Wall clock time and date at job start Tue Mar 31 2020 13:37:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46498 * 109.47148 * 2 1 4 4 C 1.46506 * 119.99596 * 269.99796 * 3 2 1 5 5 C 1.50694 * 109.46917 * 269.99948 * 4 3 2 6 6 H 1.08000 * 120.00317 * 0.02562 * 5 4 3 7 7 C 1.37878 * 119.99904 * 180.02562 * 5 4 3 8 8 N 1.31515 * 119.99826 * 180.02562 * 7 5 4 9 9 Si 1.86797 * 120.00041 * 0.02562 * 7 5 4 10 10 H 1.48498 * 109.47342 * 89.99980 * 9 7 5 11 11 H 1.48502 * 109.47298 * 210.00441 * 9 7 5 12 12 H 1.48510 * 109.47030 * 329.99712 * 9 7 5 13 13 C 1.34775 * 120.00138 * 89.99576 * 3 2 1 14 14 O 1.21585 * 119.99811 * 179.97438 * 13 3 2 15 15 N 1.34771 * 119.99877 * 0.27872 * 13 3 2 16 16 C 1.40156 * 120.00060 * 176.17462 * 15 13 3 17 17 C 1.39378 * 120.40837 * 35.26599 * 16 15 13 18 18 C 1.38303 * 118.43188 * 179.97438 * 17 16 15 19 19 C 1.39023 * 119.17719 * 359.97438 * 18 17 16 20 20 N 1.39577 * 119.62180 * 179.97438 * 19 18 17 21 21 C 1.46490 * 120.00021 * 233.62474 * 20 19 18 22 22 C 1.34778 * 119.99989 * 53.62675 * 20 19 18 23 23 C 1.50697 * 120.00099 * 176.39604 * 22 20 19 24 24 O 1.21287 * 119.99629 * 356.39976 * 22 20 19 25 25 N 1.32312 * 120.75690 * 359.97438 * 19 18 17 26 26 C 1.31917 * 121.70402 * 359.72767 * 25 19 18 27 27 H 1.08995 * 109.47566 * 300.00326 * 1 2 3 28 28 H 1.08997 * 109.47014 * 60.00198 * 1 2 3 29 29 H 1.09006 * 109.47166 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.46825 * 239.99379 * 2 1 3 31 31 H 1.08997 * 109.46489 * 119.99836 * 2 1 3 32 32 H 1.08994 * 109.46990 * 29.99793 * 4 3 2 33 33 H 1.08998 * 109.46815 * 149.99686 * 4 3 2 34 34 H 0.97004 * 119.99295 * 180.02562 * 8 7 5 35 35 H 0.97003 * 120.00309 * 356.17571 * 15 13 3 36 36 H 1.08001 * 120.78766 * 359.97438 * 17 16 15 37 37 H 1.08000 * 120.40604 * 180.02562 * 18 17 16 38 38 H 1.09002 * 109.47357 * 96.43917 * 21 20 19 39 39 H 1.09006 * 109.47394 * 216.44073 * 21 20 19 40 40 H 1.09005 * 109.47700 * 336.44137 * 21 20 19 41 41 H 1.09004 * 109.46528 * 84.51313 * 23 22 20 42 42 H 1.09001 * 109.47148 * 204.51051 * 23 22 20 43 43 H 1.08990 * 109.47225 * 324.51201 * 23 22 20 44 44 H 1.07997 * 119.62372 * 180.28907 * 26 25 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0717 -1.2688 5 6 3.6858 1.8349 -1.7038 6 1 4.3426 1.2301 -1.0961 7 6 4.1494 2.3903 -2.8775 8 7 5.3914 2.1831 -3.2573 9 14 3.0136 3.4368 -3.9281 10 1 3.1174 4.8568 -3.5060 11 1 3.4066 3.3145 -5.3550 12 1 1.6136 2.9711 -3.7587 13 6 2.2429 2.0166 1.1672 14 8 2.6486 3.1627 1.1671 15 7 2.0236 1.3794 2.3343 16 6 2.3328 2.0113 3.5466 17 6 2.1573 3.3865 3.6902 18 6 2.4748 3.9675 4.9044 19 6 2.9546 3.1664 5.9343 20 7 3.2785 3.7432 7.1634 21 6 4.6039 3.5255 7.7481 22 6 2.3718 4.5005 7.8122 23 6 2.6917 5.0562 9.1759 24 8 1.2984 4.7347 7.2984 25 7 3.1078 1.8634 5.7628 26 6 2.8096 1.2748 4.6205 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 1.8933 -0.5140 -0.8900 31 1 1.8932 -0.5138 0.8900 32 1 1.5818 1.6875 -2.0284 33 1 2.0955 3.1409 -1.1385 34 1 5.7176 2.5742 -4.0829 35 1 1.6517 0.4835 2.3354 36 1 1.7821 3.9843 2.8727 37 1 2.3508 5.0304 5.0508 38 1 5.2522 4.3666 7.5022 39 1 4.5138 3.4407 8.8311 40 1 5.0320 2.6072 7.3462 41 1 3.2482 5.9872 9.0674 42 1 1.7650 5.2478 9.7168 43 1 3.2934 4.3357 9.7298 44 1 2.9433 0.2079 4.5189 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001413597500.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:37:53 Heat of formation + Delta-G solvation = 1.237229 kcal Electronic energy + Delta-G solvation = -26748.643594 eV Core-core repulsion = 22895.499791 eV Total energy + Delta-G solvation = -3853.143803 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.08917 -40.12309 -38.88843 -36.15704 -35.51737 -34.51370 -32.68805 -32.11771 -30.82028 -30.44016 -28.99184 -27.56363 -26.85283 -23.75590 -23.56650 -23.09037 -22.15083 -20.15745 -19.47589 -18.15549 -17.73916 -17.08805 -16.93820 -16.85942 -16.47098 -15.42132 -15.10557 -15.00335 -14.68479 -14.19108 -13.92476 -13.76454 -13.66993 -13.52479 -13.48585 -13.22092 -12.89933 -12.73166 -12.59694 -12.48662 -12.33486 -12.31469 -11.97579 -11.51424 -11.07357 -10.96277 -10.59736 -10.54004 -10.22342 -10.18601 -10.16719 -9.66287 -9.59427 -9.48224 -8.93921 -8.61232 -8.08733 -7.70613 -6.10966 -4.09987 1.04454 1.35530 2.28372 2.52139 2.97597 3.27753 3.33491 3.35810 3.53770 3.87768 4.20833 4.34466 4.37280 4.51636 4.70618 4.85985 4.94661 4.98671 5.06482 5.11560 5.15521 5.21813 5.28300 5.37919 5.42067 5.52710 5.54517 5.66501 5.69756 5.84199 6.04967 6.14279 6.30492 6.33811 6.47655 6.56104 6.82145 6.90696 6.94828 7.15855 7.38414 7.58161 7.80191 7.93387 8.34530 8.44334 8.91765 9.03619 9.48884 11.02445 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.019030 B = 0.002855 C = 0.002712 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1471.016330 B = 9804.071240 C =10322.703058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.105 3.895 3 N -0.600 5.600 4 C 0.231 3.769 5 C -0.530 4.530 6 H 0.074 0.926 7 C 0.073 3.927 8 N -0.897 5.897 9 Si 0.876 3.124 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.266 1.266 13 C 0.702 3.298 14 O -0.568 6.568 15 N -0.689 5.689 16 C 0.130 3.870 17 C -0.066 4.066 18 C -0.125 4.125 19 C 0.311 3.689 20 N -0.556 5.556 21 C 0.079 3.921 22 C 0.515 3.485 23 C -0.170 4.170 24 O -0.530 6.530 25 N -0.477 5.477 26 C 0.084 3.916 27 H 0.051 0.949 28 H 0.062 0.938 29 H 0.063 0.937 30 H 0.090 0.910 31 H 0.062 0.938 32 H 0.033 0.967 33 H 0.038 0.962 34 H 0.265 0.735 35 H 0.405 0.595 36 H 0.157 0.843 37 H 0.136 0.864 38 H 0.063 0.937 39 H 0.076 0.924 40 H 0.084 0.916 41 H 0.097 0.903 42 H 0.095 0.905 43 H 0.087 0.913 44 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.351 -1.640 21.548 22.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.019 4.019 3 N -0.334 5.334 4 C 0.110 3.890 5 C -0.568 4.568 6 H 0.092 0.908 7 C -0.130 4.130 8 N -0.535 5.535 9 Si 0.703 3.297 10 H -0.199 1.199 11 H -0.211 1.211 12 H -0.191 1.191 13 C 0.403 3.597 14 O -0.444 6.444 15 N -0.339 5.339 16 C 0.030 3.970 17 C -0.095 4.095 18 C -0.148 4.148 19 C 0.084 3.916 20 N -0.287 5.287 21 C -0.063 4.063 22 C 0.304 3.696 23 C -0.229 4.229 24 O -0.404 6.404 25 N -0.189 5.189 26 C -0.077 4.077 27 H 0.070 0.930 28 H 0.081 0.919 29 H 0.082 0.918 30 H 0.109 0.891 31 H 0.081 0.919 32 H 0.050 0.950 33 H 0.056 0.944 34 H 0.075 0.925 35 H 0.243 0.757 36 H 0.174 0.826 37 H 0.154 0.846 38 H 0.082 0.918 39 H 0.095 0.905 40 H 0.103 0.897 41 H 0.115 0.885 42 H 0.114 0.886 43 H 0.105 0.895 44 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -6.172 -1.126 21.709 22.598 hybrid contribution -0.704 0.410 -1.362 1.587 sum -6.876 -0.716 20.347 21.489 Atomic orbital electron populations 1.22272 0.96536 1.01785 1.02513 1.21435 0.93507 0.83855 1.03118 1.47254 1.67166 1.13427 1.05545 1.19619 0.97358 0.93224 0.78762 1.21333 0.95356 1.33003 1.07153 0.90767 1.24849 0.95007 0.95794 0.97340 1.69899 1.15138 1.44906 1.23576 0.86856 0.81405 0.81651 0.79780 1.19881 1.21066 1.19050 1.15869 0.78896 0.84844 0.80047 1.90895 1.51492 1.16542 1.85473 1.42862 1.67744 1.20060 1.03213 1.18584 0.98376 0.93294 0.86707 1.21725 0.96626 0.94033 0.97117 1.21732 1.00412 1.01114 0.91535 1.17976 0.99518 0.88118 0.85971 1.45198 1.15202 1.49069 1.19259 1.21958 0.82269 1.03123 0.98999 1.20999 0.83254 0.77674 0.87666 1.21945 1.05118 1.02758 0.93066 1.90769 1.23652 1.57623 1.68402 1.67000 1.17622 1.10176 1.24078 1.22183 0.97794 1.00085 0.87682 0.92979 0.91918 0.91758 0.89131 0.91939 0.94954 0.94402 0.92537 0.75745 0.82586 0.84642 0.91829 0.90513 0.89707 0.88459 0.88628 0.89471 0.82221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.02 10.24 37.16 0.38 -1.64 16 2 C 0.11 1.52 5.87 -4.04 -0.02 1.50 16 3 N -0.60 -11.85 2.46 -180.81 -0.44 -12.30 16 4 C 0.23 5.49 4.23 -5.19 -0.02 5.47 16 5 C -0.53 -14.98 9.94 -34.44 -0.34 -15.32 16 6 H 0.07 2.32 8.06 -52.49 -0.42 1.89 16 7 C 0.07 2.09 5.47 -17.82 -0.10 2.00 16 8 N -0.90 -27.48 13.96 55.43 0.77 -26.71 16 9 Si 0.88 21.31 27.47 -169.99 -4.67 16.64 16 10 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 11 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 12 H -0.27 -6.04 6.54 56.52 0.37 -5.67 16 13 C 0.70 14.11 8.13 -86.92 -0.71 13.40 16 14 O -0.57 -13.72 13.45 5.29 0.07 -13.65 16 15 N -0.69 -10.54 5.20 -14.10 -0.07 -10.62 16 16 C 0.13 2.00 6.31 -83.46 -0.53 1.48 16 17 C -0.07 -1.10 8.79 -39.13 -0.34 -1.45 16 18 C -0.13 -1.94 8.78 -39.27 -0.34 -2.28 16 19 C 0.31 4.53 6.19 -154.57 -0.96 3.57 16 20 N -0.56 -6.41 3.04 -122.73 -0.37 -6.78 16 21 C 0.08 0.58 10.15 59.84 0.61 1.19 16 22 C 0.51 5.88 7.59 -10.99 -0.08 5.79 16 23 C -0.17 -1.01 9.57 36.00 0.34 -0.66 16 24 O -0.53 -8.32 15.87 5.55 0.09 -8.23 16 25 N -0.48 -6.85 9.99 -12.19 -0.12 -6.97 16 26 C 0.08 1.14 11.11 -17.35 -0.19 0.94 16 27 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 29 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.09 1.38 8.07 -51.93 -0.42 0.96 16 31 H 0.06 0.73 6.41 -51.93 -0.33 0.40 16 32 H 0.03 0.73 7.13 -51.93 -0.37 0.36 16 33 H 0.04 0.97 6.85 -51.93 -0.36 0.61 16 34 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 35 H 0.41 4.77 6.60 -40.82 -0.27 4.50 16 36 H 0.16 2.83 6.37 -52.49 -0.33 2.50 16 37 H 0.14 2.01 7.63 -52.49 -0.40 1.61 16 38 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 39 H 0.08 0.34 6.10 -51.93 -0.32 0.02 16 40 H 0.08 0.71 7.72 -51.93 -0.40 0.31 16 41 H 0.10 0.42 8.14 -51.93 -0.42 -0.01 16 42 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 43 H 0.09 0.32 6.23 -51.93 -0.32 0.00 16 44 H 0.16 1.66 8.06 -52.49 -0.42 1.23 16 LS Contribution 366.94 15.07 5.53 5.53 Total: -1.00 -37.46 366.94 -7.60 -45.06 By element: Atomic # 1 Polarization: 10.11 SS G_CDS: -6.07 Total: 4.04 kcal Atomic # 6 Polarization: 16.30 SS G_CDS: -2.31 Total: 13.99 kcal Atomic # 7 Polarization: -63.14 SS G_CDS: -0.24 Total: -63.38 kcal Atomic # 8 Polarization: -22.04 SS G_CDS: 0.16 Total: -21.88 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -4.67 Total: 16.64 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -37.46 -7.60 -45.06 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001413597500.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.293 kcal (2) G-P(sol) polarization free energy of solvation -37.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.056 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds