Wall clock time and date at job start Tue Mar 31 2020 12:38:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42899 * 113.99778 * 2 1 4 4 C 1.52999 * 109.46889 * 180.02562 * 3 2 1 5 5 C 1.52993 * 110.88889 * 59.29975 * 4 3 2 6 6 C 1.55159 * 111.00313 * 295.41548 * 4 3 2 7 7 C 1.54371 * 102.92049 * 206.45294 * 6 4 3 8 8 N 1.47026 * 107.28744 * 22.14402 * 7 6 4 9 9 S 1.65603 * 125.64384 * 181.12524 * 8 7 6 10 10 O 1.42094 * 106.40353 * 23.49772 * 9 8 7 11 11 O 1.42098 * 106.39828 * 156.41944 * 9 8 7 12 12 N 1.65599 * 107.21731 * 269.95576 * 9 8 7 13 13 C 1.46503 * 119.99894 * 90.00521 * 12 9 8 14 14 C 1.46505 * 120.00018 * 270.00007 * 12 9 8 15 15 H 1.09001 * 109.46955 * 0.02562 * 14 12 9 16 16 C 1.52989 * 109.47306 * 240.00165 * 14 12 9 17 17 C 1.50702 * 109.46686 * 120.00245 * 14 12 9 18 18 H 1.08004 * 120.00108 * 0.02562 * 17 14 12 19 19 C 1.37877 * 120.00088 * 180.02562 * 17 14 12 20 20 N 1.31518 * 119.99711 * 359.97438 * 19 17 14 21 21 Si 1.86800 * 120.00429 * 179.97438 * 19 17 14 22 22 H 1.48507 * 109.46722 * 59.99724 * 21 19 17 23 23 H 1.48504 * 109.47171 * 179.97438 * 21 19 17 24 24 H 1.48500 * 109.47131 * 300.00119 * 21 19 17 25 25 C 1.47425 * 108.70385 * 1.09082 * 8 7 6 26 26 H 1.09001 * 109.47103 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.47054 * 299.99711 * 1 2 3 28 28 H 1.09000 * 109.47187 * 59.99767 * 1 2 3 29 29 H 1.08997 * 109.47442 * 300.00036 * 3 2 1 30 30 H 1.08997 * 109.47171 * 60.00232 * 3 2 1 31 31 H 1.09006 * 109.47266 * 60.70142 * 5 4 3 32 32 H 1.08998 * 109.47060 * 180.69779 * 5 4 3 33 33 H 1.09000 * 109.47203 * 300.70362 * 5 4 3 34 34 H 1.09001 * 110.72298 * 324.79084 * 6 4 3 35 35 H 1.08999 * 110.71791 * 88.06484 * 6 4 3 36 36 H 1.09000 * 109.84796 * 262.73044 * 7 6 4 37 37 H 1.09007 * 110.02582 * 141.65355 * 7 6 4 38 38 H 1.08997 * 109.46772 * 90.00078 * 13 12 9 39 39 H 1.09002 * 109.47011 * 209.99909 * 13 12 9 40 40 H 1.08999 * 109.47041 * 329.99659 * 13 12 9 41 41 H 1.09001 * 109.47728 * 300.00279 * 16 14 12 42 42 H 1.09004 * 109.47250 * 60.00067 * 16 14 12 43 43 H 1.09005 * 109.47499 * 180.02562 * 16 14 12 44 44 H 0.97000 * 119.99860 * 179.97438 * 20 19 17 45 45 H 1.09002 * 110.36191 * 217.03570 * 25 8 7 46 46 H 1.08991 * 110.36639 * 94.71225 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 6 4.0211 0.4143 -1.2300 6 6 4.0413 0.5208 1.3073 7 6 5.4716 1.0839 1.4495 8 7 5.5295 2.3306 0.6723 9 16 6.8642 3.2942 0.4920 10 8 7.9934 2.4629 0.7220 11 8 6.6705 4.0270 -0.7100 12 7 6.8397 4.4010 1.7235 13 6 7.5004 4.0967 2.9952 14 6 6.1574 5.6846 1.5413 15 1 5.7290 5.7295 0.5400 16 6 7.1611 6.8255 1.7187 17 6 5.0585 5.8189 2.5639 18 1 4.8859 5.0274 3.2782 19 6 4.2734 6.9520 2.5874 20 7 4.4839 7.9160 1.7178 21 14 2.9108 7.1182 3.8544 22 1 3.4937 7.0571 5.2189 23 1 2.2192 8.4194 3.6698 24 1 1.9369 6.0106 3.6821 25 6 4.2029 2.5803 0.0796 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 1.6886 1.8464 -0.8899 30 1 1.6886 1.8464 0.8900 31 1 3.7214 0.9455 -2.1335 32 1 5.1075 0.3313 -1.2009 33 1 3.5803 -0.5826 -1.2317 34 1 3.4238 0.8186 2.1548 35 1 4.0617 -0.5643 1.2061 36 1 6.1922 0.3674 1.0553 37 1 5.6892 1.2899 2.4976 38 1 8.5360 4.4345 2.9564 39 1 6.9815 4.6082 3.8058 40 1 7.4753 3.0210 3.1693 41 1 7.5893 6.7805 2.7201 42 1 7.9560 6.7284 0.9791 43 1 6.6534 7.7806 1.5836 44 1 3.9313 8.7131 1.7342 45 1 4.3075 3.0087 -0.9172 46 1 3.6204 3.2433 0.7192 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001413348946.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:38:41 Heat of formation + Delta-G solvation = -120.831621 kcal Electronic energy + Delta-G solvation = -27443.031179 eV Core-core repulsion = 23687.745274 eV Total energy + Delta-G solvation = -3755.285905 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.160 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -39.38973 -37.30870 -36.68724 -36.12706 -35.23675 -32.61658 -32.60074 -29.41340 -29.08553 -27.47608 -26.59723 -25.50088 -25.19542 -24.76120 -22.12422 -20.70790 -19.26709 -18.45071 -17.25029 -16.87897 -16.46407 -16.35203 -15.89127 -15.57633 -15.33585 -14.73562 -14.44052 -13.85745 -13.64102 -13.59451 -13.28989 -13.09076 -12.73529 -12.65747 -12.41135 -12.05608 -11.95268 -11.81867 -11.77119 -11.60260 -11.50958 -11.38432 -11.22469 -11.16312 -10.97646 -10.89928 -10.72620 -10.57677 -10.49413 -10.45722 -10.23018 -10.08834 -9.73125 -9.32626 -8.63195 -8.50647 -7.96059 -6.11789 -4.20330 1.19368 3.21763 3.28399 3.28908 3.46303 3.64812 4.12566 4.32243 4.52610 4.61235 4.85086 5.00528 5.13547 5.18357 5.19649 5.27544 5.36241 5.40581 5.50499 5.52124 5.59188 5.62533 5.77055 5.77994 5.94520 6.06056 6.12899 6.14844 6.18096 6.19824 6.28827 6.40751 6.47256 6.60299 6.71635 6.87427 6.90595 7.05357 7.11114 7.49219 7.60676 7.76522 8.03360 8.24272 8.82634 9.45739 10.93137 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.010976 B = 0.005789 C = 0.004271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2550.409117 B = 4835.633293 C = 6553.573644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.387 6.387 3 C 0.076 3.924 4 C -0.070 4.070 5 C -0.131 4.131 6 C -0.110 4.110 7 C 0.124 3.876 8 N -1.015 6.015 9 S 2.795 3.205 10 O -0.994 6.994 11 O -0.977 6.977 12 N -0.990 5.990 13 C 0.108 3.892 14 C 0.268 3.732 15 H 0.058 0.942 16 C -0.144 4.144 17 C -0.525 4.525 18 H 0.062 0.938 19 C 0.065 3.935 20 N -0.886 5.886 21 Si 0.896 3.104 22 H -0.277 1.277 23 H -0.287 1.287 24 H -0.278 1.278 25 C 0.132 3.868 26 H 0.083 0.917 27 H 0.040 0.960 28 H 0.040 0.960 29 H 0.053 0.947 30 H 0.056 0.944 31 H 0.055 0.945 32 H 0.057 0.943 33 H 0.064 0.936 34 H 0.075 0.925 35 H 0.080 0.920 36 H 0.065 0.935 37 H 0.062 0.938 38 H 0.042 0.958 39 H 0.079 0.921 40 H 0.048 0.952 41 H 0.032 0.968 42 H 0.012 0.988 43 H 0.092 0.908 44 H 0.264 0.736 45 H 0.082 0.918 46 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.701 -13.491 -1.126 14.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.306 6.306 3 C -0.001 4.001 4 C -0.072 4.072 5 C -0.188 4.188 6 C -0.149 4.149 7 C -0.002 4.002 8 N -0.854 5.854 9 S 2.806 3.194 10 O -0.978 6.978 11 O -0.961 6.961 12 N -0.832 5.832 13 C -0.039 4.039 14 C 0.165 3.835 15 H 0.076 0.924 16 C -0.204 4.204 17 C -0.564 4.564 18 H 0.080 0.920 19 C -0.138 4.138 20 N -0.525 5.525 21 Si 0.724 3.276 22 H -0.203 1.203 23 H -0.213 1.213 24 H -0.203 1.203 25 C 0.006 3.994 26 H 0.101 0.899 27 H 0.059 0.941 28 H 0.058 0.942 29 H 0.072 0.928 30 H 0.074 0.926 31 H 0.075 0.925 32 H 0.076 0.924 33 H 0.083 0.917 34 H 0.094 0.906 35 H 0.099 0.901 36 H 0.083 0.917 37 H 0.080 0.920 38 H 0.061 0.939 39 H 0.097 0.903 40 H 0.067 0.933 41 H 0.051 0.949 42 H 0.031 0.969 43 H 0.111 0.889 44 H 0.074 0.926 45 H 0.100 0.900 46 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -3.900 -13.480 -1.880 14.158 hybrid contribution -1.319 0.555 1.144 1.832 sum -5.218 -12.925 -0.736 13.958 Atomic orbital electron populations 1.22716 0.81325 1.02425 1.00020 1.87847 1.19296 1.28000 1.95441 1.22455 0.92362 0.84485 1.00816 1.21736 0.92742 0.96069 0.96674 1.21673 1.01150 1.00123 0.95892 1.22631 0.94929 1.00438 0.96852 1.21631 0.97775 0.85466 0.95338 1.59105 1.26053 1.36086 1.64140 1.01453 0.72163 0.72090 0.73733 1.93530 1.48541 1.68983 1.86775 1.93570 1.86150 1.71787 1.44594 1.57817 1.67329 1.30206 1.27895 1.21172 0.96457 0.98973 0.87274 1.18719 0.89740 0.76887 0.98182 0.92433 1.22052 0.97495 1.03024 0.97850 1.21333 1.15065 1.03400 1.16640 0.92009 1.24917 0.97414 0.95628 0.95821 1.69874 1.39477 1.07706 1.35396 0.86611 0.81949 0.77292 0.81794 1.20297 1.21251 1.20327 1.21932 0.83051 0.95251 0.99162 0.89878 0.94116 0.94181 0.92829 0.92570 0.92549 0.92404 0.91736 0.90635 0.90105 0.91686 0.91970 0.93910 0.90254 0.93314 0.94886 0.96907 0.88905 0.92582 0.89982 0.90438 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 11.01 101.05 1.11 1.39 16 2 O -0.39 -4.43 9.91 -35.23 -0.35 -4.78 16 3 C 0.08 0.88 4.88 37.16 0.18 1.06 16 4 C -0.07 -0.89 0.74 -152.36 -0.11 -1.00 16 5 C -0.13 -1.57 8.44 37.15 0.31 -1.26 16 6 C -0.11 -1.31 5.75 -24.87 -0.14 -1.46 16 7 C 0.12 1.71 6.62 -3.04 -0.02 1.69 16 8 N -1.02 -17.11 3.74 -111.39 -0.42 -17.52 16 9 S 2.79 56.65 6.30 -107.50 -0.68 55.98 16 10 O -0.99 -20.94 16.79 -57.17 -0.96 -21.90 16 11 O -0.98 -22.60 16.02 -57.17 -0.92 -23.52 16 12 N -0.99 -20.84 3.12 -115.85 -0.36 -21.21 16 13 C 0.11 1.95 9.28 59.85 0.56 2.51 16 14 C 0.27 6.51 2.62 -69.08 -0.18 6.33 16 15 H 0.06 1.55 6.91 -51.93 -0.36 1.19 16 16 C -0.14 -3.46 8.97 37.15 0.33 -3.12 16 17 C -0.52 -13.23 7.99 -34.44 -0.28 -13.50 16 18 H 0.06 1.52 7.33 -52.48 -0.38 1.13 16 19 C 0.06 1.68 5.30 -17.82 -0.09 1.58 16 20 N -0.89 -23.99 11.32 55.43 0.63 -23.36 16 21 Si 0.90 20.02 29.54 -169.99 -5.02 15.00 16 22 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 23 H -0.29 -6.44 7.11 56.52 0.40 -6.04 16 24 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 25 C 0.13 2.06 6.04 -2.52 -0.02 2.04 16 26 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.04 0.33 8.14 -51.93 -0.42 -0.09 16 28 H 0.04 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 32 H 0.06 0.73 7.84 -51.93 -0.41 0.32 16 33 H 0.06 0.72 7.74 -51.93 -0.40 0.32 16 34 H 0.07 0.89 8.03 -51.93 -0.42 0.47 16 35 H 0.08 0.86 8.04 -51.93 -0.42 0.45 16 36 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.06 0.82 8.14 -51.92 -0.42 0.40 16 38 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.08 1.45 7.02 -51.93 -0.36 1.09 16 40 H 0.05 0.77 7.79 -51.93 -0.40 0.37 16 41 H 0.03 0.74 7.67 -51.93 -0.40 0.34 16 42 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 43 H 0.09 2.40 6.07 -51.93 -0.32 2.08 16 44 H 0.26 6.85 8.31 -40.82 -0.34 6.51 16 45 H 0.08 1.32 7.69 -51.93 -0.40 0.92 16 46 H 0.08 1.27 8.03 -51.93 -0.42 0.85 16 LS Contribution 375.63 15.07 5.66 5.66 Total: -1.00 -30.48 375.63 -8.81 -39.29 By element: Atomic # 1 Polarization: 8.13 SS G_CDS: -8.05 Total: 0.08 kcal Atomic # 6 Polarization: -5.39 SS G_CDS: 1.65 Total: -3.74 kcal Atomic # 7 Polarization: -61.94 SS G_CDS: -0.15 Total: -62.09 kcal Atomic # 8 Polarization: -47.96 SS G_CDS: -2.23 Total: -50.19 kcal Atomic # 14 Polarization: 20.02 SS G_CDS: -5.02 Total: 15.00 kcal Atomic # 16 Polarization: 56.65 SS G_CDS: -0.68 Total: 55.98 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -30.48 -8.81 -39.29 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001413348946.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.541 kcal (2) G-P(sol) polarization free energy of solvation -30.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.290 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds