573 -19.88071 -18.53677 -17.30629 -16.77315 -16.60599 -16.37606 -15.97625 -15.25686 -15.11077 -14.77964 -14.43870 -14.16967 -13.96980 -13.46726 -13.35746 -12.95066 -12.77366 -12.44842 -12.28758 -12.02572 -11.96271 -11.80634 -11.55311 -11.48076 -11.34605 -11.25232 -11.20804 -11.11558 -10.96828 -10.90028 -10.73717 -10.46503 -10.39898 -10.27439 -10.19467 -10.00565 -9.47048 -9.22915 -9.02942 -8.47389 -7.94037 -6.08816 -4.16652 1.30663 3.23555 3.29537 3.30369 3.53191 3.77840 4.19201 4.34704 4.75649 4.77918 4.96052 5.03663 5.16567 5.22202 5.25661 5.32034 5.34311 5.44296 5.50169 5.54718 5.57797 5.65908 5.67333 5.88735 5.92920 6.07735 6.10473 6.16528 6.26736 6.38121 6.41290 6.55006 6.66123 6.71507 6.88945 6.89611 7.13723 7.27916 7.31587 7.56050 7.64689 7.80001 8.06313 8.26755 8.85665 9.49160 10.96327 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.009842 B = 0.007694 C = 0.004896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2844.154390 B = 3638.109346 C = 5717.853262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.386 6.386 3 C 0.088 3.912 4 C -0.115 4.115 5 C -0.118 4.118 6 C 0.154 3.846 7 N -1.121 6.121 8 S 2.782 3.218 9 O -1.001 7.001 10 O -0.983 6.983 11 N -0.989 5.989 12 C 0.105 3.895 13 C 0.270 3.730 14 H 0.058 0.942 15 C -0.144 4.144 16 C -0.521 4.521 17 H 0.065 0.935 18 C 0.066 3.934 19 N -0.886 5.886 20 Si 0.892 3.108 21 H -0.288 1.288 22 H -0.278 1.278 23 H -0.277 1.277 24 C -0.142 4.142 25 C -0.133 4.133 26 H 0.036 0.964 27 H 0.082 0.918 28 H 0.042 0.958 29 H 0.055 0.945 30 H 0.067 0.933 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.074 0.926 34 H 0.088 0.912 35 H 0.412 0.588 36 H 0.042 0.958 37 H 0.048 0.952 38 H 0.079 0.921 39 H 0.031 0.969 40 H 0.092 0.908 41 H 0.011 0.989 42 H 0.263 0.737 43 H 0.094 0.906 44 H 0.064 0.936 45 H 0.061 0.939 46 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.242 3.736 -13.379 14.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.305 6.305 3 C 0.030 3.970 4 C -0.153 4.153 5 C -0.157 4.157 6 C 0.046 3.954 7 N -0.880 5.880 8 S 2.791 3.209 9 O -0.985 6.985 10 O -0.967 6.967 11 N -0.832 5.832 12 C -0.041 4.041 13 C 0.167 3.833 14 H 0.076 0.924 15 C -0.204 4.204 16 C -0.561 4.561 17 H 0.083 0.917 18 C -0.137 4.137 19 N -0.524 5.524 20 Si 0.720 3.280 21 H -0.214 1.214 22 H -0.204 1.204 23 H -0.202 1.202 24 C -0.181 4.181 25 C -0.171 4.171 26 H 0.055 0.945 27 H 0.100 0.900 28 H 0.060 0.940 29 H 0.073 0.927 30 H 0.085 0.915 31 H 0.091 0.909 32 H 0.092 0.908 33 H 0.093 0.907 34 H 0.106 0.894 35 H 0.246 0.754 36 H 0.061 0.939 37 H 0.067 0.933 38 H 0.098 0.902 39 H 0.051 0.949 40 H 0.110 0.890 41 H 0.030 0.970 42 H 0.073 0.927 43 H 0.112 0.888 44 H 0.082 0.918 45 H 0.080 0.920 46 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -3.164 3.622 -13.247 14.093 hybrid contribution -1.875 -0.283 0.210 1.908 sum -5.039 3.340 -13.037 14.370 Atomic orbital electron populations 1.22737 0.81547 1.02412 0.99713 1.87900 1.19253 1.28230 1.95102 1.22243 0.94320 0.84018 0.96370 1.21548 0.95669 0.97610 1.00477 1.21744 1.01395 0.96476 0.96048 1.20720 0.90403 0.92550 0.91744 1.56132 1.56232 1.17805 1.57821 1.01791 0.73583 0.72959 0.72616 1.93534 1.72753 1.54302 1.77867 1.93592 1.71802 1.51925 1.79418 1.57693 1.71962 1.17470 1.36086 1.21213 1.01275 0.81339 1.00313 1.18696 0.94950 0.88402 0.81258 0.92418 1.22054 0.95924 1.00588 1.01853 1.21336 0.90851 1.28857 1.15036 0.91691 1.24893 0.97924 0.95312 0.95547 1.69868 1.34939 1.29684 1.17946 0.86670 0.85825 0.77860 0.77671 1.21383 1.20387 1.20224 1.22171 0.95712 0.97101 1.03099 1.21888 1.01902 0.97574 0.95705 0.94493 0.89976 0.93980 0.92662 0.91476 0.90870 0.90808 0.90713 0.89387 0.75377 0.93932 0.93305 0.90203 0.94941 0.88999 0.96998 0.92654 0.88764 0.91775 0.91997 0.89779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 10.82 101.05 1.09 1.46 16 2 O -0.39 -5.43 10.35 -35.23 -0.36 -5.80 16 3 C 0.09 1.11 2.61 -26.73 -0.07 1.04 16 4 C -0.12 -1.31 5.39 -26.73 -0.14 -1.45 16 5 C -0.12 -1.23 5.63 -26.73 -0.15 -1.38 16 6 C 0.15 1.99 3.14 -67.92 -0.21 1.78 16 7 N -1.12 -17.27 4.80 -4.88 -0.02 -17.29 16 8 S 2.78 53.35 6.08 -107.50 -0.65 52.69 16 9 O -1.00 -20.10 16.55 -57.17 -0.95 -21.04 16 10 O -0.98 -22.39 16.70 -57.17 -0.95 -23.34 16 11 N -0.99 -19.57 2.79 -115.85 -0.32 -19.89 16 12 C 0.11 1.77 8.15 59.85 0.49 2.26 16 13 C 0.27 6.35 2.62 -69.09 -0.18 6.17 16 14 H 0.06 1.54 6.91 -51.93 -0.36 1.18 16 15 C -0.14 -3.39 8.97 37.16 0.33 -3.05 16 16 C -0.52 -12.63 7.99 -34.44 -0.28 -12.91 16 17 H 0.07 1.49 5.58 -52.49 -0.29 1.20 16 18 C 0.07 1.69 5.30 -17.82 -0.09 1.59 16 19 N -0.89 -23.99 11.32 55.43 0.63 -23.36 16 20 Si 0.89 19.97 29.54 -169.99 -5.02 14.95 16 21 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 22 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 23 H -0.28 -6.12 7.11 56.52 0.40 -5.71 16 24 C -0.14 -1.91 5.64 -26.70 -0.15 -2.06 16 25 C -0.13 -1.96 5.38 -26.71 -0.14 -2.11 16 26 H 0.04 0.34 8.09 -51.93 -0.42 -0.08 16 27 H 0.08 0.80 8.14 -51.92 -0.42 0.38 16 28 H 0.04 0.48 7.87 -51.93 -0.41 0.07 16 29 H 0.06 0.61 7.79 -51.93 -0.40 0.21 16 30 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.07 0.90 6.51 -51.93 -0.34 0.56 16 32 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.09 1.11 7.06 -51.93 -0.37 0.75 16 35 H 0.41 6.01 6.82 -34.47 -0.23 5.77 16 36 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.05 0.70 7.35 -51.92 -0.38 0.32 16 38 H 0.08 1.36 7.02 -51.93 -0.36 0.99 16 39 H 0.03 0.71 7.67 -51.93 -0.40 0.31 16 40 H 0.09 2.36 6.07 -51.93 -0.32 2.04 16 41 H 0.01 0.25 8.14 -51.93 -0.42 -0.17 16 42 H 0.26 6.88 8.31 -40.82 -0.34 6.54 16 43 H 0.09 1.47 4.85 -51.93 -0.25 1.22 16 44 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 45 H 0.06 0.97 7.87 -51.93 -0.41 0.56 16 46 H 0.08 1.45 7.45 -51.93 -0.39 1.07 16 LS Contribution 361.28 15.07 5.44 5.44 Total: -1.00 -30.52 361.28 -9.15 -39.67 By element: Atomic # 1 Polarization: 14.05 SS G_CDS: -7.43 Total: 6.62 kcal Atomic # 6 Polarization: -9.15 SS G_CDS: 0.49 Total: -8.66 kcal Atomic # 7 Polarization: -60.83 SS G_CDS: 0.28 Total: -60.54 kcal Atomic # 8 Polarization: -47.92 SS G_CDS: -2.27 Total: -50.18 kcal Atomic # 14 Polarization: 19.97 SS G_CDS: -5.02 Total: 14.95 kcal Atomic # 16 Polarization: 53.35 SS G_CDS: -0.65 Total: 52.69 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -30.52 -9.15 -39.67 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001363933488.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.760 kcal (2) G-P(sol) polarization free energy of solvation -30.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.674 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.434 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds