Wall clock time and date at job start Tue Mar 31 2020 12:39:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42891 * 114.00122 * 2 1 4 4 C 1.53005 * 109.47271 * 210.00126 * 3 2 1 5 5 C 1.52997 * 109.47380 * 179.97438 * 4 3 2 6 6 C 1.53005 * 109.47185 * 59.99656 * 5 4 3 7 7 N 1.46501 * 109.47172 * 59.99880 * 6 5 4 8 8 S 1.65598 * 120.00034 * 144.99882 * 7 6 5 9 9 O 1.42100 * 106.40183 * 311.46236 * 8 7 6 10 10 O 1.42101 * 106.40217 * 178.54484 * 8 7 6 11 11 N 1.65597 * 107.21541 * 65.00515 * 8 7 6 12 12 C 1.46503 * 119.99956 * 269.99520 * 11 8 7 13 13 C 1.46497 * 120.00227 * 89.99985 * 11 8 7 14 14 H 1.09003 * 109.46733 * 0.02562 * 13 11 8 15 15 C 1.53000 * 109.47145 * 119.99787 * 13 11 8 16 16 C 1.50694 * 109.47115 * 239.99861 * 13 11 8 17 17 H 1.08000 * 120.00563 * 359.97438 * 16 13 11 18 18 C 1.37885 * 119.99902 * 180.02562 * 16 13 11 19 19 N 1.31516 * 119.99913 * 359.97438 * 18 16 13 20 20 Si 1.86798 * 119.99766 * 179.97438 * 18 16 13 21 21 H 1.48506 * 109.46985 * 179.97438 * 20 18 16 22 22 H 1.48494 * 109.47276 * 299.99832 * 20 18 16 23 23 H 1.48498 * 109.47150 * 60.00043 * 20 18 16 24 24 C 1.53011 * 109.47016 * 300.00247 * 6 5 4 25 25 C 1.52997 * 109.47295 * 89.99800 * 3 2 1 26 26 H 1.09004 * 109.47174 * 60.00669 * 1 2 3 27 27 H 1.09009 * 109.46773 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47253 * 299.99952 * 1 2 3 29 29 H 1.09005 * 109.46837 * 329.99858 * 3 2 1 30 30 H 1.08999 * 109.46878 * 59.99475 * 4 3 2 31 31 H 1.08996 * 109.46769 * 299.99814 * 4 3 2 32 32 H 1.09005 * 109.47014 * 299.99906 * 5 4 3 33 33 H 1.08991 * 109.47342 * 179.97438 * 5 4 3 34 34 H 1.08997 * 109.47049 * 180.02562 * 6 5 4 35 35 H 0.96998 * 119.99681 * 325.00465 * 7 6 5 36 36 H 1.08994 * 109.47665 * 270.00896 * 12 11 8 37 37 H 1.09008 * 109.46786 * 30.00504 * 12 11 8 38 38 H 1.08997 * 109.47360 * 149.99945 * 12 11 8 39 39 H 1.09000 * 109.47156 * 59.99824 * 15 13 11 40 40 H 1.08997 * 109.47359 * 180.02562 * 15 13 11 41 41 H 1.09007 * 109.47356 * 300.00099 * 15 13 11 42 42 H 0.97001 * 119.99646 * 179.97438 * 19 18 16 43 43 H 1.08999 * 109.46652 * 179.97438 * 24 6 5 44 44 H 1.08996 * 109.47030 * 299.99616 * 24 6 5 45 45 H 1.09001 * 109.47082 * 299.99596 * 25 3 2 46 46 H 1.08994 * 109.47595 * 60.00108 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.3589 1.2632 -0.7213 5 6 3.9810 2.6610 -0.7219 6 6 4.1883 3.1276 0.7205 7 7 5.0826 2.1954 1.4115 8 16 6.1522 2.7590 2.5431 9 8 6.8141 3.8688 1.9519 10 8 6.8399 1.6220 3.0467 11 7 5.2613 3.3621 3.8020 12 6 4.8542 4.7695 3.8032 13 6 4.8804 2.4885 4.9145 14 1 5.2704 1.4859 4.7391 15 6 5.4610 3.0402 6.2182 16 6 3.3780 2.4327 5.0177 17 1 2.7678 2.9924 4.3243 18 6 2.7822 1.6679 5.9982 19 7 3.5252 0.9867 6.8430 20 14 0.9199 1.5994 6.1266 21 1 0.5337 0.7136 7.2543 22 1 0.3896 2.9656 6.3656 23 1 0.3560 1.0637 4.8616 24 6 2.8395 3.1698 1.4417 25 6 2.2176 1.7713 1.4425 26 1 -0.3634 0.5137 -0.8901 27 1 -0.3633 -1.0278 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.3449 1.9993 -0.5139 30 1 3.2111 0.9312 -1.7489 31 1 4.0241 0.5693 -0.2074 32 1 3.3156 3.3546 -1.2360 33 1 4.9419 2.6308 -1.2353 34 1 4.6311 4.1236 0.7200 35 1 5.0482 1.2480 1.2061 36 1 5.6194 5.3687 4.2965 37 1 4.7301 5.1126 2.7760 38 1 3.9100 4.8741 4.3377 39 1 5.0714 4.0429 6.3937 40 1 5.1779 2.3899 7.0459 41 1 6.5477 3.0806 6.1435 42 1 3.1060 0.4490 7.5330 43 1 2.9874 3.5017 2.4694 44 1 2.1742 3.8634 0.9277 45 1 1.2568 1.8015 1.9562 46 1 2.8829 1.0775 1.9564 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001363933488.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:39:08 Heat of formation + Delta-G solvation = -156.310302 kcal Electronic energy + Delta-G solvation = -28085.995838 eV Core-core repulsion = 24329.171461 eV Total energy + Delta-G solvation = -3756.824376 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.160 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.45438 -38.33810 -38.04010 -37.72479 -36.86083 -34.45756 -33.71226 -31.71559 -30.87598 -29.72087 -27.24928 -27.18712 -26.92599 -23.54694 -23.11326 -22.56577 -21.06452 -19.88387 -18.81395 -18.35879 -18.19388 -17.58626 -17.20966 -16.92198 -16.22177 -16.05438 -15.72743 -15.33990 -15.08152 -14.96446 -14.83067 -14.52675 -13.97725 -13.68302 -13.59550 -13.42823 -13.30673 -13.19343 -13.11166 -13.00019 -12.95387 -12.69811 -12.67656 -12.50268 -12.42637 -12.22507 -12.11486 -12.06591 -11.84764 -11.78583 -11.31347 -11.28206 -11.09737 -10.51971 -10.44696 -10.16271 -9.59180 -8.04763 -6.17151 -0.22263 1.45153 1.45988 1.52038 2.06791 2.47251 2.68912 2.87677 3.24747 3.49135 3.79450 3.84085 4.02095 4.13300 4.20452 4.28750 4.39145 4.50031 4.51318 4.55083 4.60206 4.63359 4.75258 4.81980 4.83507 4.90221 4.99405 5.01739 5.03544 5.16987 5.18536 5.20515 5.30594 5.31265 5.35990 5.47508 5.58104 5.67161 5.75870 5.90721 6.10552 6.23239 6.34427 6.37267 6.92585 7.51549 9.00026 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.009842 B = 0.007694 C = 0.004896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2844.154390 B = 3638.109346 C = 5717.853262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.412 6.412 3 C 0.090 3.910 4 C -0.115 4.115 5 C -0.109 4.109 6 C 0.145 3.855 7 N -1.112 6.112 8 S 2.796 3.204 9 O -1.007 7.007 10 O -1.025 7.025 11 N -0.993 5.993 12 C 0.099 3.901 13 C 0.277 3.723 14 H 0.020 0.980 15 C -0.138 4.138 16 C -0.513 4.513 17 H 0.079 0.921 18 C 0.016 3.984 19 N -0.921 5.921 20 Si 0.949 3.051 21 H -0.296 1.296 22 H -0.267 1.267 23 H -0.272 1.272 24 C -0.139 4.139 25 C -0.132 4.132 26 H 0.060 0.940 27 H 0.090 0.910 28 H 0.034 0.966 29 H 0.080 0.920 30 H 0.084 0.916 31 H 0.055 0.945 32 H 0.105 0.895 33 H 0.083 0.917 34 H 0.098 0.902 35 H 0.415 0.585 36 H 0.048 0.952 37 H 0.077 0.923 38 H 0.078 0.922 39 H 0.045 0.955 40 H 0.067 0.933 41 H 0.015 0.985 42 H 0.260 0.740 43 H 0.071 0.929 44 H 0.097 0.903 45 H 0.047 0.953 46 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.808 5.519 -15.884 17.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.332 6.332 3 C 0.033 3.967 4 C -0.153 4.153 5 C -0.148 4.148 6 C 0.039 3.961 7 N -0.874 5.874 8 S 2.805 3.195 9 O -0.990 6.990 10 O -1.010 7.010 11 N -0.835 5.835 12 C -0.047 4.047 13 C 0.172 3.828 14 H 0.037 0.963 15 C -0.198 4.198 16 C -0.553 4.553 17 H 0.097 0.903 18 C -0.183 4.183 19 N -0.561 5.561 20 Si 0.775 3.225 21 H -0.222 1.222 22 H -0.192 1.192 23 H -0.198 1.198 24 C -0.178 4.178 25 C -0.170 4.170 26 H 0.078 0.922 27 H 0.109 0.891 28 H 0.053 0.947 29 H 0.098 0.902 30 H 0.102 0.898 31 H 0.074 0.926 32 H 0.123 0.877 33 H 0.102 0.898 34 H 0.116 0.884 35 H 0.251 0.749 36 H 0.067 0.933 37 H 0.096 0.904 38 H 0.097 0.903 39 H 0.064 0.936 40 H 0.086 0.914 41 H 0.034 0.966 42 H 0.069 0.931 43 H 0.090 0.910 44 H 0.115 0.885 45 H 0.066 0.934 46 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -4.734 5.438 -15.766 17.336 hybrid contribution -1.390 -0.833 0.930 1.868 sum -6.124 4.605 -14.836 16.698 Atomic orbital electron populations 1.22900 0.80257 1.03357 1.00436 1.87875 1.20868 1.29278 1.95147 1.22296 0.95461 0.84016 0.94972 1.21568 0.94674 0.98010 1.01008 1.21746 1.02577 0.96333 0.94171 1.21050 0.89503 0.92484 0.93100 1.55869 1.56167 1.18535 1.56865 1.01178 0.73601 0.72085 0.72619 1.93520 1.73237 1.54441 1.77825 1.93532 1.73470 1.53535 1.80441 1.57538 1.72023 1.18408 1.35547 1.21427 1.01340 0.79594 1.02328 1.18326 0.94617 0.87431 0.82392 0.96261 1.21941 0.96194 1.00616 1.01061 1.21614 0.91334 1.27895 1.14414 0.90334 1.25619 1.01652 0.95396 0.95623 1.70021 1.36415 1.30871 1.18787 0.85757 0.81396 0.78050 0.77286 1.22199 1.19212 1.19779 1.22150 0.96559 0.96760 1.02332 1.21845 1.00288 0.97802 0.97053 0.92157 0.89123 0.94744 0.90169 0.89753 0.92643 0.87700 0.89819 0.88366 0.74908 0.93330 0.90433 0.90285 0.93639 0.91424 0.96607 0.93101 0.91028 0.88472 0.93428 0.93379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.54 10.82 113.37 1.23 1.77 16 2 O -0.41 -11.01 10.35 -148.98 -1.54 -12.55 16 3 C 0.09 2.05 2.61 30.59 0.08 2.13 16 4 C -0.11 -2.30 5.39 30.59 0.16 -2.14 16 5 C -0.11 -1.87 5.63 30.60 0.17 -1.70 16 6 C 0.15 3.37 3.14 45.00 0.14 3.51 16 7 N -1.11 -33.38 4.80 -169.37 -0.81 -34.19 16 8 S 2.80 106.70 6.08 -56.49 -0.34 106.36 16 9 O -1.01 -38.98 16.55 -128.00 -2.12 -41.10 16 10 O -1.03 -48.08 16.70 -128.00 -2.14 -50.22 16 11 N -0.99 -39.00 2.79 -520.45 -1.45 -40.45 16 12 C 0.10 3.15 8.15 127.77 1.04 4.19 16 13 C 0.28 13.30 2.62 44.24 0.12 13.42 16 14 H 0.02 1.09 6.91 -2.39 -0.02 1.07 16 15 C -0.14 -6.61 8.97 71.98 0.65 -5.96 16 16 C -0.51 -25.00 7.99 25.60 0.20 -24.79 16 17 H 0.08 3.55 5.58 -2.91 -0.02 3.53 16 18 C 0.02 0.84 5.30 84.66 0.45 1.29 16 19 N -0.92 -51.36 11.32 21.45 0.24 -51.12 16 20 Si 0.95 41.15 29.54 68.60 2.03 43.17 16 21 H -0.30 -13.13 7.11 99.48 0.71 -12.43 16 22 H -0.27 -11.04 7.11 99.48 0.71 -10.34 16 23 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 24 C -0.14 -3.39 5.64 30.61 0.17 -3.22 16 25 C -0.13 -3.74 5.38 30.61 0.16 -3.58 16 26 H 0.06 0.93 8.09 -2.39 -0.02 0.91 16 27 H 0.09 1.63 8.14 -2.38 -0.02 1.61 16 28 H 0.03 0.74 7.87 -2.39 -0.02 0.72 16 29 H 0.08 1.44 7.79 -2.38 -0.02 1.42 16 30 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 31 H 0.05 1.30 6.51 -2.39 -0.02 1.29 16 32 H 0.10 1.23 8.14 -2.38 -0.02 1.21 16 33 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 34 H 0.10 2.13 7.06 -2.39 -0.02 2.11 16 35 H 0.42 12.16 6.82 -96.75 -0.66 11.50 16 36 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 37 H 0.08 2.01 7.35 -2.38 -0.02 1.99 16 38 H 0.08 2.54 7.02 -2.39 -0.02 2.52 16 39 H 0.04 1.99 7.67 -2.39 -0.02 1.97 16 40 H 0.07 3.58 6.07 -2.39 -0.01 3.56 16 41 H 0.01 0.69 8.14 -2.38 -0.02 0.67 16 42 H 0.26 14.02 8.31 -92.71 -0.77 13.25 16 43 H 0.07 2.09 4.85 -2.39 -0.01 2.08 16 44 H 0.10 1.74 8.14 -2.39 -0.02 1.72 16 45 H 0.05 1.45 7.87 -2.39 -0.02 1.43 16 46 H 0.05 1.69 7.45 -2.39 -0.02 1.67 16 Total: -1.00 -67.07 361.28 -1.24 -68.32 By element: Atomic # 1 Polarization: 26.55 SS G_CDS: 0.32 Total: 26.87 kcal Atomic # 6 Polarization: -19.67 SS G_CDS: 4.58 Total: -15.09 kcal Atomic # 7 Polarization: -123.74 SS G_CDS: -2.02 Total: -125.76 kcal Atomic # 8 Polarization: -98.07 SS G_CDS: -5.80 Total: -103.86 kcal Atomic # 14 Polarization: 41.15 SS G_CDS: 2.03 Total: 43.17 kcal Atomic # 16 Polarization: 106.70 SS G_CDS: -0.34 Total: 106.36 kcal Total: -67.07 -1.24 -68.32 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001363933488.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.995 kcal (2) G-P(sol) polarization free energy of solvation -67.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.315 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds