Wall clock time and date at job start Tue Mar 31 2020 14:02:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.48528 * 110.99940 * 2 1 4 4 C 1.54939 * 103.23049 * 200.28112 * 3 2 1 5 5 C 1.54594 * 102.91766 * 37.41561 * 4 3 2 6 6 O 1.42893 * 110.39480 * 97.00522 * 5 4 3 7 7 C 1.52999 * 110.30825 * 219.12922 * 5 4 3 8 8 N 1.46503 * 109.47194 * 177.17118 * 7 5 4 9 9 C 1.34779 * 119.99882 * 180.02562 * 8 7 5 10 10 O 1.21572 * 120.00139 * 359.97438 * 9 8 7 11 11 N 1.34774 * 119.99669 * 180.02562 * 9 8 7 12 12 C 1.39463 * 120.00042 * 185.18701 * 11 9 8 13 13 C 1.38644 * 119.65281 * 174.88548 * 12 11 9 14 14 C 1.40814 * 118.67784 * 179.72406 * 13 12 11 15 15 C 1.41545 * 121.00075 * 179.97438 * 14 13 12 16 16 H 1.08004 * 120.00291 * 150.53658 * 15 14 13 17 17 C 1.40027 * 119.99445 * 330.53851 * 15 14 13 18 18 N 1.30751 * 119.99737 * 164.47576 * 17 15 14 19 19 Si 1.86801 * 120.00527 * 344.47012 * 17 15 14 20 20 H 1.48507 * 109.46864 * 90.06370 * 19 17 15 21 21 H 1.48497 * 109.47313 * 210.06559 * 19 17 15 22 22 H 1.48507 * 109.46804 * 330.06970 * 19 17 15 23 23 C 1.41168 * 118.00385 * 359.97438 * 14 13 12 24 24 C 1.36589 * 119.12677 * 0.02562 * 23 14 13 25 25 N 1.32065 * 121.25924 * 359.97438 * 24 23 14 26 26 C 1.47901 * 110.99906 * 242.60905 * 2 1 3 27 27 H 1.09002 * 109.47016 * 177.39328 * 1 2 3 28 28 H 1.09000 * 109.46699 * 297.39493 * 1 2 3 29 29 H 1.08997 * 109.47128 * 57.39075 * 1 2 3 30 30 H 1.09006 * 110.67220 * 318.71908 * 3 2 1 31 31 H 1.09004 * 110.66801 * 81.67745 * 3 2 1 32 32 H 1.09004 * 110.72041 * 279.05959 * 4 3 2 33 33 H 1.08998 * 110.73048 * 155.77332 * 4 3 2 34 34 H 0.96697 * 114.00440 * 181.44149 * 6 5 4 35 35 H 1.09005 * 109.47248 * 57.17352 * 7 5 4 36 36 H 1.09000 * 109.47331 * 297.16893 * 7 5 4 37 37 H 0.96993 * 120.00385 * 359.97438 * 8 7 5 38 38 H 0.96996 * 120.00366 * 5.18351 * 11 9 8 39 39 H 1.08004 * 120.65848 * 359.73428 * 13 12 11 40 40 H 0.97002 * 119.99756 * 180.02562 * 18 17 15 41 41 H 1.08002 * 120.43368 * 179.97438 * 23 14 13 42 42 H 1.08000 * 119.36759 * 180.02562 * 24 23 14 43 43 H 1.09005 * 109.91774 * 26.48702 * 26 2 1 44 44 H 1.08999 * 110.07834 * 265.28782 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 2.0013 1.3866 0.0000 4 6 3.4492 1.2107 -0.5228 5 6 3.2982 0.1055 -1.5931 6 8 3.1881 0.6845 -2.8948 7 6 4.4895 -0.8530 -1.5384 8 7 4.2953 -1.9297 -2.5127 9 6 5.2244 -2.8975 -2.6418 10 8 6.2239 -2.8768 -1.9500 11 7 5.0458 -3.8877 -3.5385 12 6 5.9515 -4.9466 -3.5975 13 6 5.7046 -6.0137 -4.4476 14 6 6.6357 -7.0691 -4.4953 15 6 6.4324 -8.1827 -5.3449 16 1 7.2804 -8.7191 -5.7445 17 6 5.1317 -8.5890 -5.6674 18 7 4.9311 -9.4036 -6.6703 19 14 3.6833 -7.9675 -4.6648 20 1 3.1707 -6.7088 -5.2635 21 1 2.6064 -8.9899 -4.6644 22 1 4.1216 -7.7093 -3.2696 23 6 7.7779 -6.9831 -3.6702 24 6 7.9355 -5.8914 -2.8646 25 7 7.0417 -4.9193 -2.8451 26 6 1.9991 -0.6352 -1.2260 27 1 -0.3633 -1.0266 -0.0467 28 1 -0.3633 0.4729 0.9124 29 1 -0.3633 0.5538 -0.8656 30 1 1.4237 2.0205 -0.6729 31 1 2.0014 1.7987 1.0091 32 1 4.1116 0.8836 0.2787 33 1 3.8123 2.1352 -0.9716 34 1 3.0690 0.0382 -3.6041 35 1 4.5681 -1.2783 -0.5378 36 1 5.4043 -0.3096 -1.7751 37 1 3.4977 -1.9465 -3.0644 38 1 4.2874 -3.8639 -4.1427 39 1 4.8160 -6.0350 -5.0611 40 1 4.0300 -9.6847 -6.8939 41 1 8.5170 -7.7706 -3.6753 42 1 8.8081 -5.8214 -2.2321 43 1 1.2758 -0.5401 -2.0359 44 1 2.2117 -1.6880 -1.0400 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001364165982.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:02:59 Heat of formation + Delta-G solvation = -22.087297 kcal Electronic energy + Delta-G solvation = -26759.615317 eV Core-core repulsion = 22905.460087 eV Total energy + Delta-G solvation = -3854.155230 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.53334 -39.68346 -38.24455 -36.49827 -34.57557 -34.09261 -33.79780 -31.93107 -31.29381 -29.60203 -28.61586 -26.92131 -26.00520 -24.59193 -22.37491 -22.13715 -21.48195 -20.67541 -20.17582 -18.70785 -17.76355 -17.45530 -16.49077 -15.92143 -15.66758 -15.62533 -15.23951 -14.99965 -14.76838 -14.53666 -14.21049 -14.16894 -13.91157 -13.47783 -13.38287 -13.13184 -12.98783 -12.91821 -12.55989 -12.16467 -11.88156 -11.80879 -11.66781 -11.62138 -11.22209 -10.98020 -10.83873 -10.72260 -10.44068 -10.08558 -9.96445 -9.74090 -9.38398 -9.05050 -8.87619 -8.24332 -7.88384 -7.28292 -7.08279 -4.75587 2.38821 2.61206 2.73363 2.97512 3.10111 3.22733 3.48093 3.64320 3.81385 3.85588 4.05794 4.18295 4.28048 4.44059 4.56735 4.83950 4.91288 4.98687 5.01288 5.19345 5.40238 5.41148 5.41800 5.48743 5.49945 5.56498 5.61976 5.67637 5.77209 6.22598 6.31582 6.36347 6.41069 6.44149 6.53392 6.55550 6.87833 6.99820 7.15869 7.18336 7.26962 7.63194 7.91158 8.12850 8.20097 8.42896 8.63510 8.93055 9.46991 9.93100 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.018489 B = 0.002968 C = 0.002691 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1514.017610 B = 9431.930014 C =10403.072390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 N -0.517 5.517 3 C 0.034 3.966 4 C -0.108 4.108 5 C 0.112 3.888 6 O -0.551 6.551 7 C 0.124 3.876 8 N -0.755 5.755 9 C 0.694 3.306 10 O -0.523 6.523 11 N -0.672 5.672 12 C 0.387 3.613 13 C -0.327 4.327 14 C 0.129 3.871 15 C -0.437 4.437 16 H 0.096 0.904 17 C 0.085 3.915 18 N -0.801 5.801 19 Si 0.921 3.079 20 H -0.271 1.271 21 H -0.291 1.291 22 H -0.248 1.248 23 C -0.271 4.271 24 C 0.130 3.870 25 N -0.554 5.554 26 C 0.006 3.994 27 H 0.070 0.930 28 H 0.071 0.929 29 H 0.029 0.971 30 H 0.049 0.951 31 H 0.087 0.913 32 H 0.094 0.906 33 H 0.088 0.912 34 H 0.376 0.624 35 H 0.080 0.920 36 H 0.076 0.924 37 H 0.386 0.614 38 H 0.403 0.597 39 H 0.110 0.890 40 H 0.288 0.712 41 H 0.110 0.890 42 H 0.129 0.871 43 H 0.055 0.945 44 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.778 17.579 7.973 22.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 N -0.241 5.241 3 C -0.093 4.093 4 C -0.146 4.146 5 C 0.070 3.930 6 O -0.357 6.357 7 C -0.001 4.001 8 N -0.414 5.414 9 C 0.393 3.607 10 O -0.393 6.393 11 N -0.320 5.320 12 C 0.158 3.842 13 C -0.353 4.353 14 C 0.121 3.879 15 C -0.467 4.467 16 H 0.114 0.886 17 C -0.135 4.135 18 N -0.425 5.425 19 Si 0.749 3.251 20 H -0.197 1.197 21 H -0.219 1.219 22 H -0.171 1.171 23 C -0.295 4.295 24 C -0.022 4.022 25 N -0.274 5.274 26 C -0.123 4.123 27 H 0.089 0.911 28 H 0.090 0.910 29 H 0.047 0.953 30 H 0.067 0.933 31 H 0.105 0.895 32 H 0.112 0.888 33 H 0.107 0.893 34 H 0.224 0.776 35 H 0.099 0.901 36 H 0.095 0.905 37 H 0.220 0.780 38 H 0.238 0.762 39 H 0.128 0.872 40 H 0.098 0.902 41 H 0.128 0.872 42 H 0.146 0.854 43 H 0.074 0.926 44 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -9.582 18.446 9.866 23.009 hybrid contribution -2.142 -0.775 -2.034 3.054 sum -11.724 17.671 7.832 22.607 Atomic orbital electron populations 1.22541 0.87532 1.02266 1.01048 1.64774 1.08424 1.14998 1.35919 1.23284 0.94678 0.89963 1.01406 1.22481 0.97376 0.98301 0.96422 1.22340 0.93080 0.93069 0.84482 1.86594 1.95761 1.37657 1.15671 1.21805 0.97792 0.87009 0.93450 1.45148 1.24147 1.27985 1.44164 1.15993 0.83490 0.79544 0.81625 1.91038 1.27287 1.75200 1.45798 1.42623 1.28963 1.22441 1.37945 1.17753 0.88559 0.85243 0.92619 1.21259 1.06356 0.97447 1.10267 1.17687 0.90152 0.91267 0.88811 1.19503 0.94193 1.10468 1.22584 0.88634 1.26197 1.00829 0.93104 0.93405 1.69639 1.24948 1.26256 1.21678 0.86202 0.78903 0.77438 0.82603 1.19741 1.21902 1.17108 1.21688 1.02797 1.01416 1.03589 1.21627 0.95594 0.89133 0.95817 1.67308 1.03570 1.29945 1.26527 1.23729 0.95808 1.00497 0.92263 0.91150 0.91022 0.95267 0.93276 0.89473 0.88757 0.89299 0.77575 0.90150 0.90531 0.78047 0.76229 0.87228 0.90191 0.87204 0.85353 0.92649 0.89020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.11 9.40 60.07 0.56 0.67 16 2 N -0.52 -4.54 5.55 -238.71 -1.33 -5.86 16 3 C 0.03 0.26 6.56 -1.90 -0.01 0.25 16 4 C -0.11 -0.86 6.36 -24.87 -0.16 -1.02 16 5 C 0.11 0.98 1.06 -89.27 -0.09 0.89 16 6 O -0.55 -4.91 12.95 -35.23 -0.46 -5.37 16 7 C 0.12 1.38 4.56 -4.04 -0.02 1.36 16 8 N -0.76 -9.00 4.89 -65.22 -0.32 -9.31 16 9 C 0.69 12.31 8.52 -86.92 -0.74 11.57 16 10 O -0.52 -11.70 14.60 5.30 0.08 -11.62 16 11 N -0.67 -12.20 5.40 -15.86 -0.09 -12.28 16 12 C 0.39 8.84 7.42 -154.68 -1.15 7.69 16 13 C -0.33 -7.71 7.15 -38.46 -0.27 -7.99 16 14 C 0.13 3.24 5.16 -106.55 -0.55 2.69 16 15 C -0.44 -11.43 9.65 -37.65 -0.36 -11.79 16 16 H 0.10 2.60 8.06 -52.48 -0.42 2.18 16 17 C 0.09 2.14 5.46 -17.34 -0.09 2.04 16 18 N -0.80 -20.44 13.92 55.55 0.77 -19.66 16 19 Si 0.92 20.00 24.50 -169.99 -4.17 15.83 16 20 H -0.27 -5.46 6.48 56.52 0.37 -5.09 16 21 H -0.29 -6.10 7.11 56.52 0.40 -5.70 16 22 H -0.25 -5.69 6.94 56.52 0.39 -5.30 16 23 C -0.27 -6.32 9.85 -39.07 -0.38 -6.71 16 24 C 0.13 2.95 11.10 -18.05 -0.20 2.75 16 25 N -0.55 -13.50 7.86 -12.76 -0.10 -13.60 16 26 C 0.01 0.05 5.67 -2.76 -0.02 0.03 16 27 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.03 0.20 8.00 -51.93 -0.42 -0.22 16 30 H 0.05 0.37 7.96 -51.93 -0.41 -0.04 16 31 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.09 0.72 7.86 -51.93 -0.41 0.31 16 33 H 0.09 0.69 8.08 -51.93 -0.42 0.27 16 34 H 0.38 2.35 7.98 45.56 0.36 2.71 16 35 H 0.08 0.99 8.13 -51.93 -0.42 0.57 16 36 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 37 H 0.39 3.28 7.30 -40.82 -0.30 2.98 16 38 H 0.40 5.74 8.71 -40.82 -0.36 5.39 16 39 H 0.11 2.46 4.45 -52.48 -0.23 2.23 16 40 H 0.29 6.60 8.29 -40.82 -0.34 6.27 16 41 H 0.11 2.35 8.06 -52.49 -0.42 1.93 16 42 H 0.13 2.52 8.06 -52.49 -0.42 2.10 16 43 H 0.06 0.43 7.55 -51.93 -0.39 0.04 16 44 H 0.09 0.87 7.41 -51.93 -0.38 0.49 16 LS Contribution 356.57 15.07 5.37 5.37 Total: -1.00 -32.97 356.57 -9.24 -42.20 By element: Atomic # 1 Polarization: 17.39 SS G_CDS: -5.52 Total: 11.87 kcal Atomic # 6 Polarization: 5.92 SS G_CDS: -3.49 Total: 2.43 kcal Atomic # 7 Polarization: -59.67 SS G_CDS: -1.06 Total: -60.73 kcal Atomic # 8 Polarization: -16.61 SS G_CDS: -0.38 Total: -16.99 kcal Atomic # 14 Polarization: 20.00 SS G_CDS: -4.17 Total: 15.83 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -32.97 -9.24 -42.20 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364165982.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.117 kcal (2) G-P(sol) polarization free energy of solvation -32.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.204 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds