Wall clock time and date at job start Tue Mar 31 2020 13:38:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46506 * 109.46691 * 2 1 4 4 C 1.46498 * 120.00239 * 274.72301 * 3 2 1 5 5 C 1.50703 * 109.46964 * 84.99935 * 4 3 2 6 6 H 1.08004 * 119.99711 * 0.02562 * 5 4 3 7 7 C 1.37871 * 119.99968 * 180.02562 * 5 4 3 8 8 N 1.31509 * 120.00248 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 119.99858 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.47202 * 90.00156 * 9 7 5 11 11 H 1.48504 * 109.47181 * 210.00108 * 9 7 5 12 12 H 1.48494 * 109.47343 * 329.99789 * 9 7 5 13 13 S 1.65597 * 119.99791 * 95.00526 * 3 2 1 14 14 O 1.42101 * 106.40154 * 203.53789 * 13 3 2 15 15 O 1.42106 * 106.40098 * 336.45446 * 13 3 2 16 16 N 1.65596 * 107.22389 * 89.99756 * 13 3 2 17 17 C 1.46921 * 120.63121 * 89.99272 * 16 13 3 18 18 C 1.53194 * 108.77229 * 126.37290 * 17 16 13 19 19 C 1.53044 * 109.31222 * 54.63714 * 18 17 16 20 20 H 1.09000 * 109.45785 * 58.65484 * 19 18 17 21 21 O 1.42901 * 109.46062 * 178.62665 * 19 18 17 22 22 C 1.42910 * 114.00095 * 270.00358 * 21 19 18 23 23 C 1.53037 * 109.53738 * 298.63451 * 19 18 17 24 24 H 1.08994 * 109.49671 * 301.41309 * 23 19 18 25 25 C 1.53004 * 109.49411 * 181.34747 * 23 19 18 26 26 C 1.46924 * 120.62935 * 269.72140 * 16 13 3 27 27 H 1.09002 * 109.46832 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47659 * 299.99430 * 1 2 3 29 29 H 1.08995 * 109.47574 * 60.00208 * 1 2 3 30 30 H 1.08999 * 109.46983 * 240.00261 * 2 1 3 31 31 H 1.08998 * 109.47326 * 120.00250 * 2 1 3 32 32 H 1.08990 * 109.47572 * 205.00129 * 4 3 2 33 33 H 1.09003 * 109.47280 * 325.00485 * 4 3 2 34 34 H 0.97000 * 120.00205 * 179.97438 * 8 7 5 35 35 H 1.08999 * 109.59080 * 246.16383 * 17 16 13 36 36 H 1.09003 * 109.58661 * 6.44893 * 17 16 13 37 37 H 1.09000 * 109.49837 * 174.58663 * 18 17 16 38 38 H 1.08999 * 109.50037 * 294.68491 * 18 17 16 39 39 H 1.08994 * 109.47153 * 180.02562 * 22 21 19 40 40 H 1.09000 * 109.46500 * 299.99821 * 22 21 19 41 41 H 1.09001 * 109.46797 * 59.99887 * 22 21 19 42 42 H 1.08994 * 109.47083 * 60.00391 * 25 23 19 43 43 H 1.09000 * 109.46434 * 179.97438 * 25 23 19 44 44 H 1.09003 * 109.47105 * 299.99929 * 25 23 19 45 45 H 1.09001 * 109.58823 * 353.41695 * 26 16 13 46 46 H 1.09005 * 109.58855 * 113.83810 * 26 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.1639 2.1068 -1.2644 5 6 0.8432 2.7262 -1.6431 6 1 -0.0182 2.5931 -1.0054 7 6 0.7348 3.4628 -2.8035 8 7 1.7837 3.6244 -3.5802 9 14 -0.9020 4.2312 -3.2725 10 1 -0.9928 5.5951 -2.6924 11 1 -1.0039 4.3146 -4.7517 12 1 -2.0104 3.3947 -2.7465 13 16 2.4121 2.1202 1.4287 14 8 2.3055 3.5186 1.1999 15 8 1.6868 1.4414 2.4448 16 7 4.0143 1.8138 1.7137 17 6 5.0515 2.7259 1.2128 18 6 5.9478 3.1435 2.3830 19 6 6.4923 1.8918 3.0752 20 1 7.0524 1.2939 2.3562 21 8 7.3544 2.2778 4.1475 22 6 8.7240 2.4268 3.7675 23 6 5.3289 1.0660 3.6287 24 1 4.7538 1.6715 4.3291 25 6 5.8759 -0.1677 4.3496 26 6 4.4253 0.6279 2.4775 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5137 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8899 32 1 2.9130 2.8901 -1.1497 33 1 2.4781 1.4151 -2.0461 34 1 1.7073 4.1423 -4.3968 35 1 5.6505 2.2182 0.4568 36 1 4.5828 3.6077 0.7761 37 1 6.7780 3.7429 2.0094 38 1 5.3668 3.7294 3.0951 39 1 9.3123 2.7204 4.6368 40 1 9.0982 1.4797 3.3790 41 1 8.8059 3.1935 2.9971 42 1 6.5204 0.1471 5.1703 43 1 5.0469 -0.7553 4.7440 44 1 6.4500 -0.7735 3.6485 45 1 3.5436 0.1270 2.8771 46 1 4.9722 -0.0544 1.8267 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001413370313.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:38:25 Heat of formation + Delta-G solvation = -128.819850 kcal Electronic energy + Delta-G solvation = -27294.238539 eV Core-core repulsion = 23538.606239 eV Total energy + Delta-G solvation = -3755.632301 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.160 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -39.50913 -36.79695 -36.69375 -36.03337 -35.14280 -33.15936 -32.59286 -31.27363 -29.81258 -27.19512 -26.74081 -26.50256 -23.78963 -22.80991 -22.23483 -21.82292 -20.33372 -18.49731 -17.36060 -16.86533 -16.66822 -16.27780 -15.89435 -15.50113 -15.13010 -14.95398 -14.29923 -14.21948 -13.76293 -13.65636 -13.39478 -13.09380 -13.05412 -12.73188 -12.50274 -12.23478 -12.19712 -11.96596 -11.84117 -11.62523 -11.47745 -11.46134 -11.25299 -11.09320 -11.05931 -10.99129 -10.97164 -10.78903 -10.50583 -10.46181 -10.35286 -9.90109 -9.62368 -9.59499 -8.91535 -8.43030 -8.07478 -6.06012 -4.08902 1.16945 3.32747 3.38800 3.40216 3.43123 3.61617 4.05909 4.44943 4.53901 4.65058 4.83559 4.92573 5.06793 5.13637 5.17538 5.18093 5.28230 5.29162 5.34723 5.42122 5.43900 5.49420 5.57998 5.63585 5.76665 5.80681 5.86432 5.88949 5.96469 6.04455 6.10556 6.15156 6.23649 6.31388 6.41973 6.64983 6.79450 6.99156 7.06381 7.22556 7.41775 7.63671 7.92076 8.21825 8.93231 9.55909 11.02706 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.020386 B = 0.004074 C = 0.003667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1373.184742 B = 6871.399410 C = 7633.988608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.136 3.864 3 N -0.993 5.993 4 C 0.258 3.742 5 C -0.524 4.524 6 H 0.063 0.937 7 C 0.062 3.938 8 N -0.897 5.897 9 Si 0.894 3.106 10 H -0.279 1.279 11 H -0.286 1.286 12 H -0.273 1.273 13 S 2.777 3.223 14 O -0.962 6.962 15 O -0.993 6.993 16 N -1.013 6.013 17 C 0.122 3.878 18 C -0.153 4.153 19 C 0.097 3.903 20 H 0.062 0.938 21 O -0.383 6.383 22 C 0.031 3.969 23 C -0.101 4.101 24 H 0.083 0.917 25 C -0.142 4.142 26 C 0.127 3.873 27 H 0.050 0.950 28 H 0.052 0.948 29 H 0.078 0.922 30 H 0.070 0.930 31 H 0.058 0.942 32 H 0.035 0.965 33 H 0.034 0.966 34 H 0.263 0.737 35 H 0.067 0.933 36 H 0.100 0.900 37 H 0.075 0.925 38 H 0.076 0.924 39 H 0.082 0.918 40 H 0.039 0.961 41 H 0.041 0.959 42 H 0.065 0.935 43 H 0.058 0.942 44 H 0.053 0.947 45 H 0.096 0.904 46 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.140 -7.863 11.407 18.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.009 3.991 3 N -0.835 5.835 4 C 0.136 3.864 5 C -0.564 4.564 6 H 0.081 0.919 7 C -0.140 4.140 8 N -0.536 5.536 9 Si 0.722 3.278 10 H -0.205 1.205 11 H -0.212 1.212 12 H -0.198 1.198 13 S 2.787 3.213 14 O -0.945 6.945 15 O -0.977 6.977 16 N -0.851 5.851 17 C -0.003 4.003 18 C -0.192 4.192 19 C 0.039 3.961 20 H 0.080 0.920 21 O -0.302 6.302 22 C -0.065 4.065 23 C -0.121 4.121 24 H 0.101 0.899 25 C -0.200 4.200 26 C 0.001 3.999 27 H 0.069 0.931 28 H 0.072 0.928 29 H 0.097 0.903 30 H 0.089 0.911 31 H 0.077 0.923 32 H 0.053 0.947 33 H 0.052 0.948 34 H 0.072 0.928 35 H 0.085 0.915 36 H 0.119 0.881 37 H 0.093 0.907 38 H 0.095 0.905 39 H 0.101 0.899 40 H 0.058 0.942 41 H 0.059 0.941 42 H 0.084 0.916 43 H 0.077 0.923 44 H 0.072 0.928 45 H 0.114 0.886 46 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 11.542 -7.238 11.944 18.118 hybrid contribution -0.393 0.317 -0.953 1.079 sum 11.149 -6.921 10.990 17.117 Atomic orbital electron populations 1.22257 0.96350 1.00838 1.03682 1.20943 0.94850 0.82314 1.00954 1.57844 1.78184 1.23069 1.24375 1.19034 0.97459 0.90893 0.78967 1.21526 0.96310 1.31864 1.06687 0.91929 1.24918 0.96815 0.96016 0.96242 1.69912 1.29162 1.40778 1.13753 0.86557 0.83922 0.79983 0.77354 1.20461 1.21211 1.19796 1.02132 0.72473 0.73705 0.73005 1.93613 1.85053 1.30221 1.85641 1.93520 1.70050 1.76450 1.57693 1.58511 1.25406 1.33778 1.67434 1.21355 0.89930 0.93842 0.95212 1.22386 0.99991 0.98253 0.98597 1.22119 0.90808 0.94672 0.88468 0.91967 1.87906 1.17695 1.89700 1.34910 1.22759 0.82935 0.99860 1.00994 1.21471 0.95603 0.97231 0.97796 0.89883 1.21713 1.01140 0.96557 1.00574 1.21340 0.99531 0.87017 0.92054 0.93079 0.92848 0.90281 0.91127 0.92329 0.94690 0.94808 0.92763 0.91465 0.88130 0.90691 0.90536 0.89905 0.94216 0.94055 0.91637 0.92269 0.92833 0.88615 0.91563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.05 9.84 37.16 0.37 -2.69 16 2 C 0.14 2.35 6.09 -4.04 -0.02 2.32 16 3 N -0.99 -20.33 2.85 -115.66 -0.33 -20.66 16 4 C 0.26 6.32 5.13 -5.19 -0.03 6.29 16 5 C -0.52 -14.41 8.43 -34.44 -0.29 -14.70 16 6 H 0.06 1.73 6.89 -52.48 -0.36 1.37 16 7 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 8 N -0.90 -25.77 13.29 55.43 0.74 -25.04 16 9 Si 0.89 21.70 29.54 -169.99 -5.02 16.68 16 10 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 11 H -0.29 -6.80 7.11 56.52 0.40 -6.39 16 12 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 13 S 2.78 55.53 6.05 -107.50 -0.65 54.88 16 14 O -0.96 -22.99 15.70 -57.17 -0.90 -23.89 16 15 O -0.99 -20.56 15.69 -57.17 -0.90 -21.45 16 16 N -1.01 -15.63 3.35 -113.77 -0.38 -16.01 16 17 C 0.12 1.73 6.48 -3.71 -0.02 1.70 16 18 C -0.15 -1.87 5.70 -26.61 -0.15 -2.02 16 19 C 0.10 1.08 2.02 -26.69 -0.05 1.03 16 20 H 0.06 0.62 7.79 -51.93 -0.40 0.22 16 21 O -0.38 -4.31 9.62 -35.23 -0.34 -4.65 16 22 C 0.03 0.25 10.82 101.05 1.09 1.35 16 23 C -0.10 -1.16 2.61 -90.72 -0.24 -1.40 16 24 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 25 C -0.14 -1.32 9.04 37.16 0.34 -0.98 16 26 C 0.13 1.58 5.73 -3.94 -0.02 1.56 16 27 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 29 H 0.08 1.57 6.59 -51.93 -0.34 1.23 16 30 H 0.07 1.13 8.00 -51.93 -0.42 0.71 16 31 H 0.06 0.87 7.61 -51.93 -0.40 0.47 16 32 H 0.04 0.91 7.61 -51.93 -0.40 0.51 16 33 H 0.03 0.84 8.00 -51.93 -0.42 0.43 16 34 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 35 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.10 1.62 6.92 -51.93 -0.36 1.26 16 37 H 0.07 0.79 7.85 -51.93 -0.41 0.38 16 38 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 39 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.04 0.28 8.08 -51.93 -0.42 -0.14 16 41 H 0.04 0.31 7.85 -51.93 -0.41 -0.09 16 42 H 0.06 0.62 7.65 -51.93 -0.40 0.22 16 43 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 44 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 45 H 0.10 1.22 6.91 -51.93 -0.36 0.86 16 46 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 LS Contribution 374.07 15.07 5.64 5.64 Total: -1.00 -32.70 374.07 -9.29 -41.99 By element: Atomic # 1 Polarization: 6.44 SS G_CDS: -8.02 Total: -1.58 kcal Atomic # 6 Polarization: -6.77 SS G_CDS: 0.87 Total: -5.90 kcal Atomic # 7 Polarization: -61.74 SS G_CDS: 0.02 Total: -61.71 kcal Atomic # 8 Polarization: -47.86 SS G_CDS: -2.13 Total: -49.99 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Atomic # 16 Polarization: 55.53 SS G_CDS: -0.65 Total: 54.88 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -32.70 -9.29 -41.99 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001413370313.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.831 kcal (2) G-P(sol) polarization free energy of solvation -32.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.989 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds