Wall clock time and date at job start Tue Mar 31 2020 12:37:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 O 1.21288 * 119.99771 * 2 1 4 4 N 1.34773 * 120.00580 * 179.97438 * 2 1 3 5 5 C 1.46495 * 119.99694 * 351.04972 * 4 2 1 6 6 C 1.39572 * 120.00282 * 171.04074 * 4 2 1 7 7 C 1.39028 * 119.62251 * 346.82771 * 6 4 2 8 8 C 1.38295 * 119.17522 * 179.97438 * 7 6 4 9 9 C 1.39378 * 118.43753 * 0.02562 * 8 7 6 10 10 N 1.40150 * 120.41374 * 180.02562 * 9 8 7 11 11 C 1.34776 * 120.00088 * 322.09833 * 10 9 8 12 12 O 1.21585 * 120.00314 * 1.73899 * 11 10 9 13 13 N 1.34783 * 119.99830 * 181.74269 * 11 10 9 14 14 C 1.46502 * 119.99685 * 359.97438 * 13 11 10 15 15 C 1.46499 * 119.99994 * 179.97438 * 13 11 10 16 16 H 1.09003 * 109.46622 * 0.02562 * 15 13 11 17 17 C 1.52999 * 109.46835 * 119.99787 * 15 13 11 18 18 C 1.50697 * 109.47492 * 240.00070 * 15 13 11 19 19 H 1.08004 * 119.99721 * 0.02562 * 18 15 13 20 20 C 1.37868 * 120.00008 * 179.97438 * 18 15 13 21 21 N 1.31518 * 119.99798 * 179.97438 * 20 18 15 22 22 Si 1.86791 * 120.00379 * 0.02562 * 20 18 15 23 23 H 1.48502 * 109.47565 * 89.99794 * 22 20 18 24 24 H 1.48505 * 109.47547 * 209.99983 * 22 20 18 25 25 H 1.48505 * 109.47093 * 330.00181 * 22 20 18 26 26 C 1.38679 * 119.17297 * 359.97438 * 9 8 7 27 27 N 1.31920 * 120.75283 * 0.02562 * 26 9 8 28 28 H 1.09009 * 109.46877 * 185.48375 * 1 2 3 29 29 H 1.09004 * 109.47517 * 305.48161 * 1 2 3 30 30 H 1.09000 * 109.47150 * 65.48564 * 1 2 3 31 31 H 1.09003 * 109.47478 * 276.55291 * 5 4 2 32 32 H 1.09005 * 109.47634 * 36.55264 * 5 4 2 33 33 H 1.08998 * 109.47465 * 156.55749 * 5 4 2 34 34 H 1.07999 * 120.41121 * 359.97438 * 7 6 4 35 35 H 1.07998 * 120.78017 * 179.72503 * 8 7 6 36 36 H 0.97007 * 119.99839 * 142.09398 * 10 9 8 37 37 H 1.09001 * 109.46944 * 90.00415 * 14 13 11 38 38 H 1.09009 * 109.46513 * 209.99902 * 14 13 11 39 39 H 1.08995 * 109.47211 * 329.99522 * 14 13 11 40 40 H 1.09007 * 109.46995 * 179.97438 * 17 15 13 41 41 H 1.08997 * 109.47712 * 300.00373 * 17 15 13 42 42 H 1.09003 * 109.47031 * 60.00843 * 17 15 13 43 43 H 0.97000 * 119.99995 * 180.02562 * 21 20 18 44 44 H 1.08002 * 119.62787 * 180.02562 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1809 -1.1671 0.0005 5 6 1.4619 -2.4280 0.1985 6 6 3.5639 -1.1745 -0.1877 7 6 4.2014 -0.0266 -0.6446 8 6 5.5721 -0.0440 -0.8273 9 6 6.2644 -1.2202 -0.5447 10 7 7.6542 -1.2837 -0.7146 11 6 8.2352 -0.6549 -1.7555 12 8 7.5577 -0.0062 -2.5291 13 7 9.5675 -0.7451 -1.9388 14 6 10.3839 -1.5263 -1.0063 15 6 10.1991 -0.0620 -3.0705 16 1 9.4385 0.4639 -3.6478 17 6 11.2286 0.9427 -2.5496 18 6 10.8860 -1.0754 -3.9492 19 1 10.8549 -2.1236 -3.6907 20 6 11.5534 -0.6646 -5.0835 21 7 12.1533 -1.5490 -5.8500 22 14 11.6066 1.1482 -5.5309 23 1 12.7962 1.7782 -4.9038 24 1 11.6907 1.2916 -7.0067 25 1 10.3752 1.8161 -5.0380 26 6 5.5612 -2.3264 -0.0921 27 7 4.2532 -2.2739 0.0707 28 1 -0.3633 -1.0231 0.0982 29 1 -0.3634 0.5965 0.8368 30 1 -0.3633 0.4264 -0.9350 31 1 1.3201 -2.6019 1.2652 32 1 0.4905 -2.3734 -0.2930 33 1 2.0400 -3.2470 -0.2294 34 1 3.6332 0.8677 -0.8542 35 1 6.0931 0.8316 -1.1853 36 1 8.1978 -1.7803 -0.0831 37 1 10.4498 -2.5565 -1.3563 38 1 11.3842 -1.0965 -0.9514 39 1 9.9253 -1.5069 -0.0178 40 1 11.6989 1.4507 -3.3916 41 1 10.7318 1.6757 -1.9140 42 1 11.9892 0.4172 -1.9721 43 1 12.6231 -1.2599 -6.6479 44 1 6.0904 -3.2415 0.1295 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001425929649.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:37:25 Heat of formation + Delta-G solvation = 21.766928 kcal Electronic energy + Delta-G solvation = -26813.700240 eV Core-core repulsion = 22961.446672 eV Total energy + Delta-G solvation = -3852.253568 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.26080 -40.18533 -38.91522 -36.34398 -35.62383 -34.49675 -32.78318 -32.11054 -31.08400 -30.16899 -28.52951 -27.18773 -26.37206 -25.13903 -23.70422 -23.40783 -21.50244 -20.18067 -19.32738 -18.22226 -17.93007 -17.19511 -16.91089 -16.45378 -16.31664 -15.71354 -15.37379 -15.02972 -14.74098 -14.39293 -14.17805 -13.85265 -13.49975 -13.36115 -13.23678 -13.13096 -12.96965 -12.82026 -12.56609 -12.49194 -12.25778 -12.11039 -11.87691 -11.68792 -11.24433 -10.87244 -10.68970 -10.26275 -10.14498 -10.01634 -9.69589 -9.66051 -9.54703 -9.31289 -9.02134 -8.65197 -7.95530 -7.61902 -6.16206 -4.17058 1.05347 1.34987 2.22815 2.37437 3.00761 3.22433 3.36643 3.39337 3.57021 3.95031 4.12062 4.29438 4.33884 4.48123 4.64950 4.73043 4.96164 4.96814 5.09574 5.14951 5.15914 5.20300 5.35110 5.44507 5.50931 5.68222 5.83479 5.87216 6.09086 6.14203 6.21081 6.29341 6.32484 6.43157 6.61779 6.72538 6.80051 6.81958 6.99661 7.27906 7.47129 7.60153 7.65563 7.94264 8.30640 8.46147 8.84483 9.01536 9.44610 10.96548 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.023608 B = 0.002720 C = 0.002609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1185.751652 B =10292.671463 C =10731.060200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.514 3.486 3 O -0.519 6.519 4 N -0.545 5.545 5 C 0.076 3.924 6 C 0.320 3.680 7 C -0.170 4.170 8 C -0.055 4.055 9 C 0.110 3.890 10 N -0.689 5.689 11 C 0.700 3.300 12 O -0.581 6.581 13 N -0.597 5.597 14 C 0.086 3.914 15 C 0.244 3.756 16 H 0.065 0.935 17 C -0.162 4.162 18 C -0.528 4.528 19 H 0.078 0.922 20 C 0.076 3.924 21 N -0.895 5.895 22 Si 0.883 3.117 23 H -0.277 1.277 24 H -0.294 1.294 25 H -0.262 1.262 26 C 0.095 3.905 27 N -0.495 5.495 28 H 0.086 0.914 29 H 0.099 0.901 30 H 0.101 0.899 31 H 0.065 0.935 32 H 0.078 0.922 33 H 0.090 0.910 34 H 0.171 0.829 35 H 0.151 0.849 36 H 0.405 0.595 37 H 0.056 0.944 38 H 0.079 0.921 39 H 0.048 0.952 40 H 0.052 0.948 41 H 0.034 0.966 42 H 0.056 0.944 43 H 0.266 0.734 44 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.211 -1.630 15.971 25.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.304 3.696 3 O -0.394 6.394 4 N -0.272 5.272 5 C -0.066 4.066 6 C 0.091 3.909 7 C -0.192 4.192 8 C -0.084 4.084 9 C 0.010 3.990 10 N -0.339 5.339 11 C 0.402 3.598 12 O -0.458 6.458 13 N -0.331 5.331 14 C -0.058 4.058 15 C 0.142 3.858 16 H 0.083 0.917 17 C -0.220 4.220 18 C -0.566 4.566 19 H 0.097 0.903 20 C -0.127 4.127 21 N -0.532 5.532 22 Si 0.713 3.287 23 H -0.204 1.204 24 H -0.221 1.221 25 H -0.187 1.187 26 C -0.065 4.065 27 N -0.209 5.209 28 H 0.104 0.896 29 H 0.118 0.882 30 H 0.120 0.880 31 H 0.083 0.917 32 H 0.096 0.904 33 H 0.109 0.891 34 H 0.188 0.812 35 H 0.168 0.832 36 H 0.243 0.757 37 H 0.074 0.926 38 H 0.097 0.903 39 H 0.067 0.933 40 H 0.070 0.930 41 H 0.053 0.947 42 H 0.075 0.925 43 H 0.076 0.924 44 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -19.680 -1.347 15.492 25.082 hybrid contribution 1.082 1.018 -0.309 1.517 sum -18.598 -0.329 15.183 24.011 Atomic orbital electron populations 1.22002 0.90221 1.05203 1.05856 1.21026 0.91028 0.82309 0.75272 1.90601 1.69650 1.31446 1.47741 1.45325 1.04685 1.08692 1.68469 1.21964 0.96976 0.85376 1.02297 1.18275 0.84058 0.91267 0.97281 1.22633 0.94970 1.00545 1.01044 1.21723 0.93611 0.97620 0.95429 1.18526 0.83962 0.94445 1.02022 1.42790 1.04881 1.56867 1.29409 1.15912 0.82777 0.80402 0.80733 1.90884 1.62197 1.46111 1.46629 1.47168 1.03744 1.52337 1.29879 1.21566 0.96913 0.96714 0.90574 1.19249 0.92099 0.91399 0.83025 0.91749 1.22483 1.00284 0.98950 1.00330 1.21155 1.33280 0.94816 1.07385 0.90348 1.24855 0.94618 0.97574 0.95680 1.69872 1.34470 1.33848 1.15031 0.86922 0.79093 0.85852 0.76869 1.20381 1.22116 1.18723 1.22155 0.88072 0.96520 0.99790 1.66903 1.08209 1.26930 1.18838 0.89564 0.88209 0.88050 0.91683 0.90353 0.89109 0.81194 0.83151 0.75738 0.92581 0.90252 0.93344 0.93002 0.94715 0.92511 0.92408 0.82226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.89 10.05 36.00 0.36 -0.53 16 2 C 0.51 5.37 7.61 -10.99 -0.08 5.28 16 3 O -0.52 -7.40 13.80 5.55 0.08 -7.32 16 4 N -0.55 -5.91 3.09 -122.73 -0.38 -6.29 16 5 C 0.08 0.51 9.78 59.84 0.59 1.10 16 6 C 0.32 4.50 7.25 -154.58 -1.12 3.38 16 7 C -0.17 -2.63 8.87 -39.27 -0.35 -2.98 16 8 C -0.06 -0.92 8.78 -39.14 -0.34 -1.26 16 9 C 0.11 1.67 6.25 -83.47 -0.52 1.15 16 10 N -0.69 -10.50 5.23 -14.09 -0.07 -10.57 16 11 C 0.70 14.03 8.11 -86.91 -0.70 13.33 16 12 O -0.58 -13.81 13.43 5.29 0.07 -13.74 16 13 N -0.60 -12.02 2.75 -181.00 -0.50 -12.52 16 14 C 0.09 1.32 9.46 59.85 0.57 1.89 16 15 C 0.24 5.83 2.23 -69.08 -0.15 5.68 16 16 H 0.06 1.72 5.95 -51.93 -0.31 1.41 16 17 C -0.16 -3.44 8.65 37.16 0.32 -3.11 16 18 C -0.53 -14.48 8.95 -34.44 -0.31 -14.79 16 19 H 0.08 2.31 7.89 -52.48 -0.41 1.90 16 20 C 0.08 2.15 5.45 -17.82 -0.10 2.05 16 21 N -0.89 -26.86 13.96 55.43 0.77 -26.08 16 22 Si 0.88 21.78 24.37 -169.99 -4.14 17.63 16 23 H -0.28 -6.51 6.87 56.52 0.39 -6.12 16 24 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 25 H -0.26 -6.41 6.53 56.52 0.37 -6.04 16 26 C 0.09 1.25 11.11 -17.35 -0.19 1.06 16 27 N -0.49 -6.74 9.19 -12.19 -0.11 -6.85 16 28 H 0.09 0.24 5.44 -51.92 -0.28 -0.05 16 29 H 0.10 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.08 0.29 6.03 -51.93 -0.31 -0.03 16 33 H 0.09 0.71 7.41 -51.93 -0.38 0.32 16 34 H 0.17 2.72 5.09 -53.19 -0.27 2.45 16 35 H 0.15 2.71 6.62 -52.49 -0.35 2.36 16 36 H 0.41 4.74 6.54 -40.82 -0.27 4.48 16 37 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 38 H 0.08 1.21 6.43 -51.92 -0.33 0.88 16 39 H 0.05 0.54 6.34 -51.93 -0.33 0.21 16 40 H 0.05 1.15 3.27 -51.92 -0.17 0.98 16 41 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 42 H 0.06 1.10 6.66 -51.93 -0.35 0.76 16 43 H 0.27 7.50 8.31 -40.82 -0.34 7.17 16 44 H 0.16 1.62 8.06 -52.49 -0.42 1.20 16 LS Contribution 349.59 15.07 5.27 5.27 Total: -1.00 -36.06 349.59 -6.54 -42.60 By element: Atomic # 1 Polarization: 11.12 SS G_CDS: -5.48 Total: 5.63 kcal Atomic # 6 Polarization: 14.28 SS G_CDS: -2.04 Total: 12.24 kcal Atomic # 7 Polarization: -62.02 SS G_CDS: -0.29 Total: -62.31 kcal Atomic # 8 Polarization: -21.21 SS G_CDS: 0.15 Total: -21.06 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -4.14 Total: 17.63 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -36.06 -6.54 -42.60 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001425929649.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.366 kcal (2) G-P(sol) polarization free energy of solvation -36.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.599 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds