Wall clock time and date at job start Tue Mar 31 2020 12:39:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09002 * 109.46881 * 2 1 4 4 C 1.50697 * 109.47041 * 240.00060 * 2 1 3 5 5 H 1.08001 * 119.99932 * 265.74889 * 4 2 1 6 6 C 1.37874 * 120.00363 * 85.75353 * 4 2 1 7 7 N 1.31518 * 120.00579 * 185.08144 * 6 4 2 8 8 Si 1.86802 * 119.99679 * 5.07822 * 6 4 2 9 9 H 1.48500 * 109.47006 * 94.30300 * 8 6 4 10 10 H 1.48507 * 109.47213 * 214.29796 * 8 6 4 11 11 H 1.48498 * 109.47365 * 334.29995 * 8 6 4 12 12 N 1.46497 * 109.47344 * 119.99861 * 2 1 3 13 13 C 1.46502 * 119.99710 * 59.99742 * 12 2 1 14 14 S 1.65600 * 120.00229 * 240.00421 * 12 2 1 15 15 O 1.42103 * 106.40275 * 39.27434 * 14 12 2 16 16 O 1.42095 * 106.40104 * 172.19987 * 14 12 2 17 17 N 1.65596 * 107.21605 * 285.73649 * 14 12 2 18 18 C 1.46501 * 120.00127 * 80.95265 * 17 14 12 19 19 C 1.46503 * 120.00258 * 260.95531 * 17 14 12 20 20 C 1.53000 * 110.43261 * 292.22676 * 19 17 14 21 21 O 1.42896 * 109.47451 * 305.70081 * 20 19 17 22 22 C 1.54886 * 110.48740 * 169.54509 * 19 17 14 23 23 C 1.54887 * 102.74925 * 279.26267 * 22 19 17 24 24 C 1.54272 * 104.19464 * 322.05646 * 23 22 19 25 25 C 1.53873 * 106.59520 * 23.61314 * 24 23 22 26 26 H 1.08999 * 109.46513 * 183.96824 * 1 2 3 27 27 H 1.08997 * 109.47096 * 303.96730 * 1 2 3 28 28 H 1.08995 * 109.47171 * 63.96769 * 1 2 3 29 29 H 0.96994 * 120.00307 * 179.97438 * 7 6 4 30 30 H 1.09007 * 109.46919 * 87.63853 * 13 12 2 31 31 H 1.08991 * 109.47659 * 327.63809 * 13 12 2 32 32 H 1.09001 * 109.46971 * 207.63644 * 13 12 2 33 33 H 1.09002 * 109.46985 * 89.99826 * 18 17 14 34 34 H 1.09002 * 109.47251 * 210.00005 * 18 17 14 35 35 H 1.09002 * 109.47166 * 330.00314 * 18 17 14 36 36 H 1.09009 * 109.46956 * 65.70188 * 20 19 17 37 37 H 1.08997 * 109.47108 * 185.69827 * 20 19 17 38 38 H 0.96702 * 114.00176 * 179.97438 * 21 20 19 39 39 H 1.08990 * 110.75985 * 37.57960 * 22 19 17 40 40 H 1.09003 * 110.75279 * 160.95071 * 22 19 17 41 41 H 1.09007 * 110.48959 * 203.38366 * 23 22 19 42 42 H 1.08995 * 110.48911 * 80.73791 * 23 22 19 43 43 H 1.08999 * 110.03214 * 264.32256 * 24 23 22 44 44 H 1.09003 * 110.02622 * 142.89258 * 24 23 22 45 45 H 1.09004 * 110.02882 * 240.70699 * 25 24 23 46 46 H 1.09002 * 110.03103 * 119.28716 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.2777 -1.7612 -1.1850 6 6 2.1788 -0.0189 -2.4142 7 7 2.5209 -0.6584 -3.5114 8 14 1.8913 1.8263 -2.4598 9 1 3.1848 2.5334 -2.2809 10 1 1.2982 2.2027 -3.7682 11 1 0.9622 2.2096 -1.3666 12 7 2.0185 -0.6906 1.1961 13 6 1.6645 -2.0931 1.4280 14 16 2.9704 0.1143 2.2862 15 8 2.4406 1.4289 2.3880 16 8 3.1216 -0.7514 3.4028 17 7 4.4726 0.2669 1.6062 18 6 4.7317 1.3316 0.6338 19 6 5.5425 -0.6627 1.9770 20 6 5.9568 -0.4466 3.4339 21 8 6.2995 0.9263 3.6331 22 6 6.7592 -0.4929 1.0336 23 6 6.3385 -1.3052 -0.2163 24 6 5.5979 -2.5297 0.3599 25 6 5.0917 -2.1211 1.7544 26 1 -0.3632 -1.0252 0.0711 27 1 -0.3633 0.5742 0.8523 28 1 -0.3633 0.4510 -0.9234 29 1 2.6236 -0.1720 -4.3443 30 1 2.3929 -2.7378 0.9360 31 1 0.6725 -2.2895 1.0215 32 1 1.6649 -2.2957 2.4990 33 1 5.0774 2.2240 1.1556 34 1 5.4966 1.0028 -0.0698 35 1 3.8138 1.5602 0.0921 36 1 5.1285 -0.7133 4.0905 37 1 6.8186 -1.0732 3.6633 38 1 6.5722 1.1365 4.5368 39 1 6.9080 0.5566 0.7802 40 1 7.6583 -0.9141 1.4834 41 1 7.2167 -1.6209 -0.7795 42 1 5.6711 -0.7174 -0.8464 43 1 6.2817 -3.3744 0.4435 44 1 4.7560 -2.7922 -0.2807 45 1 5.5299 -2.7675 2.5148 46 1 4.0042 -2.1855 1.7906 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001424457237.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:39:15 Heat of formation + Delta-G solvation = -111.517016 kcal Electronic energy + Delta-G solvation = -29204.491292 eV Core-core repulsion = 25449.609299 eV Total energy + Delta-G solvation = -3754.881993 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.160 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -39.37871 -36.77803 -36.38842 -36.00241 -35.26167 -33.62780 -32.50165 -30.00018 -29.74907 -28.52506 -25.77101 -25.21542 -25.00999 -24.14980 -20.70417 -20.30694 -20.05571 -17.94847 -17.37366 -17.22444 -16.67695 -16.38483 -16.21200 -15.33318 -15.14717 -14.46985 -14.44143 -13.82226 -13.46496 -13.39532 -13.21108 -13.12135 -12.70266 -12.48729 -12.41438 -12.08303 -11.92456 -11.80559 -11.56334 -11.45923 -11.34016 -11.25116 -11.12760 -10.94825 -10.89898 -10.77333 -10.61454 -10.54179 -10.45200 -10.38924 -10.05764 -9.81298 -9.65471 -9.39107 -8.68837 -8.49906 -8.04035 -6.20996 -4.20173 1.21014 3.17092 3.28985 3.35189 3.40981 4.03876 4.20270 4.29338 4.74333 4.80103 4.93128 5.10290 5.15365 5.27602 5.42346 5.58254 5.62182 5.65605 5.67498 5.79758 5.91362 6.00905 6.01561 6.06502 6.10280 6.12846 6.18298 6.24133 6.31682 6.34300 6.43546 6.50618 6.50852 6.54780 6.64625 6.70288 6.78373 6.93103 7.09573 7.23636 7.43060 7.66637 7.72764 8.40610 8.85235 9.40977 10.91046 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.014278 B = 0.007402 C = 0.006550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1960.632349 B = 3782.046452 C = 4274.004552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.240 3.760 3 H 0.045 0.955 4 C -0.515 4.515 5 H 0.083 0.917 6 C 0.081 3.919 7 N -0.888 5.888 8 Si 0.846 3.154 9 H -0.271 1.271 10 H -0.283 1.283 11 H -0.255 1.255 12 N -0.989 5.989 13 C 0.099 3.901 14 S 2.783 3.217 15 O -0.988 6.988 16 O -0.996 6.996 17 N -0.980 5.980 18 C 0.094 3.906 19 C 0.190 3.810 20 C 0.053 3.947 21 O -0.564 6.564 22 C -0.116 4.116 23 C -0.126 4.126 24 C -0.117 4.117 25 C -0.134 4.134 26 H 0.053 0.947 27 H 0.028 0.972 28 H 0.055 0.945 29 H 0.265 0.735 30 H 0.051 0.949 31 H 0.073 0.927 32 H 0.063 0.937 33 H 0.051 0.949 34 H 0.080 0.920 35 H 0.066 0.934 36 H 0.074 0.926 37 H 0.052 0.948 38 H 0.372 0.628 39 H 0.080 0.920 40 H 0.071 0.929 41 H 0.061 0.939 42 H 0.082 0.918 43 H 0.057 0.943 44 H 0.076 0.924 45 H 0.074 0.926 46 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.393 -1.797 9.924 12.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.136 3.864 3 H 0.062 0.938 4 C -0.555 4.555 5 H 0.101 0.899 6 C -0.123 4.123 7 N -0.526 5.526 8 Si 0.672 3.328 9 H -0.196 1.196 10 H -0.209 1.209 11 H -0.179 1.179 12 N -0.831 5.831 13 C -0.048 4.048 14 S 2.794 3.206 15 O -0.971 6.971 16 O -0.981 6.981 17 N -0.818 5.818 18 C -0.051 4.051 19 C 0.101 3.899 20 C -0.026 4.026 21 O -0.368 6.368 22 C -0.155 4.155 23 C -0.164 4.164 24 C -0.154 4.154 25 C -0.173 4.173 26 H 0.072 0.928 27 H 0.047 0.953 28 H 0.074 0.926 29 H 0.075 0.925 30 H 0.069 0.931 31 H 0.091 0.909 32 H 0.081 0.919 33 H 0.070 0.930 34 H 0.098 0.902 35 H 0.084 0.916 36 H 0.092 0.908 37 H 0.070 0.930 38 H 0.218 0.782 39 H 0.099 0.901 40 H 0.090 0.910 41 H 0.079 0.921 42 H 0.101 0.899 43 H 0.076 0.924 44 H 0.095 0.905 45 H 0.093 0.907 46 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 7.000 -1.408 9.937 12.236 hybrid contribution 0.120 0.769 -0.110 0.786 sum 7.121 -0.639 9.827 12.152 Atomic orbital electron populations 1.22258 0.98306 1.00629 0.99657 1.19058 0.91678 0.92119 0.83506 0.93781 1.21150 1.44085 0.98505 0.91717 0.89884 1.24867 0.94384 0.97500 0.95522 1.69877 1.47200 1.35838 0.99650 0.87348 0.79828 0.87148 0.78475 1.19634 1.20877 1.17935 1.57771 1.64999 1.21343 1.38953 1.21308 1.01658 0.81815 0.99972 1.01851 0.72432 0.73157 0.73116 1.93562 1.78158 1.39145 1.86265 1.93463 1.86406 1.67720 1.50493 1.57565 1.26347 1.40001 1.57904 1.21562 1.02909 0.88957 0.91689 1.20860 0.88242 0.88609 0.92169 1.22986 0.99665 0.82874 0.97087 1.86531 1.89796 1.26522 1.33998 1.22759 0.95755 1.01490 0.95494 1.22443 0.99918 0.96874 0.97128 1.22031 1.00339 0.97521 0.95530 1.22678 1.02393 0.94112 0.98115 0.92847 0.95275 0.92601 0.92510 0.93086 0.90856 0.91864 0.93017 0.90188 0.91571 0.90812 0.93033 0.78176 0.90112 0.91005 0.92057 0.89919 0.92388 0.90503 0.90746 0.90580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.13 8.85 37.16 0.33 -2.80 16 2 C 0.24 5.44 2.02 -69.08 -0.14 5.30 16 3 H 0.04 1.06 3.44 -51.93 -0.18 0.88 16 4 C -0.52 -12.86 8.84 -34.44 -0.30 -13.17 16 5 H 0.08 2.23 7.52 -52.49 -0.39 1.83 16 6 C 0.08 2.12 5.47 -17.82 -0.10 2.02 16 7 N -0.89 -24.75 13.96 55.43 0.77 -23.98 16 8 Si 0.85 19.91 25.94 -169.99 -4.41 15.50 16 9 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 10 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 11 H -0.26 -5.89 6.00 56.52 0.34 -5.56 16 12 N -0.99 -20.04 3.00 -115.85 -0.35 -20.38 16 13 C 0.10 1.71 8.38 59.85 0.50 2.21 16 14 S 2.78 56.36 5.00 -107.50 -0.54 55.82 16 15 O -0.99 -22.96 16.70 -57.17 -0.95 -23.91 16 16 O -1.00 -19.59 12.36 -57.17 -0.71 -20.29 16 17 N -0.98 -17.76 2.92 -106.06 -0.31 -18.07 16 18 C 0.09 1.70 9.29 59.85 0.56 2.26 16 19 C 0.19 2.92 0.49 -130.16 -0.06 2.86 16 20 C 0.05 0.74 5.70 37.16 0.21 0.95 16 21 O -0.56 -7.73 13.32 -35.23 -0.47 -8.20 16 22 C -0.12 -1.59 5.20 -24.74 -0.13 -1.72 16 23 C -0.13 -1.85 6.47 -25.07 -0.16 -2.01 16 24 C -0.12 -1.70 6.80 -25.61 -0.17 -1.88 16 25 C -0.13 -1.99 5.55 -25.62 -0.14 -2.14 16 26 H 0.05 1.03 6.52 -51.93 -0.34 0.70 16 27 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.06 1.19 6.96 -51.93 -0.36 0.82 16 29 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 30 H 0.05 0.86 6.93 -51.93 -0.36 0.50 16 31 H 0.07 1.22 6.36 -51.93 -0.33 0.89 16 32 H 0.06 1.00 6.99 -51.93 -0.36 0.64 16 33 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 34 H 0.08 1.32 4.31 -51.93 -0.22 1.09 16 35 H 0.07 1.33 5.96 -51.93 -0.31 1.02 16 36 H 0.07 1.12 5.98 -51.92 -0.31 0.81 16 37 H 0.05 0.58 8.06 -51.93 -0.42 0.16 16 38 H 0.37 3.32 9.12 45.56 0.42 3.74 16 39 H 0.08 1.13 6.06 -51.93 -0.31 0.82 16 40 H 0.07 0.84 8.00 -51.93 -0.42 0.43 16 41 H 0.06 0.80 8.14 -51.92 -0.42 0.37 16 42 H 0.08 1.44 6.75 -51.93 -0.35 1.09 16 43 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 44 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 45 H 0.07 0.94 7.84 -51.93 -0.41 0.53 16 46 H 0.08 1.24 3.28 -51.93 -0.17 1.07 16 LS Contribution 345.56 15.07 5.21 5.21 Total: -1.00 -30.69 345.56 -7.51 -38.20 By element: Atomic # 1 Polarization: 14.37 SS G_CDS: -6.14 Total: 8.23 kcal Atomic # 6 Polarization: -8.50 SS G_CDS: 0.39 Total: -8.12 kcal Atomic # 7 Polarization: -62.55 SS G_CDS: 0.12 Total: -62.44 kcal Atomic # 8 Polarization: -50.28 SS G_CDS: -2.13 Total: -52.41 kcal Atomic # 14 Polarization: 19.91 SS G_CDS: -4.41 Total: 15.50 kcal Atomic # 16 Polarization: 56.36 SS G_CDS: -0.54 Total: 55.82 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -30.69 -7.51 -38.20 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001424457237.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.321 kcal (2) G-P(sol) polarization free energy of solvation -30.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.196 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds