Wall clock time and date at job start Tue Mar 31 2020 13:38:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 N 1.46500 * 109.46906 * 2 1 4 4 C 1.46506 * 120.00314 * 84.99970 * 3 2 1 5 5 C 1.50698 * 109.47006 * 84.99618 * 4 3 2 6 6 H 1.08005 * 119.99819 * 0.02562 * 5 4 3 7 7 C 1.37875 * 120.00046 * 179.97438 * 5 4 3 8 8 N 1.31511 * 120.00192 * 0.02562 * 7 5 4 9 9 Si 1.86798 * 119.99979 * 180.02562 * 7 5 4 10 10 H 1.48506 * 109.47297 * 180.02562 * 9 7 5 11 11 H 1.48503 * 109.47261 * 60.00310 * 9 7 5 12 12 H 1.48500 * 109.47454 * 300.00304 * 9 7 5 13 13 S 1.65600 * 119.99850 * 265.00244 * 3 2 1 14 14 O 1.42096 * 106.40501 * 23.53708 * 13 3 2 15 15 O 1.42105 * 106.40368 * 156.46328 * 13 3 2 16 16 N 1.65601 * 107.21674 * 269.99886 * 13 3 2 17 17 C 1.46924 * 120.63132 * 90.00170 * 16 13 3 18 18 C 1.53193 * 108.77857 * 126.37031 * 17 16 13 19 19 C 1.53035 * 109.31288 * 54.63321 * 18 17 16 20 20 H 1.09000 * 109.46071 * 58.65313 * 19 18 17 21 21 O 1.42902 * 109.46206 * 178.61844 * 19 18 17 22 22 C 1.42904 * 113.99703 * 270.00135 * 21 19 18 23 23 C 1.53049 * 109.53976 * 298.63780 * 19 18 17 24 24 H 1.09001 * 109.49718 * 181.34645 * 23 19 18 25 25 C 1.52996 * 109.49571 * 301.41511 * 23 19 18 26 26 C 1.46927 * 120.63287 * 269.72187 * 16 13 3 27 27 H 1.08999 * 109.46890 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47005 * 299.99934 * 1 2 3 29 29 H 1.08989 * 109.47254 * 60.00132 * 1 2 3 30 30 H 1.08992 * 109.47220 * 240.00064 * 2 1 3 31 31 H 1.09003 * 109.47380 * 119.99638 * 2 1 3 32 32 H 1.09001 * 109.47068 * 325.00283 * 4 3 2 33 33 H 1.08993 * 109.47068 * 204.99737 * 4 3 2 34 34 H 0.97001 * 119.99934 * 359.97438 * 8 7 5 35 35 H 1.09007 * 109.58430 * 246.15933 * 17 16 13 36 36 H 1.08998 * 109.58775 * 6.57888 * 17 16 13 37 37 H 1.09000 * 109.50031 * 174.58761 * 18 17 16 38 38 H 1.08999 * 109.49502 * 294.65187 * 18 17 16 39 39 H 1.09002 * 109.46865 * 59.99856 * 22 21 19 40 40 H 1.08997 * 109.46828 * 179.97438 * 22 21 19 41 41 H 1.09000 * 109.46941 * 299.99899 * 22 21 19 42 42 H 1.08997 * 109.47580 * 60.00026 * 25 23 19 43 43 H 1.08999 * 109.46836 * 180.02562 * 25 23 19 44 44 H 1.09008 * 109.46856 * 299.99938 * 25 23 19 45 45 H 1.09011 * 109.58529 * 353.41846 * 26 16 13 46 46 H 1.08997 * 109.58879 * 113.83832 * 26 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1583 2.1088 1.2639 5 6 3.4948 1.7889 1.8823 6 1 4.1724 1.1117 1.3836 7 6 3.8530 2.3615 3.0843 8 7 3.0281 3.1865 3.6914 9 14 5.5099 1.9656 3.8505 10 1 5.6518 2.7029 5.1318 11 1 6.5948 2.3728 2.9218 12 1 5.6004 0.5058 4.1075 13 16 2.4121 2.1202 -1.4287 14 8 1.6869 1.4415 -2.4448 15 8 2.3057 3.5187 -1.1999 16 7 4.0144 1.8138 -1.7138 17 6 4.4257 0.6246 -2.4723 18 6 5.3288 1.0653 -3.6286 19 6 6.4923 1.8915 -3.0755 20 1 7.0524 1.2939 -2.3564 21 8 7.3544 2.2772 -4.1479 22 6 8.4011 1.3422 -4.4172 23 6 5.9477 3.1434 -2.3837 24 1 6.7780 3.7433 -2.0110 25 6 5.1321 3.9654 -3.3836 26 6 5.0514 2.7291 -1.2182 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 1.8934 -0.5138 -0.8899 31 1 1.8935 -0.5138 0.8900 32 1 1.3618 1.8098 1.9453 33 1 2.0922 3.1803 1.0755 34 1 2.1678 3.3924 3.2934 35 1 4.9737 -0.0542 -1.8188 36 1 3.5440 0.1211 -2.8688 37 1 5.7185 0.1860 -4.1414 38 1 4.7534 1.6701 -4.3295 39 1 7.9674 0.3783 -4.6838 40 1 9.0105 1.7072 -5.2438 41 1 9.0232 1.2277 -3.5295 42 1 4.3013 3.3655 -3.7551 43 1 4.7449 4.8570 -2.8905 44 1 5.7694 4.2595 -4.2176 45 1 4.5823 3.6138 -0.7874 46 1 5.6514 2.2255 -0.4603 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001413370306.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:38:19 Heat of formation + Delta-G solvation = -131.185390 kcal Electronic energy + Delta-G solvation = -27911.231489 eV Core-core repulsion = 24155.496610 eV Total energy + Delta-G solvation = -3755.734878 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.160 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -39.52664 -36.82216 -36.75290 -36.17780 -35.28426 -32.96156 -32.59648 -31.13799 -29.90542 -27.04296 -26.53020 -26.16667 -23.67343 -23.18299 -22.86420 -21.82282 -19.46621 -18.41634 -17.51989 -17.17064 -16.57738 -16.39078 -15.81865 -15.23816 -15.23192 -14.86544 -14.71995 -13.99150 -13.79572 -13.53213 -13.49499 -13.18370 -12.93377 -12.67947 -12.65488 -12.44319 -11.97802 -11.92244 -11.80070 -11.66912 -11.50804 -11.44584 -11.26825 -11.12709 -11.04335 -11.02556 -11.01578 -10.57838 -10.56002 -10.34765 -10.25012 -10.14209 -9.51651 -9.42555 -8.72956 -8.46134 -7.96944 -6.45879 -4.20336 1.17243 3.34509 3.36213 3.37897 3.55731 3.68823 4.01316 4.44271 4.69874 4.70041 4.88348 5.01572 5.16808 5.19710 5.23351 5.27102 5.30397 5.34631 5.36340 5.48317 5.54676 5.63026 5.67042 5.72142 5.72815 5.85847 5.95021 5.98616 6.05662 6.11851 6.20638 6.24467 6.29383 6.46750 6.49951 6.54576 6.58233 6.86681 7.02060 7.14488 7.23004 7.48634 7.94796 8.35591 8.71661 9.51290 10.91379 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.011551 B = 0.006086 C = 0.004665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2423.444638 B = 4599.899137 C = 6000.368981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.131 3.869 3 N -0.989 5.989 4 C 0.236 3.764 5 C -0.616 4.616 6 H 0.056 0.944 7 C 0.023 3.977 8 N -0.905 5.905 9 Si 1.066 2.934 10 H -0.282 1.282 11 H -0.287 1.287 12 H -0.289 1.289 13 S 2.785 3.215 14 O -0.997 6.997 15 O -0.977 6.977 16 N -1.001 6.001 17 C 0.124 3.876 18 C -0.153 4.153 19 C 0.097 3.903 20 H 0.063 0.937 21 O -0.383 6.383 22 C 0.031 3.969 23 C -0.099 4.099 24 H 0.086 0.914 25 C -0.144 4.144 26 C 0.133 3.867 27 H 0.059 0.941 28 H 0.059 0.941 29 H 0.055 0.945 30 H 0.062 0.938 31 H 0.079 0.921 32 H 0.027 0.973 33 H 0.039 0.961 34 H 0.270 0.730 35 H 0.066 0.934 36 H 0.090 0.910 37 H 0.070 0.930 38 H 0.079 0.921 39 H 0.039 0.961 40 H 0.082 0.918 41 H 0.040 0.960 42 H 0.052 0.948 43 H 0.059 0.941 44 H 0.060 0.940 45 H 0.102 0.898 46 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.280 -6.260 -12.696 15.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.004 3.996 3 N -0.829 5.829 4 C 0.113 3.887 5 C -0.656 4.656 6 H 0.075 0.925 7 C -0.183 4.183 8 N -0.541 5.541 9 Si 0.894 3.106 10 H -0.207 1.207 11 H -0.213 1.213 12 H -0.215 1.215 13 S 2.795 3.205 14 O -0.981 6.981 15 O -0.961 6.961 16 N -0.839 5.839 17 C -0.002 4.002 18 C -0.192 4.192 19 C 0.039 3.961 20 H 0.081 0.919 21 O -0.302 6.302 22 C -0.066 4.066 23 C -0.119 4.119 24 H 0.105 0.895 25 C -0.201 4.201 26 C 0.007 3.993 27 H 0.078 0.922 28 H 0.078 0.922 29 H 0.074 0.926 30 H 0.081 0.919 31 H 0.098 0.902 32 H 0.044 0.956 33 H 0.057 0.943 34 H 0.081 0.919 35 H 0.085 0.915 36 H 0.108 0.892 37 H 0.089 0.911 38 H 0.097 0.903 39 H 0.057 0.943 40 H 0.100 0.900 41 H 0.058 0.942 42 H 0.071 0.929 43 H 0.078 0.922 44 H 0.079 0.921 45 H 0.120 0.880 46 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 6.613 -5.255 -12.009 14.682 hybrid contribution -0.560 -0.995 -0.877 1.440 sum 6.053 -6.250 -12.886 15.548 Atomic orbital electron populations 1.22210 0.96896 1.01512 1.02309 1.20973 0.93639 0.82874 1.02115 1.57654 1.78549 1.22874 1.23846 1.19236 0.97708 0.91787 0.79978 1.22326 1.02586 1.31522 1.09141 0.92527 1.25745 1.04312 0.93809 0.94400 1.70786 1.09904 1.32653 1.40742 0.83589 0.74560 0.75970 0.76506 1.20703 1.21292 1.21540 1.01748 0.72585 0.73384 0.72768 1.93524 1.70536 1.76499 1.57544 1.93560 1.85730 1.30788 1.85985 1.58109 1.24998 1.33317 1.67524 1.21286 0.99482 0.87092 0.92347 1.22394 0.97653 1.00389 0.98793 1.22099 0.90131 0.95733 0.88132 0.91922 1.87920 1.42269 1.46303 1.53719 1.22753 0.90118 0.93107 1.00596 1.21498 0.98518 0.95755 0.96162 0.89538 1.21794 0.99638 0.99680 0.98967 1.21331 0.89688 0.93848 0.94412 0.92174 0.92231 0.92622 0.91944 0.90232 0.95550 0.94284 0.91944 0.91546 0.89162 0.91110 0.90271 0.94272 0.89986 0.94154 0.92940 0.92221 0.92114 0.88001 0.90802 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.69 10.24 37.16 0.38 -2.31 16 2 C 0.13 2.27 6.06 -4.04 -0.02 2.24 16 3 N -0.99 -20.29 2.82 -115.66 -0.33 -20.61 16 4 C 0.24 5.71 4.75 -5.19 -0.02 5.68 16 5 C -0.62 -15.76 9.38 -34.44 -0.32 -16.08 16 6 H 0.06 1.41 7.81 -52.48 -0.41 1.00 16 7 C 0.02 0.61 5.46 -17.82 -0.10 0.52 16 8 N -0.91 -26.14 13.65 55.43 0.76 -25.38 16 9 Si 1.07 23.67 29.90 -169.99 -5.08 18.59 16 10 H -0.28 -6.39 7.11 56.52 0.40 -5.98 16 11 H -0.29 -5.99 7.11 56.52 0.40 -5.59 16 12 H -0.29 -6.14 7.11 56.52 0.40 -5.74 16 13 S 2.79 55.69 6.10 -107.50 -0.66 55.03 16 14 O -1.00 -20.21 15.70 -57.17 -0.90 -21.10 16 15 O -0.98 -22.49 15.27 -57.17 -0.87 -23.36 16 16 N -1.00 -16.81 2.79 -113.76 -0.32 -17.12 16 17 C 0.12 1.69 6.48 -3.71 -0.02 1.66 16 18 C -0.15 -1.87 5.35 -26.61 -0.14 -2.01 16 19 C 0.10 1.21 2.25 -26.69 -0.06 1.15 16 20 H 0.06 0.73 7.78 -51.93 -0.40 0.33 16 21 O -0.38 -4.74 9.74 -35.23 -0.34 -5.09 16 22 C 0.03 0.28 10.82 101.05 1.09 1.37 16 23 C -0.10 -1.39 2.94 -90.72 -0.27 -1.66 16 24 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 25 C -0.14 -2.08 8.56 37.16 0.32 -1.76 16 26 C 0.13 2.20 5.83 -3.93 -0.02 2.17 16 27 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 28 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 29 H 0.05 0.91 8.14 -51.94 -0.42 0.49 16 30 H 0.06 0.96 7.61 -51.93 -0.40 0.56 16 31 H 0.08 1.39 8.11 -51.93 -0.42 0.97 16 32 H 0.03 0.66 7.98 -51.93 -0.41 0.25 16 33 H 0.04 1.03 6.78 -51.93 -0.35 0.68 16 34 H 0.27 7.80 7.22 -40.82 -0.29 7.51 16 35 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.09 1.21 6.92 -51.93 -0.36 0.85 16 37 H 0.07 0.72 7.85 -51.93 -0.41 0.31 16 38 H 0.08 1.05 6.34 -51.93 -0.33 0.72 16 39 H 0.04 0.31 7.85 -51.93 -0.41 -0.09 16 40 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.04 0.34 8.08 -51.93 -0.42 -0.08 16 42 H 0.05 0.80 5.97 -51.93 -0.31 0.49 16 43 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 44 H 0.06 0.81 7.72 -51.92 -0.40 0.41 16 45 H 0.10 1.91 6.91 -51.92 -0.36 1.55 16 46 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 LS Contribution 371.48 15.07 5.60 5.60 Total: -1.00 -31.22 371.48 -9.20 -40.42 By element: Atomic # 1 Polarization: 9.91 SS G_CDS: -7.86 Total: 2.05 kcal Atomic # 6 Polarization: -9.82 SS G_CDS: 0.81 Total: -9.01 kcal Atomic # 7 Polarization: -63.23 SS G_CDS: 0.11 Total: -63.12 kcal Atomic # 8 Polarization: -47.44 SS G_CDS: -2.11 Total: -49.55 kcal Atomic # 14 Polarization: 23.67 SS G_CDS: -5.08 Total: 18.59 kcal Atomic # 16 Polarization: 55.69 SS G_CDS: -0.66 Total: 55.03 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -31.22 -9.20 -40.42 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001413370306.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.767 kcal (2) G-P(sol) polarization free energy of solvation -31.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.418 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds