Wall clock time and date at job start Tue Mar 31 2020 12:37:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.21285 * 120.00218 * 2 1 4 4 N 1.34780 * 119.99703 * 180.02562 * 2 1 3 5 5 C 1.46500 * 119.99913 * 356.75990 * 4 2 1 6 6 C 1.39574 * 119.99733 * 176.76705 * 4 2 1 7 7 C 1.39020 * 119.62315 * 16.93138 * 6 4 2 8 8 C 1.38303 * 119.17492 * 179.97438 * 7 6 4 9 9 C 1.39373 * 118.43599 * 0.02562 * 8 7 6 10 10 N 1.40156 * 120.41493 * 180.02562 * 9 8 7 11 11 C 1.34777 * 119.99618 * 326.20413 * 10 9 8 12 12 O 1.21591 * 120.00163 * 354.24937 * 11 10 9 13 13 N 1.34777 * 119.99510 * 174.25361 * 11 10 9 14 14 C 1.46497 * 120.00087 * 359.97438 * 13 11 10 15 15 C 1.46501 * 119.99864 * 179.97438 * 13 11 10 16 16 H 1.09007 * 109.46918 * 359.97438 * 15 13 11 17 17 C 1.52999 * 109.47102 * 240.00168 * 15 13 11 18 18 C 1.50698 * 109.47216 * 119.99674 * 15 13 11 19 19 H 1.08003 * 119.99934 * 0.02562 * 18 15 13 20 20 C 1.37873 * 120.00292 * 179.97438 * 18 15 13 21 21 N 1.31516 * 119.99806 * 0.02562 * 20 18 15 22 22 Si 1.86796 * 120.00470 * 179.97438 * 20 18 15 23 23 H 1.48508 * 109.46725 * 60.00301 * 22 20 18 24 24 H 1.48501 * 109.47645 * 180.02562 * 22 20 18 25 25 H 1.48504 * 109.47380 * 300.00612 * 22 20 18 26 26 C 1.38685 * 119.17449 * 0.27121 * 9 8 7 27 27 N 1.31922 * 120.74712 * 359.43482 * 26 9 8 28 28 H 1.08995 * 109.47546 * 271.22022 * 1 2 3 29 29 H 1.09006 * 109.46694 * 31.21885 * 1 2 3 30 30 H 1.08993 * 109.47155 * 151.21399 * 1 2 3 31 31 H 1.08996 * 109.47665 * 275.42608 * 5 4 2 32 32 H 1.09004 * 109.46943 * 35.43155 * 5 4 2 33 33 H 1.09004 * 109.46682 * 155.42406 * 5 4 2 34 34 H 1.08007 * 120.41603 * 359.95587 * 7 6 4 35 35 H 1.08004 * 120.78217 * 180.02562 * 8 7 6 36 36 H 0.96998 * 119.99658 * 145.92860 * 10 9 8 37 37 H 1.08995 * 109.47174 * 90.00447 * 14 13 11 38 38 H 1.09012 * 109.46835 * 210.00140 * 14 13 11 39 39 H 1.08996 * 109.47172 * 329.99547 * 14 13 11 40 40 H 1.09000 * 109.46718 * 180.02562 * 17 15 13 41 41 H 1.08997 * 109.46724 * 299.99602 * 17 15 13 42 42 H 1.08997 * 109.47412 * 59.99860 * 17 15 13 43 43 H 0.97003 * 120.00501 * 179.97438 * 21 20 18 44 44 H 1.07997 * 119.62838 * 179.70158 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0503 0.0000 4 7 2.1808 -1.1673 -0.0005 5 6 1.4500 -2.4350 0.0706 6 6 3.5749 -1.1682 -0.0687 7 6 4.2777 -0.0032 0.2171 8 6 5.6589 -0.0147 0.1472 9 6 6.2954 -1.2020 -0.2100 10 7 7.6933 -1.2605 -0.2930 11 6 8.3896 -0.1821 -0.7038 12 8 7.8023 0.8054 -1.1016 13 7 9.7369 -0.1985 -0.6737 14 6 10.4445 -1.3882 -0.1939 15 6 10.4939 0.9735 -1.1207 16 1 9.8018 1.7530 -1.4395 17 6 11.3952 0.5816 -2.2932 18 6 11.3413 1.4871 0.0147 19 1 11.3187 0.9900 0.9732 20 6 12.1464 2.5910 -0.1705 21 7 12.1743 3.1960 -1.3379 22 14 13.1963 3.2281 1.2369 23 1 14.1386 2.1658 1.6717 24 1 13.9637 4.4160 0.7838 25 1 12.3210 3.6092 2.3744 26 6 5.5282 -2.3236 -0.4872 27 7 4.2124 -2.2777 -0.4050 28 1 -0.3634 0.0219 1.0274 29 1 -0.3633 0.8789 -0.5327 30 1 -0.3633 -0.9006 -0.4948 31 1 1.2347 -2.6724 1.1124 32 1 0.5150 -2.3468 -0.4827 33 1 2.0566 -3.2289 -0.3651 34 1 3.7516 0.8997 0.4899 35 1 6.2307 0.8754 0.3642 36 1 8.1598 -2.0758 -0.0510 37 1 10.6369 -2.0588 -1.0313 38 1 11.3908 -1.0905 0.2580 39 1 9.8325 -1.9002 0.5486 40 1 11.9587 1.4535 -2.6255 41 1 12.0872 -0.1980 -1.9748 42 1 10.7822 0.2101 -3.1144 43 1 12.7404 3.9729 -1.4682 44 1 6.0136 -3.2461 -0.7694 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001425929650.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:37:28 Heat of formation + Delta-G solvation = 12.502248 kcal Electronic energy + Delta-G solvation = -26771.975912 eV Core-core repulsion = 22919.320597 eV Total energy + Delta-G solvation = -3852.655315 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.19253 -40.07615 -38.80432 -36.22121 -35.45138 -34.39187 -32.84396 -32.04182 -30.88378 -29.47555 -28.34530 -27.11804 -26.16989 -25.22899 -23.59164 -23.35676 -21.34333 -20.14272 -19.25192 -18.15897 -17.85774 -16.95997 -16.82616 -16.39108 -16.25007 -15.54189 -15.17170 -14.87892 -14.49547 -14.28317 -13.99866 -13.83582 -13.56372 -13.23944 -13.18216 -13.02688 -12.71829 -12.61971 -12.54686 -12.50714 -12.17692 -11.69010 -11.55963 -11.07088 -10.98603 -10.84698 -10.68065 -10.30128 -10.17917 -10.07779 -9.85667 -9.53916 -9.35680 -9.22326 -9.07674 -8.44025 -7.81589 -7.49058 -6.08206 -4.16494 1.13491 1.41157 2.29760 2.43344 3.13729 3.27377 3.33045 3.35387 3.66604 4.03344 4.17961 4.33973 4.48188 4.53923 4.64853 4.81690 4.95609 5.02268 5.13023 5.23004 5.23289 5.26539 5.39568 5.53140 5.57254 5.75159 5.91788 5.92659 6.17703 6.27571 6.42179 6.64513 6.74560 6.78506 6.83075 6.97926 7.09021 7.13754 7.43952 7.66205 7.74209 7.79120 7.99541 8.04652 8.19274 8.58764 8.83799 9.16071 9.50268 10.97109 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.022311 B = 0.002694 C = 0.002534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1254.693277 B =10389.455776 C =11046.221170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.511 3.489 3 O -0.517 6.517 4 N -0.544 5.544 5 C 0.072 3.928 6 C 0.314 3.686 7 C -0.169 4.169 8 C -0.060 4.060 9 C 0.115 3.885 10 N -0.690 5.690 11 C 0.695 3.305 12 O -0.578 6.578 13 N -0.602 5.602 14 C 0.082 3.918 15 C 0.272 3.728 16 H 0.065 0.935 17 C -0.147 4.147 18 C -0.528 4.528 19 H 0.059 0.941 20 C 0.065 3.935 21 N -0.887 5.887 22 Si 0.900 3.100 23 H -0.277 1.277 24 H -0.286 1.286 25 H -0.277 1.277 26 C 0.087 3.913 27 N -0.495 5.495 28 H 0.099 0.901 29 H 0.098 0.902 30 H 0.086 0.914 31 H 0.063 0.937 32 H 0.077 0.923 33 H 0.095 0.905 34 H 0.178 0.822 35 H 0.152 0.848 36 H 0.404 0.596 37 H 0.044 0.956 38 H 0.086 0.914 39 H 0.047 0.953 40 H 0.094 0.906 41 H 0.029 0.971 42 H 0.011 0.989 43 H 0.264 0.736 44 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.094 -14.601 3.655 24.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.301 3.699 3 O -0.393 6.393 4 N -0.271 5.271 5 C -0.070 4.070 6 C 0.085 3.915 7 C -0.191 4.191 8 C -0.089 4.089 9 C 0.016 3.984 10 N -0.340 5.340 11 C 0.397 3.603 12 O -0.455 6.455 13 N -0.336 5.336 14 C -0.062 4.062 15 C 0.172 3.828 16 H 0.083 0.917 17 C -0.205 4.205 18 C -0.566 4.566 19 H 0.077 0.923 20 C -0.137 4.137 21 N -0.525 5.525 22 Si 0.727 3.273 23 H -0.203 1.203 24 H -0.212 1.212 25 H -0.202 1.202 26 C -0.073 4.073 27 N -0.208 5.208 28 H 0.117 0.883 29 H 0.117 0.883 30 H 0.105 0.895 31 H 0.081 0.919 32 H 0.095 0.905 33 H 0.114 0.886 34 H 0.195 0.805 35 H 0.170 0.830 36 H 0.241 0.759 37 H 0.062 0.938 38 H 0.104 0.896 39 H 0.066 0.934 40 H 0.113 0.887 41 H 0.048 0.952 42 H 0.030 0.970 43 H 0.074 0.926 44 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -19.531 -13.841 3.074 24.134 hybrid contribution 1.485 0.372 0.984 1.820 sum -18.046 -13.469 4.057 22.881 Atomic orbital electron populations 1.21971 0.90212 1.05460 1.05284 1.21034 0.91024 0.82360 0.75443 1.90569 1.69205 1.31468 1.48046 1.45275 1.03745 1.08304 1.69736 1.21992 0.97104 0.85521 1.02411 1.18270 0.83696 0.90858 0.98691 1.22910 0.94005 1.00392 1.01779 1.21777 0.93978 0.98465 0.94636 1.18580 0.83651 0.95988 1.00187 1.42892 1.03896 1.16522 1.70722 1.16016 0.82575 0.82667 0.79035 1.90902 1.68527 1.32841 1.53222 1.47622 1.02619 1.17881 1.65509 1.21570 0.99057 0.87683 0.97873 1.18915 0.89963 0.81219 0.92705 0.91692 1.22105 0.99459 1.01959 0.97023 1.21273 1.24928 1.13104 0.97335 0.92292 1.24883 0.96760 0.96183 0.95897 1.69868 1.39424 1.20802 1.22393 0.86540 0.80158 0.78321 0.82258 1.20255 1.21151 1.20237 1.22058 0.87494 0.98024 0.99741 1.66816 1.10086 1.27639 1.16300 0.88266 0.88310 0.89502 0.91868 0.90475 0.88642 0.80536 0.83015 0.75914 0.93765 0.89553 0.93398 0.88721 0.95160 0.96980 0.92564 0.82413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.95 9.73 36.01 0.35 -0.59 16 2 C 0.51 5.66 7.69 -10.98 -0.08 5.57 16 3 O -0.52 -7.89 13.65 5.55 0.08 -7.81 16 4 N -0.54 -6.09 3.09 -122.73 -0.38 -6.47 16 5 C 0.07 0.49 10.12 59.85 0.61 1.09 16 6 C 0.31 4.56 7.23 -154.58 -1.12 3.44 16 7 C -0.17 -2.76 8.94 -39.27 -0.35 -3.11 16 8 C -0.06 -1.06 8.76 -39.14 -0.34 -1.40 16 9 C 0.12 1.84 6.29 -83.46 -0.52 1.31 16 10 N -0.69 -11.04 5.19 -14.09 -0.07 -11.11 16 11 C 0.70 14.67 8.03 -86.92 -0.70 13.97 16 12 O -0.58 -14.57 13.45 5.29 0.07 -14.50 16 13 N -0.60 -12.72 2.75 -181.00 -0.50 -13.22 16 14 C 0.08 1.32 9.15 59.85 0.55 1.86 16 15 C 0.27 6.93 2.64 -69.08 -0.18 6.75 16 16 H 0.07 1.93 6.90 -51.92 -0.36 1.58 16 17 C -0.15 -3.50 8.97 37.16 0.33 -3.17 16 18 C -0.53 -14.13 7.99 -34.44 -0.28 -14.41 16 19 H 0.06 1.54 7.33 -52.48 -0.38 1.16 16 20 C 0.07 1.78 5.30 -17.82 -0.09 1.68 16 21 N -0.89 -25.07 11.32 55.43 0.63 -24.45 16 22 Si 0.90 20.98 29.54 -169.99 -5.02 15.96 16 23 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 24 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 25 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 26 C 0.09 1.17 11.11 -17.35 -0.19 0.98 16 27 N -0.49 -6.86 9.05 -12.19 -0.11 -6.97 16 28 H 0.10 0.39 8.14 -51.93 -0.42 -0.04 16 29 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.09 0.28 5.92 -51.93 -0.31 -0.03 16 31 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 32 H 0.08 0.30 5.95 -51.93 -0.31 -0.01 16 33 H 0.09 0.74 7.10 -51.93 -0.37 0.37 16 34 H 0.18 3.01 4.94 -54.11 -0.27 2.74 16 35 H 0.15 3.02 6.57 -52.48 -0.34 2.67 16 36 H 0.40 4.98 6.64 -40.82 -0.27 4.70 16 37 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.09 1.48 7.02 -51.92 -0.36 1.12 16 39 H 0.05 0.60 6.45 -51.93 -0.33 0.27 16 40 H 0.09 2.48 6.07 -51.93 -0.32 2.17 16 41 H 0.03 0.66 7.67 -51.93 -0.40 0.26 16 42 H 0.01 0.26 8.14 -51.93 -0.42 -0.17 16 43 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 44 H 0.16 1.59 8.06 -52.49 -0.42 1.17 16 LS Contribution 356.93 15.07 5.38 5.38 Total: -1.00 -34.78 356.93 -7.65 -42.43 By element: Atomic # 1 Polarization: 12.46 SS G_CDS: -5.69 Total: 6.77 kcal Atomic # 6 Polarization: 16.01 SS G_CDS: -2.03 Total: 13.98 kcal Atomic # 7 Polarization: -61.78 SS G_CDS: -0.43 Total: -62.21 kcal Atomic # 8 Polarization: -22.46 SS G_CDS: 0.15 Total: -22.31 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -34.78 -7.65 -42.43 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001425929650.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.936 kcal (2) G-P(sol) polarization free energy of solvation -34.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.434 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds