Wall clock time and date at job start Tue Mar 31 2020 12:39:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42898 * 114.00286 * 2 1 4 4 C 1.53000 * 109.47404 * 210.00096 * 3 2 1 5 5 C 1.52995 * 109.47229 * 180.02562 * 4 3 2 6 6 C 1.52996 * 109.47508 * 59.99799 * 5 4 3 7 7 N 1.46507 * 109.46977 * 59.99930 * 6 5 4 8 8 S 1.65602 * 119.99846 * 145.00049 * 7 6 5 9 9 O 1.42100 * 106.40309 * 311.46248 * 8 7 6 10 10 O 1.42095 * 106.39801 * 178.53924 * 8 7 6 11 11 N 1.65601 * 107.21654 * 65.00114 * 8 7 6 12 12 C 1.46494 * 120.00088 * 269.99950 * 11 8 7 13 13 C 1.46500 * 120.00266 * 89.99921 * 11 8 7 14 14 H 1.09012 * 109.46614 * 359.97438 * 13 11 8 15 15 C 1.52998 * 109.47395 * 240.00162 * 13 11 8 16 16 C 1.50697 * 109.47458 * 119.99735 * 13 11 8 17 17 H 1.08005 * 119.99672 * 5.61251 * 16 13 11 18 18 C 1.37876 * 120.00374 * 185.61711 * 16 13 11 19 19 N 1.31507 * 120.00049 * 197.28031 * 18 16 13 20 20 Si 1.86803 * 119.99720 * 17.55197 * 18 16 13 21 21 H 1.48509 * 109.47031 * 179.72516 * 20 18 16 22 22 H 1.48497 * 109.47404 * 299.72568 * 20 18 16 23 23 H 1.48500 * 109.47057 * 59.73333 * 20 18 16 24 24 C 1.53000 * 109.47040 * 300.00317 * 6 5 4 25 25 C 1.52999 * 109.46828 * 90.00003 * 3 2 1 26 26 H 1.09000 * 109.47208 * 300.00192 * 1 2 3 27 27 H 1.09009 * 109.47064 * 59.99609 * 1 2 3 28 28 H 1.09003 * 109.47320 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47285 * 329.99857 * 3 2 1 30 30 H 1.08999 * 109.47045 * 60.00064 * 4 3 2 31 31 H 1.09007 * 109.47028 * 300.00150 * 4 3 2 32 32 H 1.08999 * 109.47129 * 299.99559 * 5 4 3 33 33 H 1.09003 * 109.46908 * 180.02562 * 5 4 3 34 34 H 1.08998 * 109.47442 * 179.97438 * 6 5 4 35 35 H 0.97003 * 119.99656 * 324.99946 * 7 6 5 36 36 H 1.09001 * 109.47485 * 270.00028 * 12 11 8 37 37 H 1.09002 * 109.47148 * 29.99854 * 12 11 8 38 38 H 1.08999 * 109.47537 * 149.99926 * 12 11 8 39 39 H 1.08994 * 109.47214 * 306.02973 * 15 13 11 40 40 H 1.09001 * 109.47238 * 66.02798 * 15 13 11 41 41 H 1.09000 * 109.47181 * 186.02557 * 15 13 11 42 42 H 0.97000 * 120.00499 * 355.10465 * 19 18 16 43 43 H 1.08999 * 109.47045 * 179.97438 * 24 6 5 44 44 H 1.08999 * 109.46705 * 299.99693 * 24 6 5 45 45 H 1.08997 * 109.47004 * 299.99762 * 25 3 2 46 46 H 1.08993 * 109.47217 * 60.00310 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.3589 1.2632 -0.7213 5 6 3.9815 2.6608 -0.7207 6 6 4.1891 3.1261 0.7219 7 7 5.0830 2.1930 1.4122 8 16 6.1528 2.7553 2.5443 9 8 6.8151 3.8654 1.9540 10 8 6.8399 1.6177 3.0469 11 7 5.2622 3.3579 3.8037 12 6 4.8556 4.7653 3.8059 13 6 4.8808 2.4836 4.9156 14 1 5.2697 1.4806 4.7389 15 6 3.3555 2.4274 5.0203 16 6 5.4529 3.0257 6.2000 17 1 5.9641 3.9771 6.2043 18 6 5.3240 2.3071 7.3696 19 7 5.5052 2.9004 8.5292 20 14 4.8993 0.4891 7.3068 21 1 4.8258 -0.0501 8.6886 22 1 3.5870 0.3102 6.6353 23 1 5.9476 -0.2381 6.5470 24 6 2.8404 3.1683 1.4432 25 6 2.2177 1.7712 1.4425 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 1.3451 1.9994 -0.5138 30 1 3.2111 0.9313 -1.7489 31 1 4.0242 0.5692 -0.2074 32 1 3.3165 3.3550 -1.2343 33 1 4.9422 2.6307 -1.2349 34 1 4.6330 4.1216 0.7223 35 1 5.0481 1.2457 1.2062 36 1 5.6210 5.3639 4.2998 37 1 4.7317 5.1094 2.7791 38 1 3.9115 4.8700 4.3405 39 1 2.9585 3.4402 5.0893 40 1 2.9483 1.9371 4.1360 41 1 3.0728 1.8650 5.9102 42 1 5.7987 3.8244 8.5607 43 1 2.9883 3.4994 2.4711 44 1 2.1753 3.8626 0.9296 45 1 1.2569 1.8014 1.9563 46 1 2.8829 1.0774 1.9563 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001363933504.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:39:12 Heat of formation + Delta-G solvation = -131.875122 kcal Electronic energy + Delta-G solvation = -27835.666364 eV Core-core repulsion = 24079.901577 eV Total energy + Delta-G solvation = -3755.764787 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.160 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -39.72090 -37.28253 -36.72870 -36.34104 -35.31529 -32.81493 -32.55700 -31.01885 -29.83765 -28.92801 -26.53497 -25.80001 -24.61320 -22.84850 -22.36358 -20.70501 -20.06840 -18.63401 -17.57251 -17.45498 -16.85050 -16.84275 -16.22141 -15.37085 -15.33984 -14.95260 -14.49292 -14.24314 -14.06440 -13.75032 -13.42142 -13.17950 -13.08327 -12.70087 -12.50942 -12.35179 -12.11468 -12.08016 -11.76213 -11.72239 -11.58377 -11.53345 -11.44510 -11.34178 -11.24495 -11.07080 -10.82076 -10.61825 -10.56192 -10.39512 -9.98811 -9.77361 -9.68879 -9.30855 -9.14374 -8.39813 -8.05089 -6.46874 -4.09938 1.11003 3.34898 3.37564 3.49103 3.53651 3.61366 4.03735 4.46522 4.50812 4.52320 4.74644 4.85588 4.91565 4.98217 5.07941 5.12203 5.18953 5.20761 5.26717 5.29225 5.31561 5.44490 5.47604 5.65264 5.69949 5.83439 5.88181 5.97715 6.00834 6.05248 6.13903 6.20751 6.27914 6.39954 6.41613 6.52038 6.58213 6.94306 7.03029 7.12467 7.31864 7.51848 7.97891 8.36989 8.89667 9.58367 10.91512 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.014069 B = 0.005342 C = 0.004439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1989.669690 B = 5239.992675 C = 6306.200174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.386 6.386 3 C 0.089 3.911 4 C -0.117 4.117 5 C -0.118 4.118 6 C 0.151 3.849 7 N -1.127 6.127 8 S 2.777 3.223 9 O -0.994 6.994 10 O -0.976 6.976 11 N -0.983 5.983 12 C 0.110 3.890 13 C 0.247 3.753 14 H 0.047 0.953 15 C -0.163 4.163 16 C -0.604 4.604 17 H 0.063 0.937 18 C 0.035 3.965 19 N -0.902 5.902 20 Si 1.033 2.967 21 H -0.283 1.283 22 H -0.273 1.273 23 H -0.276 1.276 24 C -0.142 4.142 25 C -0.138 4.138 26 H 0.041 0.959 27 H 0.038 0.962 28 H 0.083 0.917 29 H 0.059 0.941 30 H 0.069 0.931 31 H 0.073 0.927 32 H 0.075 0.925 33 H 0.077 0.923 34 H 0.092 0.908 35 H 0.411 0.589 36 H 0.050 0.950 37 H 0.050 0.950 38 H 0.072 0.928 39 H 0.050 0.950 40 H 0.028 0.972 41 H 0.063 0.937 42 H 0.268 0.732 43 H 0.085 0.915 44 H 0.071 0.929 45 H 0.063 0.937 46 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.720 -0.827 -19.403 22.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.305 6.305 3 C 0.032 3.968 4 C -0.154 4.154 5 C -0.157 4.157 6 C 0.043 3.957 7 N -0.886 5.886 8 S 2.786 3.214 9 O -0.977 6.977 10 O -0.960 6.960 11 N -0.825 5.825 12 C -0.036 4.036 13 C 0.142 3.858 14 H 0.064 0.936 15 C -0.222 4.222 16 C -0.643 4.643 17 H 0.082 0.918 18 C -0.171 4.171 19 N -0.536 5.536 20 Si 0.861 3.139 21 H -0.209 1.209 22 H -0.199 1.199 23 H -0.202 1.202 24 C -0.181 4.181 25 C -0.176 4.176 26 H 0.060 0.940 27 H 0.057 0.943 28 H 0.102 0.898 29 H 0.077 0.923 30 H 0.088 0.912 31 H 0.091 0.909 32 H 0.094 0.906 33 H 0.095 0.905 34 H 0.110 0.890 35 H 0.246 0.754 36 H 0.068 0.932 37 H 0.068 0.932 38 H 0.090 0.910 39 H 0.069 0.931 40 H 0.047 0.953 41 H 0.082 0.918 42 H 0.078 0.922 43 H 0.103 0.897 44 H 0.089 0.911 45 H 0.082 0.918 46 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -9.961 -2.112 -18.476 21.096 hybrid contribution -0.356 1.224 -0.876 1.547 sum -10.317 -0.888 -19.352 21.948 Atomic orbital electron populations 1.22759 0.81344 1.02573 0.99802 1.87914 1.19417 1.28083 1.95081 1.22200 0.94613 0.84189 0.95845 1.21565 0.95454 0.97668 1.00751 1.21744 1.01688 0.96429 0.95847 1.20748 0.90076 0.92901 0.91942 1.56343 1.56566 1.17835 1.57867 1.02018 0.73613 0.73234 0.72526 1.93544 1.72240 1.54100 1.77793 1.93609 1.71227 1.51893 1.79241 1.57465 1.72709 1.17345 1.34967 1.21177 1.01264 0.81374 0.99827 1.18950 0.91687 0.89677 0.85446 0.93554 1.22579 0.98666 1.00974 0.99946 1.22162 1.41259 1.08252 0.92619 0.91836 1.25665 0.94520 1.05071 0.91864 1.70858 1.42079 1.14760 1.25909 0.84228 0.77462 0.75837 0.76347 1.20895 1.19916 1.20175 1.22139 0.96261 0.97074 1.02651 1.21950 1.01544 0.97451 0.96605 0.93999 0.94326 0.89826 0.92320 0.91180 0.90879 0.90629 0.90454 0.89035 0.75415 0.93157 0.93186 0.90963 0.93096 0.95281 0.91825 0.92179 0.89682 0.91084 0.91787 0.90415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 10.82 101.05 1.09 1.35 16 2 O -0.39 -4.28 10.35 -35.23 -0.36 -4.65 16 3 C 0.09 0.86 2.61 -26.73 -0.07 0.79 16 4 C -0.12 -1.06 5.39 -26.73 -0.14 -1.21 16 5 C -0.12 -1.02 5.63 -26.74 -0.15 -1.17 16 6 C 0.15 1.65 3.14 -67.93 -0.21 1.44 16 7 N -1.13 -15.29 4.80 -4.89 -0.02 -15.32 16 8 S 2.78 52.10 6.08 -107.50 -0.65 51.45 16 9 O -0.99 -20.03 16.55 -57.17 -0.95 -20.97 16 10 O -0.98 -22.10 16.70 -57.17 -0.95 -23.05 16 11 N -0.98 -19.24 2.79 -115.85 -0.32 -19.56 16 12 C 0.11 1.86 8.34 59.84 0.50 2.36 16 13 C 0.25 5.62 2.20 -69.09 -0.15 5.47 16 14 H 0.05 1.12 5.57 -51.92 -0.29 0.83 16 15 C -0.16 -3.22 8.55 37.16 0.32 -2.90 16 16 C -0.60 -16.45 8.67 -34.44 -0.30 -16.75 16 17 H 0.06 1.87 7.75 -52.48 -0.41 1.46 16 18 C 0.03 0.99 5.30 -17.82 -0.09 0.89 16 19 N -0.90 -27.19 13.70 55.43 0.76 -26.43 16 20 Si 1.03 24.94 26.29 -169.99 -4.47 20.47 16 21 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 22 H -0.27 -5.89 5.76 56.52 0.33 -5.56 16 23 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 24 C -0.14 -1.47 5.63 -26.75 -0.15 -1.62 16 25 C -0.14 -1.49 4.94 -26.75 -0.13 -1.62 16 26 H 0.04 0.33 7.87 -51.93 -0.41 -0.08 16 27 H 0.04 0.26 8.09 -51.92 -0.42 -0.16 16 28 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.06 0.49 7.79 -51.93 -0.40 0.08 16 30 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.07 0.73 6.50 -51.93 -0.34 0.39 16 32 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 33 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 34 H 0.09 1.02 7.06 -51.93 -0.37 0.65 16 35 H 0.41 5.06 6.81 -34.48 -0.23 4.83 16 36 H 0.05 0.92 8.09 -51.93 -0.42 0.50 16 37 H 0.05 0.68 7.35 -51.93 -0.38 0.30 16 38 H 0.07 1.16 6.32 -51.93 -0.33 0.84 16 39 H 0.05 0.95 6.44 -51.93 -0.33 0.62 16 40 H 0.03 0.48 7.15 -51.93 -0.37 0.11 16 41 H 0.06 1.35 4.88 -51.93 -0.25 1.10 16 42 H 0.27 8.05 8.73 -40.82 -0.36 7.69 16 43 H 0.08 1.01 5.80 -51.93 -0.30 0.71 16 44 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 45 H 0.06 0.68 7.87 -51.93 -0.41 0.27 16 46 H 0.08 0.98 7.27 -51.93 -0.38 0.61 16 LS Contribution 356.51 15.07 5.37 5.37 Total: -1.00 -33.83 356.51 -8.49 -42.32 By element: Atomic # 1 Polarization: 10.71 SS G_CDS: -7.39 Total: 3.33 kcal Atomic # 6 Polarization: -13.46 SS G_CDS: 0.50 Total: -12.96 kcal Atomic # 7 Polarization: -61.72 SS G_CDS: 0.41 Total: -61.30 kcal Atomic # 8 Polarization: -46.41 SS G_CDS: -2.27 Total: -48.67 kcal Atomic # 14 Polarization: 24.94 SS G_CDS: -4.47 Total: 20.47 kcal Atomic # 16 Polarization: 52.10 SS G_CDS: -0.65 Total: 51.45 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -33.83 -8.49 -42.32 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001363933504.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.559 kcal (2) G-P(sol) polarization free energy of solvation -33.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.316 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.875 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds