Wall clock time and date at job start Tue Mar 31 2020 14:02:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.47891 * 111.01598 * 2 1 4 4 C 1.54906 * 104.77413 * 146.33129 * 3 2 1 5 5 C 1.55136 * 101.68907 * 322.98023 * 4 3 2 6 6 O 1.42903 * 110.70701 * 277.25795 * 5 4 3 7 7 C 1.52998 * 110.70600 * 154.19382 * 5 4 3 8 8 N 1.46501 * 109.47224 * 184.99921 * 7 5 4 9 9 C 1.34770 * 120.00351 * 179.97438 * 8 7 5 10 10 O 1.21589 * 119.99750 * 0.02562 * 9 8 7 11 11 N 1.34780 * 120.00632 * 179.97438 * 9 8 7 12 12 C 1.39453 * 120.00471 * 175.45915 * 11 9 8 13 13 C 1.38640 * 119.65018 * 186.28937 * 12 11 9 14 14 C 1.40827 * 118.67514 * 180.02562 * 13 12 11 15 15 C 1.41539 * 120.99478 * 179.97438 * 14 13 12 16 16 H 1.08002 * 119.99782 * 201.14403 * 15 14 13 17 17 C 1.40027 * 120.00099 * 21.15254 * 15 14 13 18 18 N 1.30744 * 120.00126 * 12.10271 * 17 15 14 19 19 Si 1.86808 * 119.99978 * 192.10017 * 17 15 14 20 20 H 1.48500 * 109.46867 * 89.99749 * 19 17 15 21 21 H 1.48493 * 109.47280 * 209.99806 * 19 17 15 22 22 H 1.48503 * 109.46763 * 330.00104 * 19 17 15 23 23 C 1.41162 * 118.00327 * 359.97438 * 14 13 12 24 24 C 1.36592 * 119.13250 * 0.02562 * 23 14 13 25 25 N 1.32073 * 121.25276 * 359.71987 * 24 23 14 26 26 C 1.47443 * 111.00338 * 120.87662 * 2 1 3 27 27 H 1.08997 * 109.46905 * 299.11839 * 1 2 3 28 28 H 1.08991 * 109.47183 * 59.12461 * 1 2 3 29 29 H 1.08999 * 109.46686 * 179.12528 * 1 2 3 30 30 H 1.08998 * 110.35541 * 27.51992 * 3 2 1 31 31 H 1.08997 * 110.40835 * 265.16730 * 3 2 1 32 32 H 1.09005 * 110.98992 * 204.87052 * 4 3 2 33 33 H 1.08995 * 110.99224 * 81.09252 * 4 3 2 34 34 H 0.96699 * 113.99789 * 180.02562 * 6 5 4 35 35 H 1.09002 * 109.47099 * 304.99906 * 7 5 4 36 36 H 1.08997 * 109.47255 * 65.00170 * 7 5 4 37 37 H 0.97005 * 119.99959 * 0.02562 * 8 7 5 38 38 H 0.97004 * 119.99203 * 355.46355 * 11 9 8 39 39 H 1.07992 * 120.66433 * 0.02562 * 13 12 11 40 40 H 0.97001 * 119.99980 * 180.02562 * 18 17 15 41 41 H 1.07999 * 120.43376 * 179.97438 * 23 14 13 42 42 H 1.07997 * 119.37703 * 180.02562 * 24 23 14 43 43 H 1.09000 * 109.89144 * 117.33552 * 26 2 1 44 44 H 1.09005 * 109.88728 * 356.14964 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9994 1.3805 0.0000 4 6 3.3047 1.3022 0.8304 5 6 2.9159 0.2810 1.9316 6 8 2.2060 0.9260 2.9909 7 6 4.1575 -0.4322 2.4707 8 7 3.7503 -1.4711 3.4199 9 6 4.6823 -2.2338 4.0250 10 8 5.8611 -2.0592 3.7835 11 7 4.3078 -3.1893 4.8987 12 6 5.2631 -4.0408 5.4528 13 6 4.8576 -5.1023 6.2471 14 6 5.8396 -5.9489 6.7966 15 6 5.4806 -7.0466 7.6148 16 1 6.2040 -7.4732 8.2940 17 6 4.1878 -7.5797 7.5436 18 7 3.3894 -7.2303 6.5689 19 14 3.6037 -8.7901 8.8410 20 1 2.9683 -8.0484 9.9596 21 1 2.6155 -9.7214 8.2401 22 1 4.7633 -9.5627 9.3548 23 6 7.1927 -5.6699 6.5069 24 6 7.4960 -4.6003 5.7133 25 7 6.5485 -3.8297 5.2104 26 6 1.9975 -0.7064 1.1814 27 1 -0.3633 0.5001 0.8978 28 1 -0.3633 0.5273 -0.8820 29 1 -0.3633 -1.0276 -0.0157 30 1 1.2894 2.0595 0.4722 31 1 2.2160 1.7045 -1.0179 32 1 3.5495 2.2713 1.2654 33 1 4.1306 0.9284 0.2253 34 1 1.9401 0.3312 3.7055 35 1 4.7021 -0.8885 1.6441 36 1 4.8004 0.2891 2.9753 37 1 2.8099 -1.6106 3.6124 38 1 3.3736 -3.2847 5.1420 39 1 3.8095 -5.2764 6.4406 40 1 2.4936 -7.5993 6.5198 41 1 7.9779 -6.2934 6.9081 42 1 8.5298 -4.3834 5.4887 43 1 2.5698 -1.5790 0.8665 44 1 1.1756 -1.0131 1.8284 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001364165980.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:02:55 Heat of formation + Delta-G solvation = -24.971062 kcal Electronic energy + Delta-G solvation = -26603.200715 eV Core-core repulsion = 22748.920435 eV Total energy + Delta-G solvation = -3854.280279 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.40923 -39.50064 -37.98961 -36.30665 -34.49274 -33.96875 -33.75534 -31.83268 -30.50467 -29.47889 -28.39067 -26.78984 -26.02208 -24.53526 -22.06923 -21.81948 -21.37147 -20.71044 -20.09486 -18.46973 -17.68588 -17.30148 -16.30268 -15.67698 -15.62998 -15.38681 -15.24012 -14.86041 -14.44783 -14.25189 -14.16857 -13.99469 -13.71152 -13.50238 -13.18767 -12.91434 -12.82016 -12.61457 -12.32145 -12.06041 -11.87006 -11.69359 -11.54832 -11.44684 -11.20719 -11.15198 -10.91180 -10.44914 -10.29682 -10.11159 -9.80154 -9.62992 -9.41509 -8.93035 -8.63971 -7.99570 -7.74056 -7.01355 -6.77131 -4.64701 2.68526 2.79558 2.90715 2.99477 3.03008 3.24589 3.60446 3.73735 3.82156 3.85375 4.13302 4.29030 4.41813 4.55939 4.68533 4.95964 4.96336 5.06478 5.10739 5.27086 5.46906 5.53301 5.55501 5.59419 5.64734 5.71107 5.73850 5.76951 5.95433 6.49792 6.54413 6.57788 6.61204 6.66434 6.80379 6.91740 7.15540 7.19543 7.24214 7.42984 7.48749 7.86696 8.08951 8.33820 8.45936 8.72326 8.74724 9.13527 9.73484 10.04414 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.018788 B = 0.002655 C = 0.002400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1489.986284 B =10544.056354 C =11665.984742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.530 5.530 3 C 0.043 3.957 4 C -0.112 4.112 5 C 0.100 3.900 6 O -0.550 6.550 7 C 0.126 3.874 8 N -0.756 5.756 9 C 0.693 3.307 10 O -0.529 6.529 11 N -0.666 5.666 12 C 0.352 3.648 13 C -0.250 4.250 14 C 0.139 3.861 15 C -0.449 4.449 16 H 0.082 0.918 17 C 0.074 3.926 18 N -0.791 5.791 19 Si 0.915 3.085 20 H -0.267 1.267 21 H -0.277 1.277 22 H -0.261 1.261 23 C -0.284 4.284 24 C 0.119 3.881 25 N -0.554 5.554 26 C 0.017 3.983 27 H 0.029 0.971 28 H 0.068 0.932 29 H 0.068 0.932 30 H 0.052 0.948 31 H 0.083 0.917 32 H 0.088 0.912 33 H 0.095 0.905 34 H 0.377 0.623 35 H 0.078 0.922 36 H 0.075 0.925 37 H 0.386 0.614 38 H 0.403 0.597 39 H 0.139 0.861 40 H 0.281 0.719 41 H 0.101 0.899 42 H 0.122 0.878 43 H 0.092 0.908 44 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.157 12.214 -8.635 17.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 N -0.254 5.254 3 C -0.084 4.084 4 C -0.151 4.151 5 C 0.058 3.942 6 O -0.357 6.357 7 C 0.001 3.999 8 N -0.416 5.416 9 C 0.392 3.608 10 O -0.400 6.400 11 N -0.314 5.314 12 C 0.127 3.873 13 C -0.275 4.275 14 C 0.131 3.869 15 C -0.480 4.480 16 H 0.100 0.900 17 C -0.144 4.144 18 N -0.417 5.417 19 Si 0.739 3.261 20 H -0.192 1.192 21 H -0.202 1.202 22 H -0.185 1.185 23 C -0.308 4.308 24 C -0.035 4.035 25 N -0.273 5.273 26 C -0.111 4.111 27 H 0.048 0.952 28 H 0.086 0.914 29 H 0.087 0.913 30 H 0.070 0.930 31 H 0.101 0.899 32 H 0.106 0.894 33 H 0.113 0.887 34 H 0.225 0.775 35 H 0.096 0.904 36 H 0.094 0.906 37 H 0.219 0.781 38 H 0.238 0.762 39 H 0.157 0.843 40 H 0.092 0.908 41 H 0.119 0.881 42 H 0.139 0.861 43 H 0.110 0.890 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -7.787 13.346 -10.393 18.622 hybrid contribution -1.989 -1.611 2.347 3.472 sum -9.776 11.735 -8.047 17.264 Atomic orbital electron populations 1.22553 0.87505 1.02152 1.00748 1.63636 1.08190 1.14384 1.39212 1.23068 0.95394 0.89587 1.00347 1.22691 0.98331 0.99425 0.94626 1.22753 0.90812 0.92772 0.87896 1.86547 1.76446 1.39426 1.33235 1.21686 0.95728 0.89637 0.92889 1.45133 1.08577 1.39196 1.48659 1.16042 0.85283 0.79676 0.79802 1.91028 1.14886 1.69349 1.64725 1.42524 1.10199 1.33500 1.45191 1.17984 0.87255 0.88671 0.93432 1.21777 1.02036 0.96452 1.07284 1.17589 0.90156 0.90509 0.88685 1.19623 0.96678 1.12147 1.19530 0.90028 1.25982 0.96313 0.96823 0.95265 1.69739 1.07847 1.37363 1.26728 0.86194 0.79245 0.79846 0.80772 1.19224 1.20201 1.18494 1.21649 0.96946 1.03360 1.08887 1.21466 0.96498 0.91489 0.94013 1.67195 0.98884 1.32210 1.29055 1.23609 0.98389 0.97805 0.91322 0.95196 0.91353 0.91322 0.93003 0.89869 0.89386 0.88683 0.77489 0.90380 0.90631 0.78085 0.76250 0.84332 0.90833 0.88081 0.86058 0.88966 0.91992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.15 9.12 60.06 0.55 0.70 16 2 N -0.53 -4.94 5.44 -239.49 -1.30 -6.24 16 3 C 0.04 0.36 6.73 -2.27 -0.02 0.35 16 4 C -0.11 -0.95 6.24 -24.60 -0.15 -1.11 16 5 C 0.10 0.93 0.93 -88.80 -0.08 0.85 16 6 O -0.55 -5.27 13.10 -35.23 -0.46 -5.73 16 7 C 0.13 1.47 4.74 -4.04 -0.02 1.45 16 8 N -0.76 -9.64 5.13 -65.23 -0.33 -9.97 16 9 C 0.69 13.05 8.52 -86.92 -0.74 12.31 16 10 O -0.53 -12.48 14.60 5.29 0.08 -12.40 16 11 N -0.67 -12.89 5.39 -15.86 -0.09 -12.97 16 12 C 0.35 8.56 7.42 -154.68 -1.15 7.41 16 13 C -0.25 -6.29 8.67 -38.45 -0.33 -6.62 16 14 C 0.14 3.64 5.65 -106.55 -0.60 3.04 16 15 C -0.45 -11.42 9.15 -37.65 -0.34 -11.76 16 16 H 0.08 1.99 7.88 -52.49 -0.41 1.58 16 17 C 0.07 1.77 5.31 -17.34 -0.09 1.67 16 18 N -0.79 -19.06 10.50 55.55 0.58 -18.48 16 19 Si 0.92 17.69 29.58 -169.99 -5.03 12.66 16 20 H -0.27 -5.10 7.11 56.52 0.40 -4.69 16 21 H -0.28 -5.25 7.11 56.52 0.40 -4.84 16 22 H -0.26 -5.03 7.11 56.52 0.40 -4.63 16 23 C -0.28 -7.00 9.85 -39.07 -0.38 -7.38 16 24 C 0.12 2.89 11.10 -18.04 -0.20 2.69 16 25 N -0.55 -14.33 7.86 -12.76 -0.10 -14.43 16 26 C 0.02 0.16 5.69 -2.84 -0.02 0.14 16 27 H 0.03 0.23 8.10 -51.93 -0.42 -0.19 16 28 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.05 0.44 7.78 -51.93 -0.40 0.04 16 31 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.09 0.75 8.04 -51.93 -0.42 0.33 16 34 H 0.38 2.67 8.05 45.56 0.37 3.03 16 35 H 0.08 0.99 8.13 -51.93 -0.42 0.56 16 36 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 37 H 0.39 3.64 7.40 -40.82 -0.30 3.33 16 38 H 0.40 6.25 8.72 -40.82 -0.36 5.90 16 39 H 0.14 3.45 5.81 -52.49 -0.30 3.14 16 40 H 0.28 6.10 8.29 -40.82 -0.34 5.77 16 41 H 0.10 2.28 8.06 -52.49 -0.42 1.85 16 42 H 0.12 2.59 8.06 -52.49 -0.42 2.17 16 43 H 0.09 0.95 7.83 -51.93 -0.41 0.54 16 44 H 0.06 0.51 7.51 -51.93 -0.39 0.12 16 LS Contribution 362.42 15.07 5.46 5.46 Total: -1.00 -32.83 362.42 -10.34 -43.17 By element: Atomic # 1 Polarization: 20.76 SS G_CDS: -5.56 Total: 15.20 kcal Atomic # 6 Polarization: 7.31 SS G_CDS: -3.58 Total: 3.73 kcal Atomic # 7 Polarization: -60.85 SS G_CDS: -1.24 Total: -62.09 kcal Atomic # 8 Polarization: -17.75 SS G_CDS: -0.38 Total: -18.13 kcal Atomic # 14 Polarization: 17.69 SS G_CDS: -5.03 Total: 12.66 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -32.83 -10.34 -43.17 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364165980.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.194 kcal (2) G-P(sol) polarization free energy of solvation -32.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.632 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.165 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds